Joint analyses model for total cholesterol and triglyceride in human serum with near-infrared spectroscopy

Changeable moving window-standard normal variable transformation for visible-NIR spectroscopic analyses

Based on the assumption of point-by-point local linearity, the changeable moving window-standard normal variable (CMW-SNV) was proposed as a reasonable improvement of the classical SNV. The three examples of quantitative and qualitative visible-near-infrared (Vis-NIR) analysis, quantifications of soil organic matter and corn meal moisture, and discriminant of rice seeds identification, were used to validate the effects of the CMW-SNV, SNV and equal segmentation SNV (ES-SNV) methods. The ES-SNV is another improvement of the SNV, but its algorithm would cause artificial discontinuities of the corrected spectrum. The SNV, ES-SNV and CMW-SNV corrected spectra were used to establish partial least squares (PLS) or partial least squares-discriminant analysis (PLS-DA) models respectively. For soil and corn meal datasets in modeling, the CMW-SNV-PLS models were both significantly better than the global SNV-PLS models; the root mean square errors of prediction in modeling (SEPM) values had the relative decrease of 26.4% and 6.6% respectively. For rice seeds dataset in modeling, the CMW-SNV-PLS-DA model was significantly better than the global SNV-PLS-DA model; the total recognition-accuracy rates in modeling (RARM) value increased by 2.1%. For all three datasets, the CMW-SNV models were better than (or close to) ones of the ES-SNV models. The equidistant combination (EC) and wavelength step-by-step phase-out (WSP) methods were used to perform wavelength selection on the CMW-SNV corrected spectra, determining the optimal EC-WSP-PLS or EC-WSP-PLS-DA models. In independent validation of three datasets, the high precision and high recognition accuracy rates validation results were all obtained. The CMW-SNV was a localized natural improvement of the classic global SNV method, and its correction maintained continuity of the spectra. The number of wavelengths m of the correction window represented the scale of localized SNV, and the algorithm platform of CMW-SNV also included the optimization of parameter m, making the localized CMW-SNV method more reasonable.

A methodological approach to preprocessing FTIR spectra of adulterated sesame oil

Fourier transform infrared (FTIR) spectroscopy is established as an effective and fast method for the confirmation of the authenticity of food and among other, edible oils. However, no standard procedure is available for applying preprocessing as a vital step in obtaining accurate results from spectra. This study proposes a methodological approach to preprocessing FTIR spectra of sesame oil adulterated with vegetable oils (canola oil, corn oil, and sunflower oil). The primary preprocessing methods investigated are orthogonal signal correction (OSC), standard normal variate transformation (SNV), and extended multiplicative scatter correction (EMSC). Other preprocessing methods are used both as standalone methods and in combination with the primary preprocessing methods. The preprocessing results are compared using partial least squares regression (PLSR). OSC alone or with detrending were the most accurate in predicting the adulteration level of sesame oil, with a maximum coefficient of prediction (R²_p) range of 0.910 to 0.971 for different adulterants.

Rapid determination of triglyceride and glucose levels in Drosophila melanogaster induced by high-sugar or high-fat diets based on near-infrared spectroscopy

Triglyceride and glucose levels are important indicators for determining metabolic syndrome, one of the leading public-health burdens worldwide. Drosophila melanogaster is an ideal model for investigating metabolic diseases because it has 70% homology to human genes and its regulatory mechanism of energy metabolism homeostasis is highly similar to that of mammals. However, traditional analytical methods of triglyceride and glucose are time-consuming, laborious, and costly. In this study, a simple, practical, and reliable near-infrared (NIR) spectroscopic analysis method was developed for the rapid determination of glucose and triglyceride levels in an in vivo model of metabolic disorders using Drosophila induced by high-sugar or high-fat diets. The partial least squares (PLS) model was constructed and optimized using different spectral regions and spectral pretreatment methods. The overall results had satisfactory prediction performance. For Drosophila induced by high-sugar diets, the correlation coefficient (R_P) and root mean square error of prediction (RMSEP) were 0.919 and 0.228 mmoL gprot^-1 for triglyceride and 0.913 and 0.143 mmoL gprot^-1 for glucose respectively; for Drosophila induced by high-fat diets, the R_P and RMSEP were 0.871 and 0.097 mmoL gprot^-1 for triglyceride and 0.853 and 0.154 mmoL gprot^-1 for glucose, respectively. This study demonstrated the potential of using NIR spectroscopy combined with PLS in the determination of triglyceride and glucose levels in Drosophila, providing a rapid and effective method for monitoring metabolite levels during disease development and a possibility for evaluating metabolic diseases in humans in clinical practice.

Identification of gallbladder cancer by direct near-infrared measurement of raw bile combined with two-trace two-dimensional correlation analysis

We demonstrated the utility of direct near-infrared (NIR) bile analysis for the identification of gallbladder (GB) cancer by employing two-trace two-dimensional (2T2D) correlation analysis to recognize dissimilar spectral features among diverse bile samples for potential improvement of discrimination accuracy. To represent more diverse clinical cases for reliable assessment, bile samples obtained from five normal, 44 gallstone, 25 GB polyp, six hepatocellular cancer (HCC), and eight GB cancer subjects were analyzed. Due to the altered metabolic pathways by carcinogenesis, the NIR spectral features of GB cancer samples, including intensity ratios of main peaks, were different from those of other sample groups. The differentiation of GB cancer in the principal component (PC) score domain was mediocre and subsequent discrimination accuracy based on linear discriminant analysis (LDA) was 88.5%. When 2T2D slice spectra were obtained using a reference spectrum constructed by the linear combination of the spectra of five pure representative bile metabolites and employed, the accuracy was improved to 95.6%. The sensitive recognition of dissimilar spectral features in GB cancer by 2T2D correlation analysis was responsible for the enhanced discrimination.

Visible and Near-Infrared Spectroscopy Combined With Bayes Classifier Based on Wavelength Model Optimization Applied to Wine Multibrand Identification

The identification of high-quality wine brands can avoid adulteration and fraud and protect the rights and interests of producers and consumers. Since the main components of wine are roughly the same, the characteristic components that can distinguish wine brands are usually trace amounts and not unique. The conventional quantitative detection method for brand identification is complicated and difficult. The naive Bayes (NB) classifier is an algorithm based on probability distribution, which is simple and particularly suitable for multiclass discriminant analysis. However, the absorbance probability between spectral wavelengths is not necessarily strongly independent, which limits the application of Bayes method in spectral pattern recognition. This research proposed a Bayes classifier algorithm based on wavelength optimization. First, a large-scale wavelength screening for equidistant combination (EC) was performed, and then wavelength step-by-step phase-out (WSP) was carried out to reduce the correlation between wavelengths and improve the accuracy of Bayes discrimination. The proposed EC-WSP-Bayes method was applied to the 5-category discriminant analysis of wine brand identification based on visible and near-infrared (Vis-NIR) spectroscopy. Among them, four types of wine brands were collected from regular sales channels as identification brands. The fifth type of samples was composed of 21 other commercial brand wines and home-brewed wines from various sources, as the interference brand. The optimal EC-WSP-Bayes model was selected, the corresponding wavelength combination was 404, 600, 992, 2,070, 2,266, and 2,462 nm located in the visible light, shortwave NIR, and combination frequency regions. In modeling and independent validation, the total recognition accuracy rate (RAR Total ) reached 98.1 and 97.6%, respectively. The technology is quick and easy, which is of great significance to regulate the alcohol market. The proposed model of less-wavelength and high-efficiency (N = 6) can provide a valuable reference for small special instruments. The proposed integrated chemometric method can reduce the correlation between wavelengths, improve the recognition accuracy, and improve the applicability of the Bayesian method.

Extraction of Reduced Infrared Biomarker Signatures for the Stratification of Patients Affected by Parkinson’s Disease: An Untargeted Metabolomic Approach

An untargeted Fourier transform infrared (FTIR) metabolomic approach was employed to study metabolic changes and disarrangements, recorded as infrared signatures, in Parkinson’s disease (PD). Herein, the principal aim was to propose an efficient sequential classification strategy based on SELECT-LDA, which enabled optimal stratification of three main categories: PD patients from subjects with Alzheimer’s disease (AD) and healthy controls (HC). Moreover, sub-categories, such as PD at the early stage (PDI) from PD in the advanced stage (PDD), and PDD vs. AD, were stratified. Every classification step with selected wavenumbers achieved 90.11% to 100% correct assignment rates in classification and internal validation. Therefore, selected metabolic signatures from new patients could be used as input features for screening and diagnostic purposes.

Application of FTIR Spectroscopy for Quantitative Analysis of Blood Serum: A Preliminary Study

The aim of this study was to analyze the possibility of simultaneous determination of the concentration of components from the characteristics of FTIR spectra using the example of a model blood serum. To prepare model solutions, a set of freeze-dried control sera based on bovine blood serum was used, certified for approximately 38 parameters. Based on the values of the absorbance and areas of absorption bands in the FTIR spectra of model solutions, a regression equation was constructed by solving a nonlinear problem using the generalized reduced gradient method. By using the absorbance of the absorption bands at 1717 and 3903 cm⁻¹ and the areas of the absorption bands at 616, 3750, and 3903 cm⁻¹, it is possible to simultaneously determine the concentrations of 38 components with an error of less than 0.1%. The results obtained confirm the potential clinical use of FTIR spectroscopy as a reagent-free express method for the analysis of blood serum. However, its practical implementation requires additional research, in particular, analysis of real blood serum samples and validation of the method.

Simultaneous detection of glucose, triglycerides, and total cholesterol in whole blood by Fourier-Transform Raman spectroscopy

In this paper, a reagent-free simultaneous and direct detection method of three analytes in human blood based on Fourier-transform Raman (FT-Raman) spectroscopy with 1064 nm laser radiation was proposed for the first time. A total of 161 human blood samples were characterized by FT-Raman spectroscopy under the excitation laser source of 1064 nm. In order to achieve a robust regression model, the Nonlinear Iterative Partial Least Squares (NIPALS) with orthogonal signal correction (OSC) algorithm and sample set partition based on a joint x-y distance (SPXY) is used to establish multivariate calibration models. The root means square error of cross-validation (RMSECV), root mean square error of prediction (RMSEP), correlation coefficients (R²) and ratio of performance to deviation (RPD) were 0.34255 mg/dL, 0.3662 mg/dL, 0.99982 and 56.3524 for glucose, 0.33656 mg/dL, 0.75736 mg/dL, 0.99967 and 34.9169 for total cholesterol (TC), and 0.29956 mg/dL, 0.27469 mg/dL, 0.99998 and 173.5098 for triglycerides (TG), respectively. The analysis results showed that the proposed method could be able to accurately predict the concentration of glucose, TC and TG in blood. This method can instantaneous multi-component detection on whole blood.

Rapid and simultaneous analysis of multiple wine quality indicators through near-infrared spectroscopy with twice optimization for wavelength model

Alcohol, total sugar, total acid, and total phenol contents are the main indicators of wine quality detection. This study aims to establish simultaneous analysis models for the four indicators through near-infrared (NIR) spectroscopy with wavelength optimization. A Norris derivative filter (NDF) platform with multiparameter optimization was established for spectral pretreatment. The optimal parameters (i.e., derivative order, number of smoothing points, and number of differential gaps) were (2, 9, 3) for alcohol, (1, 19, 5) for total sugar, (1, 17, 11) for total acid, and (1, 1, 1) for total phenol. The equidistant combination-partial least squares (EC-PLS) was used for large-scale wavelength screening. The wavelength step-by-step phase-out PLS (WSP-PLS) and exhaustive methods were used for secondary optimization. The final optimization models for the four indicators included 7, 10, 15, and 13 wavelengths located in the overtone or combination regions, respectively. In an independent validation, the root mean square errors, correlation coefficient for prediction (i.e., SEP and R_P), and ratio of performance-to-deviation (RPD) were 0.41 v/v, 0.947, and 3.2 for alcohol; 1.48 g/L, 0.992, and 6.8 for total sugar; 0.68 g/L, 0.981, and 5.1 for total acid; and 0.181 g/L, 0.948, and 2.9 for total phenol. The results indicate high correlation, low error, and good overall prediction performance. Consequently, the established reagent-free NIR analytical models are important in the rapid and real-time quality detection of the wine fermentation process and finished products. The proposed wavelength models provide a valuable reference for designing small dedicated instruments.

A new ensemble modeling method for multivariate calibration of near infrared spectra

Ensemble modeling has gained increasing attention for improving the performance of quantitative models in near infrared (NIR) spectral analysis. Based on Monte Carlo (MC) resampling, least absolute shrinkage and selection operator (LASSO) and partial least squares (PLS), a new ensemble strategy named MC-LASSO-PLS is proposed for NIR spectral multivariate calibration. In this method, the training subsets for building the sub-models are generated by sampling from both samples and variables to ensure the diversity of the models. In detail, a certain number of samples as sample subsets are randomly selected from training set. Then, LASSO is used to shrink the variables of the sample subset to form the training subset, which is used to build the PLS sub-model. This process is repeated N times and N sub-models are obtained. Finally, the predictions of these sub-models are used to produce the final prediction by simple average. The prediction ability of the proposed method was compared with those of LASSO-PLS, MC-PLS and PLS models on the NIR spectra of corn, blend oil and orange juice samples. The superiority of MC-LASSO-PLS in prediction ability is demonstrated.

Rapid and simultaneous analysis of direct and indirect bilirubin indicators in serum through reagent-free visible-near-infrared spectroscopy combined with chemometrics

Indirect (IBil), direct (DBil) and total (TBil) bilirubin are important clinical indicators of hepatobiliary diseases, which require rapid detection in diagnosis and treatment. IBil and DBil have a structural relationship with several macromolecules in hepatobiliary metabolism. Here, the rapid analysis models for bilirubin indicators using serum visible-near-infrared (Vis-NIR) spectroscopy were established. Norris derivative filter with optimisation was used for spectral pretreatment; the optimal parameters (derivative order, number of smoothing points, number of differential gaps) were (2, 15, 9) for IBil; (2, 13, 9) for DBil, respectively. Equidistant combination-partial least squares (EC-PLS) was used for large-scale wavelength screening. Wavelength step-by-step phase-out PLS (WSP-PLS) was used for secondary wavelength optimisation. The wavelength models of the optimal EC-WSP-PLS for IBil and DBil included 11 and 18 wavelengths, respectively. In independent validation, the root-mean-square errors and correlation coefficient for prediction (SEP, R_P), and ratio of performance-to-deviation (RPD) were 0.90 μmol L^-1, 0.975, and 4.4 for IBil; 0.71 μmol L^-1, 0.955, and 3.3 for DBil, respectively. TBil was subjected to spectral analysis, and the summation of the prediction values of IBil and DBil was compared. The latter was obviously better, and SEP, R_P, RPD were 0.82 μmol L^-1, 0.990, 7.1, respectively. The results for IBil, DBil and TBil indicated high correlation, low error and good overall prediction ability and confirmed the feasibility of the simultaneous analysis of bilirubin indicators through reagent-free serum Vis-NIR spectroscopy. The proposed method is crucial for the rapid screening of large populations and the treatment of hepatobiliary diseases.

Optimal partner wavelength combination method applied to NIR spectroscopic analysis of human serum globulin

Human serum globulin (GLB), which contains various antibodies in healthy human serum, is of great significance for clinical trials and disease diagnosis. In this study, the GLB in human serum was rapidly analyzed by near infrared (NIR) spectroscopy without chemical reagents. Optimal partner wavelength combination (OPWC) method was employed for selecting discrete information wavelength. For the OPWC, the redundant wavelengths were removed by repeated projection iteration based on binary linear regression, and the result converged to stable number of wavelengths. By the way, the convergence of algorithm was proved theoretically. Moving window partial least squares (MW-PLS) and Monte Carlo uninformative variable elimination PLS (MC-UVE-PLS) methods, which are two well-performed wavelength selection methods, were also performed for comparison. The optimal models were obtained by the three methods, and the corresponding root-mean-square error of cross validation and correlation coefficient of prediction (SECV, R_P,CV) were 0.813 g L^-1 and 0.978 with OPWC combined with PLS (OPWC-PLS), and 0.804 g L^-1 and 0.979 with MW-PLS, and 1.153 g L^-1 and 0.948 with MC-UVE-PLS, respectively. The OPWC-PLS and MW-PLS methods achieved almost the same good results. However, the OPWC only contained 28 wavelengths, so it had obvious lower model complexity. Thus it can be seen that the OPWC-PLS has great prediction performance for GLB and its algorithm is convergent and rapid. The results provide important technical support for the rapid detection of serum.

Spectral noise-to-signal ratio priority method with application for visible and near-infrared analysis of whole blood viscosity

Whole blood viscosity (WBV) is a group of important clinical indicators of cardio-cerebral vascular diseases. Existing detection methods for WBV are complex, making them inconvenient for large population screening. Blood viscosity is closely related to the deformability and aggregation of erythrocytes, which are associated with haemoglobin. Haemoglobin has obvious near-infrared (NIR) spectral absorption. Scattering occurs when NIR light enters a viscous blood sample, and its scattering degree is correlated with blood viscosity. Based on repeated spectral measurements and spectral similarity, spectral noise-to-signal ratio (NSR) was proposed to quantify the spectral scattering effect in the blood sample. A novel selection method of piecewise-continuous wavelengths, named NSR priority-partial least squares (NSRP-PLS), was proposed and applied for visible-NIR quantitative analysis of WBV with high, medium and low shear rates [WBV(H), WBV(M), WBV(L)]. Modelling was separately performed by gender to allow for systematic gender differences in blood viscosity. For the NIR-predicted and clinically measured values of the three WBV indicators in independent validation, the root mean square errors for prediction (SEP) were 0.498, 0.222 and 0.193 (mPa·s), respectively. And the correlation coefficients (R_P) were 0.927, 0.934 and 0.927, respectively. Compared with the three current well-performing methods (MW-PLS, CARS-PLS and SPA-PLS), the proposed NSRP-PLS method achieved better predictive accuracy. Results indicated that visible-NIR spectroscopy combined with the NSRP-PLS method can be used for the quantitative analysis of WBV. The proposed analytical method is rapid, reagent-free and is scientific and meaningful for cardio-cerebral vascular diseases screening in large populations.

Rapid and non-destructive analysis for the identification of multi-grain rice seeds with near-infrared spectroscopy

The rapid and non-destructive discriminant analysis of rice seeds has great significance for large-scale agriculture. Using near-infrared (NIR) diffuse-reflectance spectroscopy with partial least squares-discriminant analysis (PLS-DA), a variety identification method of multi-grain rice seeds was developed. The equidistant combination method was adopted for large-range wavelength screening. A step-by-step phase-out method was proposed to eliminate interference wavelengths and improve the predicted effect. The optimal wavelength model was a combination of 54 wavelengths within 808-974 nm of the short-NIR region. One type of pure rice variety (Y Liangyou 900) was used for identification (negative). Positive samples included the other four pure varieties and contamination of Y Liangyou 900 by the above four varieties. The recognition-accuracy rates for positive, negative and total validation samples reached 93.1%, 95.1%, and 94.3%, respectively. In the long-NIR region, the local optimal wavelength model was a combination of 49 wavelengths within 1188-1650 nm, and the recognition-accuracy rates for positive, negative and total validation samples were 90.3%, 94.1%, and 92.5%, respectively. Results confirmed the feasibility of NIR spectroscopy for variety identification of multi-grain rice seeds. The proposed two discrete-wavelength models located in the short- and long-NIR regions can provide valuable reference to a dedicated spectrometer.

A rapid quantification method for the screening indicator for β-thalassemia with near-infrared spectroscopy

Near-infrared (NIR) spectroscopy combined with chemometrics was applied to rapidly analyse haemoglobin A2 (HbA₂) for β-thalassemia screening in human haemolysate samples. The relative content indicator HbA₂ was indirectly quantified by simultaneous analysis of two absolute content indicators (Hb and Hb∙HbA₂). According to the comprehensive prediction effect of the multiple partitioning of calibration and prediction sets, the parameters were optimized to achieve modelling stability, and the preferred models were validated using the samples not involved in modelling. Savitzky-Golay smoothing was firstly used for the spectral pretreatment. The absorbance optimization partial least squares (AO-PLS) was used to eliminate high-absorption wave-bands appropriately. The equidistant combination PLS (EC-PLS) was further used to optimize wavelength models. The selected optimal models were I=856nm, N=16, G=1 and F=6 for Hb and I=988nm, N=12, G=2 and F=5 for Hb∙HbA₂. Through independent validation, the root-mean-square errors and correlation coefficients for prediction (RMSEP, R_P) were 3.50gL^-1 and 0.977 for Hb and 0.38gL^-1 and 0.917 for Hb∙HbA₂, respectively. The predicted values of relative percentage HbA₂ were further calculated, and the calculated RMSEP and R_P were 0.31% and 0.965, respectively. The sensitivity and specificity for β-thalassemia both reached 100%. Therefore, the prediction of HbA₂ achieved high accuracy for distinguishing β-thalassemia. The local optimal models for single parameter and the optimal equivalent model sets were proposed, providing more models to match possible constraints in practical applications. The NIR analysis method for the screening indicator of β-thalassemia was successfully established. The proposed method was rapid, simple and promising for thalassemia screening in a large population.