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Udaya Kumar A, Mahesha, Pampa K, Kumara K, Hema M, Harohally NV, Lokanath N. Structural-property relationship in halogen-bonded Schiff base derivative: Crystal structure, computational and SARS-CoV-2 docking studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133409] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Structural and vibrational investigation of Cis-Trans isomers of potent insecticide allethrin. J Mol Model 2022; 28:268. [PMID: 35995874 DOI: 10.1007/s00894-022-05272-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Accepted: 08/12/2022] [Indexed: 01/18/2023]
Abstract
In this research, the optimised structural and vibrational properties of cis-trans isomers of powerful insecticide allethrin were theoretically studied in gas phase and in aqueous and ethanol solutions by using hybrid B3LYP/6-311 + + g(d,p) level of theory. The results revealed that the permittivity of solvent has influence on the properties of both isomers, thus, higher dipole moments and solvation energies are observed in water, a solvent of higher permittivity (78.355) than ethanol. Complete vibrational assignments of both isomers were done by combining the experimental IR spectrum of allethrin with the scaled quantum mechanical force field (SQMFF) methodology and the determination of corresponding scaled force constants in gas phase and aqueous solution are reported. Different signs of dihedral O2C10C6C4 angles of both isomers (negative in cis and positive in trans) support the differences in the vibrational assignments. Natural bond orbital (NBO) calculations suggest that both isomers are highly stable in gas phase and aqueous solution and that the side chains and five member's rings are involved in the n → σ* interactions. However, atoms in molecules (AIM) studies reveal a higher stability of form cis in both media than the trans one. Merz-Kollman (MK), Mulliken and natural population atomic (NPA) charges for both isomers support the higher hydration of trans isomer in aqueous media and, hence, the higher solvation energy in water (ΔGC/ZPVE = - 80.29 kJ/mol). Changes in the bond orders of O and C atoms of side chain are observed in water as a consequence of hydration. The higher stability of the cis form in the above solutions could be explained by the lower solvation energy in water, as supported by AIM calculations. The studies of frontier orbital reveal that the cis form in both media is sligthly more reactive than the trans form.
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Thamarai A, Vadamalar R, Kumaran S, Ramesh P, Muthu S, Aayisha S, Raja M, Narayana B, Irfan A. Investigations on spectroscopic, ADMET properties and drug-likeness, molecular docking, chemical properties of (2E)-3-(biphenyl-4-yl)-1-(2,4-dichlorophenyl)-prop-2-en-1-one by combined density-functional theory. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132973] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Synthesis, in vitro and in silico antitumor evaluation of 3-(2,6-dichlorophenyl)-1,5-diphenylpentane-1,5‑dione: Structure, spectroscopic, RDG, Hirshfeld and DFT based analyses. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132002] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Kaya Y, Erçağ A, Serdaroğlu G, Kaya S, Grillo IB, Rocha GB. Synthesis, spectroscopic characterization, DFT calculations, and molecular docking studies of new unsymmetric bishydrazone derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131224] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Castillo MV, Iramain MA, Davies L, Manzur ME, Brandán SA. Structural study and vibrational assignments of FT-IR and FT-Raman spectra of powerful pesticide 2,4’-DDT. Its comparison with 4,4’-DDT. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Iramain MA, Castillo MV, Davies L, Manzur ME, Brandán SA. Structural and SQMFF study of potent insecticide 4′,4′-DDT combining the FT-IR and FT-Raman spectra with DFT calculations. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.126964] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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8
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Alvarez Escalada FC, Ledesma AE. Impact of temperature changes and pH on aqueous solutions of TCAB, a derived propanil contaminant. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 222:117146. [PMID: 31174153 DOI: 10.1016/j.saa.2019.117146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 05/08/2019] [Accepted: 05/21/2019] [Indexed: 06/09/2023]
Abstract
3,4,3',4'-tetrachloroazobenzene known as TCAB is an unwanted product derivate from the degradation of propanil herbicide. In this work UV-visible and infrared spectroscopies were used to experimentally explore the impact of pH and temperature changes of TCAB in aqueous and ethanol solutions. Two isomeric forms, cis and trans, are present in solution. The density functional theory (DFT) with PCM methodology was used to analyze the stability of each isomer in solution phase by the evaluation of solvation energy and frontier orbital energies of TCBA at 25 and 40 °C. This compound has been studied from room temperature to 50 °C, revealing the weakening of trans form with an increment of cis form in ethanol and high temperature. Interestingly, under acid conditions the protonated azo compound was evidenced in solution. We found that the cis form is predominant in aqueous solution at 40 °C and 30 min. Finally, FTIR studies show that the increasing of the temperature promote irreversible structural changes via a trans to cis interconversion process. The derivative results from this study may contributed to understanding of transformation of TCAB in aqueous solution by pH and temperature changes.
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Affiliation(s)
- Fanny C Alvarez Escalada
- Departamento Académico de Química, Facultad de Ciencias Exactas y Tecnologías, FCEyT, Universidad Nacional de Santiago del Estero, UNSE, Av. Belgrano Sur 1912, 4200 Santiago del Estero, Argentina
| | - Ana E Ledesma
- CIBAAL-UNSE- CONICET, Departamento Académico de Química, Facultad de Ciencias Exactas y Tecnologías, Universidad Nacional de Santiago del Estero, Av. Belgrano Sur 1912, 4200 Santiago del Estero, Argentina.
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Castillo MV, Iramain MA, Davies L, Manzur ME, Brandán SA. Evaluation of the structural properties of powerful pesticide dieldrin in different media and their complete vibrational assignment. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.10.065] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Eşme A, Sağdınç SG. Molecular structures, spectroscopic (FT-IR, NMR, UV) studies, NBO analysis and NLO properties for tautomeric forms of 1,3-dimethyl-5-(phenylazo)-6-aminouracil by density functional method. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 188:443-455. [PMID: 28756260 DOI: 10.1016/j.saa.2017.07.034] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Revised: 07/12/2017] [Accepted: 07/20/2017] [Indexed: 06/07/2023]
Abstract
The equilibrium geometry, nuclear magnetic resonance (NMR) and UV-Vis analysis, and vibrational frequencies for the azo and hydrazone isomers of 1,3-dimethyl-5-(phenylazo)-6-aminouracil have been performed using density functional theory (DFT/B3LYP) method with 6-311G(d,p) basis set. A detailed interpretation of the vibrational spectra has been made on the basis of the calculated potential energy distribution (PED) obtained from the Vibrational Energy Distribution Analysis (VEDA4) program. The 1H NMR chemical shifts with respect to TMS were calculated by the gauge independent atomic orbital (GIAO) method and compared with the experimental data. Stability of the molecule arising from hyper conjugative interactions, charge delocalization has been analyzed using natural bond orbital (NBO) analysis. Using the TD-DFT method, electronic absorption spectra in CHCl3 solvent of the title compound have been predicted, and good agreement is determined with the experimental one. The NLO properties such as mean polarizability (⟨α⟩), the anisotropy of the polarizability (⟨Δα⟩) and the mean first-order hyperpolarizability (⟨β⟩) were computed by using finite field method. The computed values of μ, α and β for the azo and hydrazone forms of the title molecule are 5.4717 and 3.8905 D, 2.7773×10-23 and 2.7598×10-23esu, and 3.4499×10-30 and 6.8504×10-30esu, respectively. The high β values and non-zero values of μ indicate that the title compound might be a good candidate for NLO material.
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Affiliation(s)
- Aslı Eşme
- Department of Mathematics and Science Education, Faculty of Education, Kocaeli University, 41380 Umuttepe, Kocaeli, Turkey.
| | - Seda Güneşdoğdu Sağdınç
- Department of Physics, Science and Art Faculty, Kocaeli University, 41380 Umuttepe, Kocaeli, Turkey
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Castillo MV, Pergomet JL, Carnavale GA, Davies L, Zinczuk J, Brandán SA. FTIR, FTRaman, UV–Visible and NMR spectroscopic studies on 3,3′,4,4′-tetrachloroazoxybenzene, an azoxybenzene derivative with toxic effects. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.04.043] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Toy M, Tanak H. Molecular structure and vibrational and chemical shift assignments of 3'-chloro-4-dimethylamino azobenzene by DFT calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 152:530-536. [PMID: 25468435 DOI: 10.1016/j.saa.2014.11.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2014] [Revised: 10/25/2014] [Accepted: 11/01/2014] [Indexed: 06/04/2023]
Abstract
In the present work, a combined experimental and theoretical study on ground state molecular structure, spectroscopic and nonlinear optical properties of azo compound 3'-chloro-4-dimethlamino azobenzene are reported. The molecular geometry, vibrational wavenumbers and the first order hyperpolarizability of the title compound were calculated with the help of density functional theory computations. The optimized geometric parameters obtained by using DFT (B3LYP/6-311++G(d,p)) show good agreement with the experimental data. The vibrational transitions were identified based on the recorded FT-IR spectra in the range of 4000-400cm(-1) for solid state. The (1)H isotropic chemical shifts with respect to TMS were also calculated using the gauge independent atomic orbital (GIAO) method and compared with the experimental data. Using the TD-DFT method, electronic absorption spectra of the title compound have been predicted, and good agreement is determined with the experimental ones. To investigate the NLO properties of the title compound, the polarizability and the first hyperpolarizability were calculated using the density functional B3LYP method with the 6-311++G(d,p) basis set. According to results, the title compound exhibits non-zero first hyperpolarizability value revealing second order NLO behavior. In addition, DFT calculations of the title compound, molecular electrostatic potential and frontier molecular orbitals were also performed at 6-311++G(d,p) level of theory.
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Affiliation(s)
- Mehmet Toy
- Faculty of Education, Department of Science Education, Amasya University, Amasya, Turkey.
| | - Hasan Tanak
- Department of Physics, Faculty of Arts and Sciences, Amasya University, 05100 Amasya, Turkey
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Romani D, Márquez MJ, Márquez MB, Brandán SA. Structural, topological and vibrational properties of an isothiazole derivatives series with antiviral activities. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.07.038] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Romani D, Brandán SA. Structural and spectroscopic studies of two 1,3-benzothiazole tautomers with potential antimicrobial activity in different media. Prediction of their reactivities. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.03.018] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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