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Chauhan C, Tanuj, Kumar R, Kumar J, Sharma S, Benmansour S, Kumar S. Synthesis, structural characterization, DFT and molecular dynamics simulations of dinuclear (μ-hydroxo)-bridged triethanolamine copper(II) complexes: efficient candidates towards visible light-mediated photo-Fenton degradation of organic dyes. Dalton Trans 2024. [PMID: 39087793 DOI: 10.1039/d4dt01463d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
Multinuclear (di/tri) copper(II) complexes bridged through hydroxyl groups are very interesting coordination complexes owing to their potential applications in various fields. In this work, three novel dinuclear (μ-hydroxo)-bridged copper(II) complexes in the crystal form, namely, [Cu2(3,5-DIFLB)2(H2tea)2](H2O) (1), [Cu2(4-ClB)2(H2tea)2](H2O) (2), and [Cu2(4-ETHB)2(H2tea)2](H2O)2 (3) (where DIFLB = difluorobenzoate, CLB = chlorobenzoate, ETHB = ethoxybenzoate, and H3tea = triethanolamine), were isolated at room temperature using methanol and water in a 4 : 1 v/v ratio as a solvent. Furthermore, all three complexes (1-3) were characterised using spectroscopic (UV-vis, DRS, and FT-IR), electrochemical (CV) and single-crystal X-ray diffraction techniques. Structural insights gained by packing analysis revealed the role of steric constraints of substituents and various non-covalent interactions in lattice stabilization, which were indeed supported by theoretical and molecular electrostatic potential illustrations. Hirshfeld surface analysis provided quantitative verification about various non-covalent interactions (interatomic contacts) involved in the packing of molecules. Interestingly, as a potential application, complexes 1-3 all exhibited remarkable visible light-mediated photo-Fenton degradation of approximately 98% for 50 ppm concentration of organic dyes (fuchsin basic (FB) and methyl orange (MO)) in 90 minutes with the optimized conditions of 1 mg mL-1 of dye solution. In all the cases, dye degradation by these materials was ascribed to the symbiotic relations among the molecular structures of complexes 1-3, which were endowed with various electron-withdrawing and electron-releasing substituents and ionic strength, with respect to the structure, shape and interacting patterns of dye molecules. The adsorption mechanism indicates that various weak interactions between the donor and acceptor groups of complexes and dyes, such as electrostatic, hydrogen bonding, and direct coordination to metal sites, play a crucial role, which is confirmed by molecular dynamics (MD) simulations. Theoretical studies by DFT-based descriptors, molecular electrostatic potentials, and band gaps provided deep insights into various electronic and reactivity parameters. For subsequent processes of dye degradation, complexes 1-3 were stable and recoverable. The successful integration of experimental and theoretical approaches sheds light on copper-based dinuclear stable coordination complexes, showcasing a significant step towards the development of novel heterogeneous photo-Fenton catalysts.
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Affiliation(s)
- Chetan Chauhan
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India.
| | - Tanuj
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India.
| | - Rajesh Kumar
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India.
| | - Jitendra Kumar
- Department of Chemistry, MLPK, College, Balrampur, UP, India
| | - Subhash Sharma
- CONAHCyT-Centro de Nanociencias y Nanotecnología. Universidad Nacional Autónoma de México, Km 107 Carretera Tijuana-Ensenada AP14, Ensenada, 22860, B.C, Mexico
| | - Samia Benmansour
- Departamento de Química Inorgánica, Edificio F Grupo M4 (Materiales moleculares Multifuncionales y Modulables) C/Doctor Moliner, 50 46100-Burjassot, Spain.
| | - Santosh Kumar
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India.
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Mahesha P, Shetty NS, Kulkarni SD, Sinha RK. A selective bis-thiophene chalcone-based spectrofluorimetric sensor for Fe 3. LUMINESCENCE 2024; 39:e4823. [PMID: 38965884 DOI: 10.1002/bio.4823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 05/28/2024] [Accepted: 06/02/2024] [Indexed: 07/06/2024]
Abstract
A highly selective bis thiophene-based chalcone as a chemosensor for detecting Fe3+ metal ions in DMF: H2O (9:1). This sensor was selective toward ferric ions over other metal ions with a detection limit in micromolar range.
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Affiliation(s)
- Priyanka Mahesha
- Department of Chemistry, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - Nitinkumar S Shetty
- Department of Chemistry, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - Suresh D Kulkarni
- Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, Manipal, Karnataka, India
| | - Rajeev K Sinha
- Department of Physics, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, India
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Islam A, Choudhury P, Sarkar K, Das RK, Bhattacharya M, Ghosh P. Molecular iodine catalyzed C(sp2)-H sulfenylation of biologically active enaminone compounds under mechanochemical conditions and studies on their biocidal activity including molecular docking and DFT. Mol Divers 2024; 28:1597-1607. [PMID: 37418167 DOI: 10.1007/s11030-023-10677-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 06/15/2023] [Indexed: 07/08/2023]
Abstract
Here we demonstrated a solvent free, mechanochemical I2 catalyzed C(sp2)-H sulfenylation of enaminones under grinding condition. Only catalytic amount of I2 is required on silica surface without any external heating. The reaction time has reduced to a great extent in comparison to their solution based counterpart. The frictional energy created by ball-mill on mesoporous silica materials has attracted much attention towards this mechanochemical approach for molecular heterogeneous catalysis. Their large surface area and well defined porous architecture certainly increase the catalytic ability of iodine in this developed protocol. Anti-microbial activities of our synthesized compounds were investigated against two gram positive (Staphylococcus aureus and Bacillus cereus) and two gram negative (Escherichia coli and Klebsiella pneumonia) bacteria. To understand the potency of these compounds (3a-3m) as antimalarial agents, molecular docking studies were also performed. Density functional theory was also used to investigate the chemical reactivity and kinetic stability of the compound 3a-3m.
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Affiliation(s)
- Aminul Islam
- Department of Chemistry, North Bengal University, Darjeeling, 734 013, India
| | - Prasun Choudhury
- Department of Chemistry, North Bengal University, Darjeeling, 734 013, India
| | - Kaushik Sarkar
- Department of Chemistry, North Bengal University, Darjeeling, 734 013, India
| | - Rajesh Kumar Das
- Department of Chemistry, North Bengal University, Darjeeling, 734 013, India
| | - Malay Bhattacharya
- Department of Tea Science, North Bengal University, Darjeeling, 734 013, India
| | - Pranab Ghosh
- Department of Chemistry, North Bengal University, Darjeeling, 734 013, India.
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Palafox MA, Belskaya NP, Kostova IP. Study of the Molecular Architectures of 2-(4-Chlorophenyl)-5-(pyrrolidin-1-yl)-2 H-1,2,3-triazole-4-carboxylic Acid Using Their Vibrational Spectra, Quantum Chemical Calculations and Molecular Docking with MMP-2 Receptor. Pharmaceutics 2023; 15:2686. [PMID: 38140027 PMCID: PMC10747663 DOI: 10.3390/pharmaceutics15122686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/15/2023] [Accepted: 11/22/2023] [Indexed: 12/24/2023] Open
Abstract
1,2,3-triazole skeleton is a valuable building block for the discovery of new promising anticancer agents. In the present work, the molecular structure of the synthesized anticancer drug 2-(4-chlorophenyl)-5-(pyrrolidin-1-yl)-2H-1,2,3-triazole-4-carboxylic acid (1b) and its anionic form (2b) was characterized by means of the B3LYP, M06-2X and MP2 quantum chemical methods, optimizing their monomer, cyclic dimer and stacking forms using the Gaussian16 program package. The molecular structure was found to be slightly out of plane. The good agreement between the IR and Raman bands experimentally observed in the solid state with those calculated theoretically confirms the synthesized structures. All of the bands were accurately assigned according to functional calculations (DFT) in the monomer and dimer forms, together with the polynomic scaling equation procedure (PSE). Therefore, the effect of the substituents on the triazole ring and the effect of the chlorine atom on the molecular structure and on the vibrational spectra were evaluated through comparison with its non-substituted form. Through molecular docking calculations, it was evaluated as to how molecule 1b interacts with few amino acids of the MMP-2 metalloproteinase receptor, using Sybyl-X 2.0 software. Thus, the relevance of triazole scaffolds in established hydrogen bond-type interactions was demonstrated.
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Affiliation(s)
- Mauricio Alcolea Palafox
- Departamento de Química Física, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Nataliya P. Belskaya
- Department of Technology for Organic Synthesis, Ural Federal University, 19 Mira Str., 620012 Yekaterinburg, Russia;
| | - Irena P. Kostova
- Department of Chemistry, Faculty of Pharmacy, Medical University of Sofia, 2 Dunav Str., 1000 Sofia, Bulgaria
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Alcolea Palafox M, Belskaya NP, Kostova IP. Peculiarities of the Spatial and Electronic Structure of 2-Aryl-1,2,3-Triazol-5-Carboxylic Acids and Their Salts on the Basis of Spectral Studies and DFT Calculations. Int J Mol Sci 2023; 24:14001. [PMID: 37762306 PMCID: PMC10531006 DOI: 10.3390/ijms241814001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 09/04/2023] [Accepted: 09/08/2023] [Indexed: 09/29/2023] Open
Abstract
The molecular structure and vibrational spectra of six 1,2,3-triazoles-containing molecules with possible anticancer activity were investigated. For two of them, the optimized geometry was determined in the monomer, cyclic dimer and stacking forms using the B3LYP, M06-2X and MP2 methods implemented in the GAUSSIAN-16 program package. The effect of the para-substitution on the aryl ring was evaluated based on changes in the molecular structure and atomic charge distribution of the triazole ring. An increment in the positive N4 charge was linearly related to a decrease in both the aryl ring and the carboxylic group rotation, with respect to the triazole ring, and by contrast, to an increment in the pyrrolidine ring rotation. Anionic formation had a larger effect on the triazole ring structure than the electronic nature of the different substituents on the aryl ring. Several relationships were obtained that could facilitate the selection of substituents on the triazole ring for their further synthesis. The observed IR and Raman bands in the solid state of two of these compounds were accurately assigned according to monomer and dimer form calculations, together with the polynomic scaling equation procedure (PSE). The large red-shift of the C=O stretching mode indicates that strong H-bonds in the dimer form appear in the solid state through this group.
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Affiliation(s)
- Mauricio Alcolea Palafox
- Departamento de Química Física, Facultad de Ciencias Químicas, Universidad Complutense, 28040 Madrid, Spain
| | - Nataliya P. Belskaya
- Department of Technology for Organic Synthesis, Ural Federal University, 19 Mira Str., 620012 Yekaterinburg, Russia;
| | - Irena P. Kostova
- Department of Chemistry, Faculty of Pharmacy, Medical University, 2 Dunav Str., 1000 Sofia, Bulgaria;
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Salwadi NFL, Ooi CC, Yeap GY, Suah FBM, Cherin S, Ito MM, Kikuchi K, Fukaya R, Kaneko K, Shimizu A. Synthesis and Molecular Structure of V-Shaped Liquid Crystalline Compounds: Spectroscopic, Mesomorphic, DFT Investigations, Electrochemical and Fluorescence Studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
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Comprehensive Study of the Ammonium Sulfamate-Urea Binary System. Molecules 2023; 28:molecules28020470. [PMID: 36677528 PMCID: PMC9861415 DOI: 10.3390/molecules28020470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 12/29/2022] [Accepted: 12/30/2022] [Indexed: 01/05/2023] Open
Abstract
The physicochemical properties of binary systems are of great importance for the application of the latter. We report on the investigation of an ammonium sulfamate-urea binary system with different component ratios using a combination of experimental (FTIR, XRD, TGA/DSC, and melting point) and theoretical (DFT, QTAIM, ELF, RDG, ADMP, etc.) techniques. It is shown that, at a temperature of 100 °C, the system under study remains thermally and chemically stable for up to 30 min. It was established using X-ray diffraction analysis that the heating time barely affects the X-ray characteristics of the system. Data on the aggregate states in specified temperature ranges were obtained with thermal analysis and determination of the melting point. The structures of the ammonium sulfamate-urea system with different component ratios were optimized within the density functional theory. The atom-centered density matrix propagation calculation of the ammonium sulfamate-urea system with different component ratios was performed at temperatures of 100, 300, and 500 K. Regardless of the component ratio, a regular increase in the potential energy variation (curve amplitude) with an increase in temperature from 100 to 500 K was found.
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Experimental and theoretical examinations of triazole linked saccharin derivatives as organic corrosion inhibitors for mild steel in hydrochloric acid. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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9
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Choudhary VK, Mandhan K, Dash D, Bhardwaj S, Kumari M, Sharma N. Density functional theory studies on molecular geometry, spectroscopy, HOMO-LUMO and reactivity descriptors of titanium(IV) and oxidozirconium(IV) complexes of phenylacetohydroxamic acid. J Comput Chem 2022; 43:2060-2071. [PMID: 36165982 DOI: 10.1002/jcc.27004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 07/27/2022] [Accepted: 09/05/2022] [Indexed: 11/11/2022]
Abstract
The molecular geometry of new titanium(IV) and oxidozirconium(IV) phenylacetohydroxamate complexes [TiCl2 (L1)2 ] (I) and [ZrO(L1)2 ] (II) (where L1 = Potassium phenylacetohydroxamate = C6 H5 CH2 CONHOK) computed by B3LYP/6-311++G(d,p) method has shown these to be distorted octahedral and square pyramidal, respectively. A comparison of computed characteristic bond lengths (CO, CN, and NO) of complexes with that of free ligand has shown chelation through carbonyl and hydroxamic oxygen atoms (O, O coordination). The TiO/ZrO bond lengths in complexes are suggestive of weak coordination through (carbonyl CO) and strong covalent (hydroxamic NO) bonding of the ligand. The magnitude of ClTiCl bond angle involving two chloride atoms is suggestive of cis-conformation at titanium metal in (I). The thermodynamic parameters Gibbs free energy, enthalpy, entropy, nuclear internal energy, constant volume heat capacity, and internal energy of ligand and complexes have been computed. From the energies of highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO), the global reactivity descriptors such as ionization potential (IP), electron affinity (EA), chemical potential (μ), hardness (η), softness (S), electronegativity (χ), electrophilicity index (ω), and dipole moment have been calculated. The computed vibrational frequencies, 1 H and 13 C NMR spectra have substantiated the molecular structure of complexes. The thermal behavior of complexes has been studied by thermogravimetric techniques (TGA, DTG, and DTA) in N2 atmosphere has shown complexes are thermally stable.
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Affiliation(s)
| | - Kanika Mandhan
- Department of Chemistry, IEC University Baddi, Solan, Himachal Pradesh, India
| | - Dibyajit Dash
- Department of Chemistry, Sant Longowal Institute of Engineering & Technology, Longowal, Sangrur, Punjab, India
| | - Sachin Bhardwaj
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India
| | - Meena Kumari
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India
| | - Neeraj Sharma
- Department of Chemistry, Himachal Pradesh University, Summer Hill, Shimla, India
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Palladium(II) Complexes of Substituted Salicylaldehydes: Synthesis, Characterization and Investigation of Their Biological Profile. Pharmaceuticals (Basel) 2022; 15:ph15070886. [PMID: 35890184 PMCID: PMC9323974 DOI: 10.3390/ph15070886] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 07/06/2022] [Accepted: 07/14/2022] [Indexed: 02/04/2023] Open
Abstract
Five palladium(II) complexes of substituted salicylaldehydes (X-saloH, X = 4-Et2N (for 1), 3,5-diBr (for 2), 3,5-diCl (for 3), 5-F (for 4) or 4-OMe (for 5)) bearing the general formula [Pd(X-salo)2] were synthesized and structurally characterized. The crystal structure of complex [Pd(4-Et2N-salo)2] was determined by single-crystal X-ray crystallography. The complexes can scavenge 1,1-diphenyl-picrylhydrazyl and 2,2′-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) radicals and reduce H2O2. They are active against two Gram-positive (Staphylococcus aureus and Bacillus subtilis) and two Gram-negative (Escherichia coli and Xanthomonas campestris) bacterial strains. The complexes interact strongly with calf-thymus DNA via intercalation, as deduced by diverse techniques and via the determination of their binding constants. Complexes interact reversibly with bovine and human serum albumin. Complementary insights into their possible mechanisms of bioactivity at the molecular level were provided by molecular docking calculations, exploring in silico their ability to bind to calf-thymus DNA, Escherichia coli and Staphylococcus aureus DNA-gyrase, 5-lipoxygenase, and membrane transport lipid protein 5-lipoxygenase-activating protein, contributing to the understanding of the role complexes 1–5 can play both as antioxidant and antibacterial agents. Furthermore, in silico predictive tools have been employed to study the chemical reactivity, molecular properties and drug-likeness of the complexes, and also the drug-induced changes of gene expression profile (as protein- and mRNA-based prediction results), the sites of metabolism, the substrate/metabolite specificity, the cytotoxicity for cancer and non-cancer cell lines, the acute rat toxicity, the rodent organ-specific carcinogenicity, the anti-target interaction profiles, the environmental ecotoxicity, and finally the activity spectra profile of the compounds.
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İlhan-Ceylan B, Bolukbasi O, Yilmaz A, Deniz NG, Ülküseven B. Synthesis, structural and DFT studies on thiosemicarbazone-based dioxomolybdenum(VI) complexes with co-ligands. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2087514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Berat İlhan-Ceylan
- Engineering Faculty, Department of Chemistry, Division of Inorganic Chemistry, Istanbul University-Cerrahpasa, Istanbul, Avcilar, Turkey
| | - Olcay Bolukbasi
- Faculty of Science, Department of Physics, Istanbul University, Istanbul, Vezneciler, Turkey
| | - Ayberk Yilmaz
- Faculty of Science, Department of Physics, Istanbul University, Istanbul, Vezneciler, Turkey
| | - Nahide Gulsah Deniz
- Engineering Faculty, Department of Chemistry, Division of Organic Chemistry, Istanbul University-Cerrahpasa, Istanbul, Avcilar, Turkey
| | - Bahri Ülküseven
- Engineering Faculty, Department of Chemistry, Division of Inorganic Chemistry, Istanbul University-Cerrahpasa, Istanbul, Avcilar, Turkey
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12
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Soury R, Chaabene M, Haque A, Jabli M, Alenezi KM, Latif S, Abdulaziz F, Bchetnia A, Philouze C. Two novel pyrazine Zn(II)-porphyrins complexes: Synthesis, photophysical properties, structure study, DFT-Calculation and assessment of an azo dye removal from aqueous solution. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Palafox MA, Kattan D, de Pedraza Velasco ML, Isasi J, Posada-Moreno P, Rani K, Singh SP, Rastogi VK. Base pairs with 4-amino-3-nitrobenzonitrile: comparison with the natural WC pairs. Dimer and tetramer forms, Infrared and Raman spectra, and several proposed antiviral modified nucleosides. J Biomol Struct Dyn 2022:1-23. [PMID: 35583120 DOI: 10.1080/07391102.2022.2069864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Base pairs of 4-amino-3-nitrobenzonitrile (4A-3NBN) molecule with uracil, thymine and cytosine nucleobases were optimized and compared to natural Watson-Crick (WC) pairs. The slightly greater flexibility of the -NO2 group of 4A-3NBN than the N3-H group of the natural nucleobases together with a noticeable higher dipole moment of its pairs can facilitate disruption of the DNA/RNA helix formation. Several new mutagenic modified nucleosides with 4A-3NBN and 3-amino-2-nitrobenzonitrile (3A-2NBN) were proposed as antiviral prodrugs and their base pairs optimized. The special characteristics of these prodrugs appear appropriated for their clinical use. The counterpoise (CP) corrected interaction energies of the base pairs were calculated and compared to the natural ones. The M06-2X DFT method was used for this purpose. The molecular structure of 4A-3NBN was analyzed in detail and the crystal unit cell was simulated by a tetramer form and eight dimer forms. The performance of the B3LYP, X3LYP and M06-2X methods was tested on the vibrational wavenumbers in the monomer, dimer and tetramer forms of 4A-3NBN. The observed IR and Raman bands were assigned according to the optimum dimer II form determined by B3LYP and by the tetramer form calculated by M06-2X, which is the expected unit cell that forms the crystal net. The two best scaling procedures were used.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- M Alcolea Palafox
- Departamento de Química Física, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain
| | - D Kattan
- Departamento de Química Física, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain
| | - M L de Pedraza Velasco
- Dpto. de Enfermería, Facultad de Enfermería, Fisioterapia y Podología, UCM, Madrid, Spain
| | - J Isasi
- Dpto. de Química Inorgánica, Facultad de Ciencias Químicas, UCM, Madrid, Spain
| | - P Posada-Moreno
- Dpto. de Enfermería, Facultad de Enfermería, Fisioterapia y Podología, UCM, Madrid, Spain.,Instituto de Investigación Sanitaria del Hospital Clínico San Carlos (IdISSC), Madrid, Spain
| | - Kaushal Rani
- Department of Physics, Meerut College, Meerut, India
| | - S P Singh
- Department of Physics, Dr B R Ambedkar College, Mainpuri, India
| | - V K Rastogi
- Indian Spectroscopy Society, Ghaziabad, India
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Fırıncı E, Sevinçek R, Fırıncı R, Söyleyici S, Ceyhan E, Aygün M, Şahin Y. Synthesis, characterization and DFT studies of boron guanidinate compounds. INORG CHEM COMMUN 2022. [DOI: 10.1016/j.inoche.2022.109485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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15
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Çelik S, Tanış E. Toxic potential of Poly-hexamethylene biguanide hydrochloride (PHMB): A DFT, AIM and NCI analysis study with solvent effects. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113709] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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16
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Kemparajegowda, Swarup HA, Chandrasekhar S, Jayanna B, Kumara K, Lokanath N, Thimmaiah SB, Mantelingu K. Sulfuric acid-mediated synthesis of 2,5-disubstituted 1,3,4-thiadiazole via intramolecular cyclization reaction from dithioesters: An approach to crystal structure prediction, DFT studies and Hirshfeld surface analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131970] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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17
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Kumar KY, Kumar CBP, Prasad KNN, Jeon BH, Alsalme A, Prashanth MK. Microwave-assisted N-alkylation of amines with alcohols catalyzed by MnCl 2 : Anticancer, docking, and DFT studies. Arch Pharm (Weinheim) 2022; 355:e2100443. [PMID: 35137966 DOI: 10.1002/ardp.202100443] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 01/18/2022] [Accepted: 01/20/2022] [Indexed: 11/09/2022]
Abstract
A new protocol for the N-alkylation of amines with alcohols for the synthesis of tertiary amines in the presence of MnCl2 as a catalyst, under microwave conditions, is described. The advantages of this protocol include stable reaction profiles, a wide substrate variety, excellent yields, low cost, high yields, and easy workup conditions. The anticancer efficacy of all the synthesized compounds was tested in vitro against various cancer cell lines, such as MCF-7, MDA-MB-231 (human breast), HT-29, HCT 116 (colon cancer), A549 (human lung carcinoma), and Vero cells. Among the screened compounds, 3e, 3h, and 3i demonstrated potent anticancer activity, with compound 3h surpassing the reference drug cisplatin against A549, MCF7, MDA-MB-231, and HCT116 cancer cells. The introduction of an electron-withdrawing group on the phenyl ring resulted in increased anticancer activity. The most potent compounds, 3e, 3h, and 3i, were tested against VEGFR-2, HER2, and EGFR in multikinase inhibition assays, with compounds 3h and 3i showing improved potency against the HER2 kinase. The compounds formed two H-bonds with amino acids, indicating that they had a high affinity for the target HER2 kinase (PDB ID: 3RCD), according to the docking analysis. The absorption, distribution, metabolism, excretion, and toxicity properties of the optimized analogs were also assessed in vitro, enabling the discovery of promising anticancer agents. Finally, the B3LYP level was used to measure density functional theory geometry optimization and the related quantum parameters for the active compounds.
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Affiliation(s)
- K Yogesh Kumar
- Department of Chemistry, Faculty of Engineering and Technology, Jain University, Ramanagara, India
| | - C B Pradeep Kumar
- Department of Chemistry, Malnad College of Engineering, Hassan, India
| | - K N N Prasad
- Department of Physics, BNM Institute of Technology, Bengaluru, India
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul, Republic of Korea
| | - Ali Alsalme
- Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - M K Prashanth
- Department of Chemistry, BNM Institute of Technology, Bengaluru, India
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18
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Synthesis, characterization, antimicrobial and interaction studies of pteridines with human serum albumin: A combined multi-spectroscopic and computational study. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131857] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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19
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Dexlin XD, Tarika JD, Kumar SM, Mariappan A, Beaula TJ. Synthesis and DFT computations on structural, electronic and vibrational spectra, RDG analysis and molecular docking of novel Anti COVID-19 molecule 3, 5 Dimethyl Pyrazolium 3, 5 Dichloro Salicylate. J Mol Struct 2021; 1246:131165. [DOI: 10.1016/j.molstruc.2021.131165] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 07/15/2021] [Accepted: 07/21/2021] [Indexed: 10/20/2022]
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20
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Prabakarakrishnan R, Praveen S, Natarajan A, Kandasamy S, Geetha K, Elfasakhany A, Pugazhendhi A. Computational and experimental studies of Metallo organic framework on human epidermal cell line and anticancer potential. ENVIRONMENTAL RESEARCH 2021; 201:111520. [PMID: 34153332 DOI: 10.1016/j.envres.2021.111520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/26/2021] [Accepted: 05/31/2021] [Indexed: 06/13/2023]
Abstract
The pentadentate ligand and the precursors were combined to form complexes by green approach. The ligand formation was confirmed by UV-Vis, FT-IR, 1H-NMR, and LC-MS. The optimised stable structure was obtained by molecular simulation studies and the complexes were interpreted by conductivity measurements, UV-Vis, FT-IR, magnetic susceptibility, VSM, and ESR spectral studies. The redox nature of the complexes was investigated by cyclic voltammetry. The cyclic voltammogram shows complexes exhibited single electron transfer from Cu+2/Cu+1. Complexes and penta-dentate ligand were screened for in vitro cytotoxicity by MTT assay method on A431 skin cancer cell line. The ligand structural stability and biological activity were confirmed by theoretical computational studies. The magnetic behaviour showed antiferromagnetic properties at low temperature. The complexes were used as high bar magnets. Similarly, the redox behaviour showed that the complexes could be used in electroplating techniques and sensors. Clinical application revealed that the complexes had effective cytotoxicity. From the data obtained, the complexes were in the form [MLR], where L was the penta-dentate ligand and R = [C6H5COO] & R = [C6H4COO (OH)].
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Affiliation(s)
- R Prabakarakrishnan
- Department of Chemistry, Sri Chandrasekharendra Saraswathi Viswa Mahavidyalaya, Enathur, Kanchipuram, 631 561, Tamil Nadu, India
| | - S Praveen
- PG and Research Department of Chemistry, Muthurangam Govt. Arts College, Otteri, Vellore, 632 002, Tamil Nadu, India
| | - A Natarajan
- Department of Biochemistry, Lakshmi Bangaru Arts and Science College, Melmaruvathur, 603 319, Chengalpattu, Tamil Nadu, India
| | | | - K Geetha
- PG and Research Department of Chemistry, Muthurangam Govt. Arts College, Otteri, Vellore, 632 002, Tamil Nadu, India.
| | - Ashraf Elfasakhany
- Mechanical Engineering Department, College of Engineering, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Arivalagan Pugazhendhi
- School of Renewable Energy, Maejo University, Chiang Mai, 50290, Thailand; College of Medical and Health Science, Asia University, Taichung, Taiwan.
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21
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Sarkar K, Das RK. In Silico study of Rosmarinic Acid Derivatives as Novel Insulin Fibril Inhibitors. JOURNAL OF COMPUTATIONAL BIOPHYSICS AND CHEMISTRY 2021. [DOI: 10.1142/s2737416521500381] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The self-assembly of human insulin (HI) plays a crucial role in regulating amyloid fibrils. Therefore, it is a significant problem for the medical management of diabetes therapy and these findings have led us to investigate the amyloid formation and its inhibition. Few potential inhibitors have been identified to inhibit amyloid fibrils. Rosmarinic acid (RA) is one of the things that inhibits amyloid formation completely by increasing the resistivity of the amyloidogenic insulin (dimer) protein to thermal unfolding. Here, we choose different tested derivative compounds for designing amyloid inhibitors by substituting various functional groups of RA. These derivative compounds were subjected to in silico studies to determine the best drug candidates. In comparison to RA, 14 molecules have higher binding affinity and interactions with the target receptor. After frontier molecular orbitals study, ADME and toxicity analysis, the eight best compounds may act as the best inhibitors. The stability of the docked complexes was visualized by molecular dynamics (MD) simulations. This finding opens a new proposal to explore future studies with these best compounds to increase the thermal stability of the insulin dimers.
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Affiliation(s)
- Kaushik Sarkar
- Department of Chemistry, University of North Bengal, Darjeeling, West Bengal, India
| | - Rajesh Kumar Das
- Department of Chemistry, University of North Bengal, Darjeeling, West Bengal, India
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22
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Chaabene M, Gassoumi B, Soury R, Ghalla H, Jabli M, Ben Chaâbane R, Allouche AR. Insights into theoretical detection of CO2, NO, CO, O2, and O3 gases molecules using Zinc phthalocyanine with peripheral mono and tetra quinoleinoxy substituents: Molecular geometries, Electronic properties, and Vibrational analysis. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111198] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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23
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Barmpa A, Geromichalos GD, Hatzidimitriou AG, Psomas G. Nickel(II)-meclofenamate complexes: Structure, in vitro and in silico DNA- and albumin-binding studies, antioxidant and anticholinergic activity. J Inorg Biochem 2021; 222:111507. [PMID: 34139455 DOI: 10.1016/j.jinorgbio.2021.111507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 05/28/2021] [Accepted: 05/30/2021] [Indexed: 10/21/2022]
Abstract
Five novel nickel(II) complexes with the non-steroidal anti-inflammatory drug sodium meclofenamate (Na-mclf) have been synthesized and characterized in the absence or co-existence of the nitrogen-donors imidazole (Himi), 2,2'-bipyridylamine (bipyam), 2,2'-bipyridylketoxime (Hpko) and 2,9-dimethyl-1,10-phenanthroline (neoc); namely [Ni(mclf-O)2(Himi)2(MeOH)2], [Ni(mclf-O)2(MeOH)4], [Ni(mclf-O)(mclf-O,O')(bipyam)(MeOH)]·0.25MeOH, [Ni(mclf-O,O')2(neoc)] and [Ni(mclf-O)2(Hpko-N,N')2]·MeOH·0.5H2O. The affinity of the complexes for calf-thymus (CT) DNA was investigated by various techniques and intercalation is suggested as the most possible interaction mode. The interaction of the complexes for bovine and human serum albumins was also investigated in order to determine the binding constants, concluding that the complexes bind reversibly to albumins for the transportation towards their target cells or tissues and their release upon arrival at biotargets. The antioxidant activity of the compounds was evaluated via their ability to scavenge 1,1-diphenyl-picrylhydrazyl and 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) free radicals and to reduce H2O2. For the determination of the anticholinergic ability of the complexes the in vitro inhibitory activity against the enzymes acetylcholinesterase and butyrylcholinesterase was evaluated and presented promising results. The in silico molecular modeling calculations employed provide useful insights for the understanding of the mechanism of action of the studied complexes at a molecular level. This applies on both the impairment of DNA by its binding with the studied complexes and transportation through serum albumins, as well as the ability of these compounds to act as anticholinergic agents.
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Affiliation(s)
- Amalia Barmpa
- Department of General and Inorganic Chemistry, Faculty of Chemistry, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece
| | - George D Geromichalos
- Department of General and Inorganic Chemistry, Faculty of Chemistry, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece
| | - Antonios G Hatzidimitriou
- Department of General and Inorganic Chemistry, Faculty of Chemistry, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece
| | - George Psomas
- Department of General and Inorganic Chemistry, Faculty of Chemistry, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece.
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24
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Affiliation(s)
- Min Zhang
- Department of Pharmacy, Shanxi Medical University, Taiyuan, People’s Republic of China
| | - Yuye Li
- Department of Pharmacy, Shanxi Medical University, Taiyuan, People’s Republic of China
| | - Tingting Zhu
- Department of Pharmacy, Shanxi Medical University, Taiyuan, People’s Republic of China
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25
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Nguyen HT, Ngo DKT, Chau KDN, Tran PH. Imidazolium Triflate Ionic Liquid Improves the Activity of ZnCl 2 in the Synthesis of Pyrroles and Ketones. ORG PREP PROCED INT 2021. [DOI: 10.1080/00304948.2020.1868910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Hai Truong Nguyen
- Department of Organic Chemistry, Faculty of Chemistry, University of Science, Ho Chi Minh City, Vietnam
- Vietnam National University, Ho Chi Minh City, Vietnam
| | | | - Khiem Duy Nguyen Chau
- Department of Organic Chemistry, Faculty of Chemistry, University of Science, Ho Chi Minh City, Vietnam
- Vietnam National University, Ho Chi Minh City, Vietnam
| | - Phuong Hoang Tran
- Department of Organic Chemistry, Faculty of Chemistry, University of Science, Ho Chi Minh City, Vietnam
- Vietnam National University, Ho Chi Minh City, Vietnam
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26
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Dolai G, Roy S, Sen S, Giri RS, Mandal B. Crystal structure of 1-(2,4,6-trichlorobenzoyloxy) benzotriazole (TCB-OBt): observation of uncommon intermolecular oxygen–oxygen interaction and synthetic application in amidation. NEW J CHEM 2021. [DOI: 10.1039/d1nj04048k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A simple active ester (TCB-OBt) has a significant hallmark in synthetic organic chemistry and materials science.
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Affiliation(s)
- Gobinda Dolai
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Sayanta Roy
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Srijit Sen
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Rajat Subhra Giri
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Bhubaneswar Mandal
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
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27
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Raghu MS, Pradeep Kumar CB, Prashanth MK, Yogesh Kumar K, Prathibha BS, Kanthimathi G, Alissa SA, Alghulikah HA, Osman SM. Novel 1,3,5-triazine-based pyrazole derivatives as potential antitumor agents and EFGR kinase inhibitors: synthesis, cytotoxicity, DNA binding, molecular docking and DFT studies. NEW J CHEM 2021. [DOI: 10.1039/d1nj02419a] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The development of new 1,3,5-triazine-based pyrazole derivatives as effective anticancer agents.
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Affiliation(s)
- M. S. Raghu
- Department of Chemistry, New Horizon College of Engineering
- Bengaluru 560 103
- India
| | | | - M. K. Prashanth
- Department of Chemistry, B N M Institute of Technology
- Bengaluru 560 070
- India
| | - K. Yogesh Kumar
- Department of Chemistry, School of Engineering and Technology, Jain University
- Ramanagara
- India
| | - B. S. Prathibha
- Department of Chemistry, B N M Institute of Technology
- Bengaluru 560 070
- India
| | - G. Kanthimathi
- Department of Chemistry, Ramco Institute of Technology
- Rajapalayam
- India
| | - Siham Abdulrahman Alissa
- Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University
- Riyadh 11671
- Saudi Arabia
| | - Hanan Abdulrahman Alghulikah
- Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University
- Riyadh 11671
- Saudi Arabia
| | - Sameh M. Osman
- Department of Chemistry, College of Science, King Saud University
- Riyadh
- Saudi Arabia
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28
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Qi F, Song J, Huang J. Synthesis, spectral characteristics, weak interactions, electronic properties and biological activity of (E)-1-(4-hydroxybenzylidene)-4-(3-isopropylphenyl)thiosemicarbazone: An experimental and theoretical approach. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129044] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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29
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Molecular spectroscopic assembly of 3-(4-chlorophenyl)-5-[4-(propane-2-yl) phenyl] 4, 5-dihydro-1H pyrazole-1-carbothioamide, antimicrobial potential and molecular docking analysis. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128005] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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30
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Choudhary VK, Bhatt AK, Sharma N. Theoretical and spectroscopic evidence on a new triphenyltin(IV) 3,5-dinitrosalicylhydroxamate complex: synthesis, structural characterization, and biological screening. J COORD CHEM 2020. [DOI: 10.1080/00958972.2020.1747055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
| | | | - Neeraj Sharma
- Department of Chemistry, Himachal Pradesh University, Shimla, India
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31
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Physicochemical, quantum mechanical and thermoanalytical investigations of newly synthesized pentakis(2,4-dimethylphenoxo) niobium (V) as potential precursor of Nb2O5. ARAB J CHEM 2019. [DOI: 10.1016/j.arabjc.2016.12.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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32
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Vidhya V, Austine A, Arivazhagan M. Quantum chemical determination of molecular geometries and spectral investigation of 4-ethoxy-2, 3-difluoro benzamide. Heliyon 2019; 5:e02365. [PMID: 31844688 PMCID: PMC6895590 DOI: 10.1016/j.heliyon.2019.e02365] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 06/14/2019] [Accepted: 08/21/2019] [Indexed: 11/27/2022] Open
Abstract
The present work reports the application of density functional theory (DFT) at B3LYP with various basis sets which provide the relationship between the structural and spectral properties of 4-ethoxy-2, 3-difluoro benzamide (4EDFB). A Complete vibrational analysis has been performed at the density functional theory (DFT) method with various basis sets in the ground state. The results of vibrational wave numbers are in good agreement with the experimental spectra (Infrared and Raman). Energy gap of the molecule is evaluated using frontier molecular orbital energies (HOMO-LUMO). The frontier energy gap value reveals the chemical reactivity and intermolecular charge transfer occur within the molecule. Global chemical descriptors provide the local and global softness and local reactivity parameters used to identify the nucleophilic and electrophilic behavior of a specific site within the compound. The dimer structure is performed to evaluate the intermolecular hydrogen bond (O-H-O). The title molecule is capable of receiving second harmonic generation (SHG) is due to high value of hyperpolarizability indicates the NLO activity of the molecule. Apart from NLO entities, aromaticity and the molecular electrostatic potential surface (MEP) explain the hydrogen bonding and provide the reactive behavior of the molecule. The Mulliken population analysis leads to redistribution of electron density in the ring.
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Affiliation(s)
- V. Vidhya
- Department of Physics, Trichy Engineering College, Trichy, 621132, India
| | - A. Austine
- PG&Research Department of Physics, A.A.Government Arts College, Musiri, 621211, India
| | - M. Arivazhagan
- PG&Research Department of Physics, Government Arts College, Trichy, 620022, India
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33
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Chaabene M, Agren S, Allouche A, Lahcinie M, Ben Chaâbane R, Baouab MHV. Theoretical and experimental investigations of complexation with BF
3
.Et
2
O effects on electronic structures, energies and photophysical properties of Anil and tetraphenyl (hydroxyl) imidazol. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5218] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Marwa Chaabene
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Sciences of MonastirUniversity of Monastir Avenue of the Environment 5000 Monastir Tunisia
| | - Soumaya Agren
- Research Unit Materials and Organic Synthesis (UR17ES31), Preparatory Institute for Engineering Studies of MonastirUniversity of Monastir Avenue of the Environment 5000 Monastir Tunisia
| | - Abdul‐Rahman Allouche
- Institute of Light and MatterUMR5306 University of Lyon 1‐CNRS, University of Lyon 69622 Villeurbanne cedex France
| | - Mohamed Lahcinie
- Laboratory of organometallic and macromolecular chemistry‐composites Materials, Faculty of Sciences and TechnologiesCadi Ayyad University Avenue Abdelhakim Elkhattabi, BP549 40000 Marrakech Morocco
- Mohamed VI Polytechnic University Lot 660, Hay Moulay Rachid 43150 Ben Guerir Morocco
| | - Rafik Ben Chaâbane
- Laboratory of Advanced Materials and Interfaces (LIMA), Faculty of Sciences of MonastirUniversity of Monastir Avenue of the Environment 5000 Monastir Tunisia
| | - Mohamed Hassen V. Baouab
- Research Unit Materials and Organic Synthesis (UR17ES31), Preparatory Institute for Engineering Studies of MonastirUniversity of Monastir Avenue of the Environment 5000 Monastir Tunisia
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34
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Lawal IA, Lawal MM, Azeez MA, Ndungu P. Theoretical and experimental adsorption studies of phenol and crystal violet dye on carbon nanotube functionalized with deep eutectic solvent. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.110895] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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35
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Choudhary V, Bhatt A, Dash D, Sharma N. DFT calculations on molecular structures, HOMO–LUMO study, reactivity descriptors and spectral analyses of newly synthesized diorganotin(IV) 2‐chloridophenylacetohydroxamate complexes. J Comput Chem 2019; 40:2354-2363. [DOI: 10.1002/jcc.26012] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Revised: 04/23/2019] [Accepted: 06/09/2019] [Indexed: 12/21/2022]
Affiliation(s)
| | - ArvindKumar Bhatt
- Department of BiotechnologyHimachal Pradesh University Summer Hill, Shimla‐5 India
| | - Dibyajit Dash
- Department of ChemistrySant Longowal Institute of Engineering & Technology Longowal Sangrur Punjab 148106 India
| | - Neeraj Sharma
- Department of ChemistryHimachal Pradesh University Summer Hill, Shimla‐5 India
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36
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Fuentes Campo A, Sancho MI, Melo G, Dávila YA, Gasull E. In vitro and in vivo inhibition of Hass avocado polyphenol oxidase enzymatic browning by paeonol, β-cyclodextrin, and paeonol:β-cyclodextrin inclusion complex. J Biosci Bioeng 2018; 127:703-709. [PMID: 30573385 DOI: 10.1016/j.jbiosc.2018.11.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 11/01/2018] [Accepted: 11/15/2018] [Indexed: 10/27/2022]
Abstract
Polyphenol oxidase (PPO) was extracted from Hass avocados and its physicochemical properties were analyzed. The optimum pH and temperature of the enzyme were pH 7.5 and 20°C. This PPO showed a high thermal stability, since 26% of the initial activity was retained by the enzyme after heating at 60°C for 40 min. Inhibition studies were performed using different chemical reagents, and the order in the inhibition efficiency was paeonol > 4-hydroxybenzaldehyde > β-cyclodextrin (β-CD). The first two inhibitors presented a non-competitive mechanism while the inhibition by β-CD results from a mixed type mechanism. Since the aqueous solubility of paeonol (a natural compound) is very low, the inclusion complex between this drug and β-CD was obtained in solution and solid state. The stoichiometry of the paeonol:β-CD complex was 1:1 and its ΔG° of formation was -26 kJ/mol. The complexation of paeonol by β-CD not only enhances the aqueous solubility and thermal stability of the drug, but also improves the in vitro inhibition efficiency against PPO. Colorimetric analysis on avocados pulp (in vivo) showed that the inclusion complex does not increase the inhibitory effect of paeonol, remaining practically unchanged. However, the formulation of paeonol:β-CD inclusion complex allows employing this compound as PPO inhibitor in aqueous solutions.
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Affiliation(s)
- Anahí Fuentes Campo
- Universidad Nacional de San Luis, Facultad de Química, Bioquímica y Farmacia, Chacabuco 917, 5700 San Luis, Argentina
| | - Matias I Sancho
- Universidad Nacional de San Luis, Facultad de Química, Bioquímica y Farmacia, IMIBIO-CONICET, Chacabuco 917, 5700 San Luis, Argentina.
| | - Gisela Melo
- Universidad Nacional de San Luis, Facultad de Química, Bioquímica y Farmacia, IMIBIO-CONICET, Chacabuco 917, 5700 San Luis, Argentina
| | - Yamina A Dávila
- Universidad Nacional de San Luis, Facultad de Química, Bioquímica y Farmacia, INTEQUI-CONICET, Chacabuco 917, 5700 San Luis, Argentina
| | - Estela Gasull
- Universidad Nacional de San Luis, Facultad de Química, Bioquímica y Farmacia, IMIBIO-CONICET, Chacabuco 917, 5700 San Luis, Argentina
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37
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Thirunavukkarasu K, Rajkumar P, Selvaraj S, Suganya R, Kesavan M, Gunasekaran S, Kumaresan S. Vibrational (FT-IR and FT-Raman), electronic (UV–Vis), NMR (1H and 13C) spectra and molecular docking analyses of anticancer molecule 4-hydroxy-3-methoxycinnamaldehyde. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.07.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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38
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Influence of Solvent Environment on the Photophysical Properties of Maleamic Acid and Maleimide Derivatives. J SOLUTION CHEM 2018. [DOI: 10.1007/s10953-018-0790-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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39
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Alcolea Palafox M, Rastogi VK, Singh SP. FT-IR and FT-Raman spectra of 5-chlorocytosine: Solid state simulation and tautomerism. Effect of the chlorine substitution in the Watson-Crick base pair 5-chlorodeoxycytidine-deoxyguanosine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 188:418-435. [PMID: 28756258 DOI: 10.1016/j.saa.2017.07.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Revised: 04/26/2017] [Accepted: 07/13/2017] [Indexed: 06/07/2023]
Abstract
The laser Raman and IR spectra of 5-chlorocytosine have been recorded and accurately assigned in the solid state using Density functional calculations (DFT) together with the linear scaling equation procedure (LSE) and the solid state simulation of the crystal unit cell through a tetramer form. These results remarkably improve those reported previously by other authors. Several new scaling equations were proposed to be used in related molecules. The six main tautomers of the biomolecule 5-chlorocytosine were determined and optimized at the MP2 and CCSD levels, using different basis sets. The relative stabilities were compared with those obtained in cytosine and their 5-halo derivatives. Several relationships between energies, geometric parameters and NBO atomic charges were established. The effect of the chlorine substitution in the fifth position was evaluated through the stability of the Watson-Crick (WC) base pair of 5-chlorodeoxycytidine with deoxyguanosine, and through their vibrational spectra.
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Affiliation(s)
- M Alcolea Palafox
- Nofima AS - the Norwegian Institute of Food, Fisheries and Aquaculture Research, PB 210, N-1431 Ås, Norway; Departamento de Química-Física I, Facultad de Ciencias Químicas, Universidad Complutense, Ciudad Universitaria, Madrid 28040, Spain.
| | - V K Rastogi
- Internet Lab, R.D. Foundation Group of Institutions, NH-58, Kadrabad, Modinagar, Ghaziabad, India; Indian Spectroscopy Society, KC 68/1, Old Kavinagar, Ghaziabad 201 002, India.
| | - S P Singh
- Department of Physics, Dr B R Ambedkar Govt Degree College, Mainpuri 205 001, India
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40
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Structural analysis, solvent effects and intramolecular interactions in rilpivirine: A new non-nucleoside reverse transcriptase inhibitor for HIV treatment. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.050] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Gil DM, Salomón FF, Echeverría GA, Piro OE, Pérez H, Altabef AB. A detailed exploration of intermolecular interactions in 4-(4-dimethylaminobenzylideneamino)-N-(5-methyl-3-isoxazolyl)benzenesulfonamide and related Schiff bases: Crystal structure, spectral studies, DFT methods, Pixel energies and Hirshfeld surface analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 185:286-297. [PMID: 28595154 DOI: 10.1016/j.saa.2017.05.066] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 05/26/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
Abstract
The Schiff base of the title has been synthesized and its crystal structure determined by single-crystal X-ray diffraction. The compound was characterized by IR, Raman, 1H NMR, 13C NMR and electronic absorption spectra. DFT calculations provide the quantum chemical basis for the observed molecular conformation. A study of intermolecular interactions of the title compound is compared with seven other closely related structures and reveals that molecules in most of the compounds are linked by a cooperative effect of strong and weak hydrogen bonds, CH…π, and π…π stacking interactions, and also lp…π contacts. Lattice energy calculations indicate that the dispersion component is the major contribution, with the coulombic term playing a significant role in the total energy. Interaction energies for molecular pairs involving NH···N bonds indicate a dominant contribution to packing stabilization coming from coulomb component. Hirshfeld surfaces and 2D-fingerprint plots allowed us to visualize different intermolecular contacts and its relative contributions to total surface in each compound. The analysis of electrostatic potential (ESP) maps correlates well with the computed energies providing evidences on the dominant electrostatic nature of NH···N and NH···O interactions.
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Affiliation(s)
- Diego M Gil
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina.
| | - Fernando F Salomón
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina
| | - G A Echeverría
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata y IFLP (CONICET, CCT-La Plata), C. C. 67, 1900 La Plata, Argentina
| | - Oscar E Piro
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata y IFLP (CONICET, CCT-La Plata), C. C. 67, 1900 La Plata, Argentina
| | - Hiram Pérez
- Departamento de Química General e Inorgánica, Facultad de Química, Universidad de la Habana, Habana 10400, Cuba.
| | - Aida Ben Altabef
- INQUINOA (CONICET-UNT), Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, San Lorenzo 456, T4000CAN San Miguel de Tucumán, Argentina.
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John NL, Joy LK, Kumar MS, Shaiju SS, Subashini A, Sajan D. Quantitative structure and activity relationship on the biological, nonlinear and the spectroscopic properties of the Schiff base material: 4-chloro-4′bromobenzylidene aniline. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1337272] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Nimmy L. John
- Centre for Advanced Functional Materials, DST-FIST, DBT STAR College & KSCSTE SARD Supported Postgraduate and Research Department of Physics, Bishop Moore College, Alappuzha, India
| | - Lija K. Joy
- Centre for Advanced Functional Materials, DST-FIST, DBT STAR College & KSCSTE SARD Supported Postgraduate and Research Department of Physics, Bishop Moore College, Alappuzha, India
| | - M. Saravana Kumar
- Centre for Advanced Functional Materials, DST-FIST, DBT STAR College & KSCSTE SARD Supported Postgraduate and Research Department of Physics, Bishop Moore College, Alappuzha, India
| | - S. S. Shaiju
- Centre for Advanced Functional Materials, DST-FIST, DBT STAR College & KSCSTE SARD Supported Postgraduate and Research Department of Physics, Bishop Moore College, Alappuzha, India
| | - A. Subashini
- Crystal Growth and Thin Film Laboratory, School of Physics, Bharathidasan University, Tiruchirappalli, India
| | - D. Sajan
- Centre for Advanced Functional Materials, DST-FIST, DBT STAR College & KSCSTE SARD Supported Postgraduate and Research Department of Physics, Bishop Moore College, Alappuzha, India
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Mollania F, Raissi H. Evaluation of solvent and ion effects upon leflunomide adsorption characteristics on (6,0) zigzag single-walled carbon nanotube and immobilized dihydroorotate dehydrogenase activity: A computational DFT and experimental study. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.02.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Fakhar Z, Govender T, Lamichhane G, Maguire GE, Kruger HG, Honarparvar B. Computational model for the acylation step of the β-lactam ring: Potential application for l,d-transpeptidase 2 in mycobacterium tuberculosis. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.08.049] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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45
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Śmiszek-Lindert WE, Chełmecka E, Góralczyk S, Kaczmarek M. Vibrational spectroscopic (FT-IR, FT-Raman) studies, Hirshfeld surfaces analysis, and quantum chemical calculations of m-acetotoluidide and m-thioacetotoluidide. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.08.072] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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46
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New insights into the conformal stability, influence of hydrogen bonding and vibrational analysis of 2,6- and 3,5-Dihydroxyacetophenone – A comparative study. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.07.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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47
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Yoosefian M, Etminan N, Ahmadzadeh S. Solvents effect on the stability and reactivity of Tamoxifen and its nano metabolites as the breast anticancer drug. J Mol Liq 2016. [DOI: 10.1016/j.molliq.2016.09.041] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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48
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Synthesis of Novel Ether Thionocarbamates and Study on Their Flotation Performance for Chalcopyrite. MINERALS 2016. [DOI: 10.3390/min6030097] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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49
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Lawal MM, Govender T, Maguire GEM, Honarparvar B, Kruger HG. Mechanistic investigation of the uncatalyzed esterification reaction of acetic acid and acid halides with methanol: a DFT study. J Mol Model 2016; 22:235. [PMID: 27604278 DOI: 10.1007/s00894-016-3084-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 08/05/2016] [Indexed: 11/29/2022]
Abstract
Implementation of catalysts to drive reactions from reactants to products remains a burden to synthetic and organic chemists. In spite of investigations into the kinetics and mechanism of catalyzed esterification reactions, less effort has been made to explore the possibility of an uncatalyzed esterification process. Therefore, a comprehensive mechanistic perspective for the uncatalyzed mechanism at the molecular level is presented. Herein, we describe the non-catalyzed esterification reaction of acetic acid and its halide derivatives (XAc, where X= OH, F, Cl, Br, I) with methanol (MeOH) through a concerted process. The reaction in vacuum and methanol was performed using the density functional theory (DFT) method at M06-2X level with def2-TZVP basis set after a careful literature survey and computations. Esterification through cyclic 4- or 6-membered transition state structures in one- or two-step concerted mechanisms were investigated. The present study outlines the possible cyclic geometry conformations that may occur during experiments at simple ratio of reactants. The free energy of activation for acetic acid and acetyl chloride are 36 kcal mol(-1) and 21 kcal mol(-1), respectively. These are in good agreement with available experimental results from the literature. The selected quantum chemical descriptors proved to be useful tools in chemical reactivity prediction for the reaction mechanism. This quantum mechanics study can serve as a necessary step towards revisiting uncatalyzed reaction mechanisms in some classical organic reactions.
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Affiliation(s)
- Monsurat M Lawal
- Catalysis and Peptide Research Unit, School of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Thavendran Govender
- Catalysis and Peptide Research Unit, School of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Glenn E M Maguire
- Catalysis and Peptide Research Unit, School of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa.,School of Chemistry and Physics, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Bahareh Honarparvar
- Catalysis and Peptide Research Unit, School of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Hendrik G Kruger
- Catalysis and Peptide Research Unit, School of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa.
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Serdiuk IE, Roshal AD, Błażejowski J. Origin of Spectral Features and Acid–Base Properties of 3,7-Dihydroxyflavone and Its Monofunctional Derivatives in the Ground and Excited States. J Phys Chem A 2016; 120:4325-37. [DOI: 10.1021/acs.jpca.6b03290] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Illia E. Serdiuk
- Department of Chemistry, University of Gdańsk, 80-308 Gdańsk, Poland
- Institute of Chemistry, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Alexander D. Roshal
- Institute of Chemistry, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Jerzy Błażejowski
- Department of Chemistry, University of Gdańsk, 80-308 Gdańsk, Poland
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