1
|
Pirutin SK, Jia S, Yusipovich AI, Shank MA, Parshina EY, Rubin AB. Vibrational Spectroscopy as a Tool for Bioanalytical and Biomonitoring Studies. Int J Mol Sci 2023; 24:ijms24086947. [PMID: 37108111 PMCID: PMC10138916 DOI: 10.3390/ijms24086947] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 03/30/2023] [Accepted: 04/04/2023] [Indexed: 04/29/2023] Open
Abstract
The review briefly describes various types of infrared (IR) and Raman spectroscopy methods. At the beginning of the review, the basic concepts of biological methods of environmental monitoring, namely bioanalytical and biomonitoring methods, are briefly considered. The main part of the review describes the basic principles and concepts of vibration spectroscopy and microspectrophotometry, in particular IR spectroscopy, mid- and near-IR spectroscopy, IR microspectroscopy, Raman spectroscopy, resonance Raman spectroscopy, Surface-enhanced Raman spectroscopy, and Raman microscopy. Examples of the use of various methods of vibration spectroscopy for the study of biological samples, especially in the context of environmental monitoring, are given. Based on the described results, the authors conclude that the near-IR spectroscopy-based methods are the most convenient for environmental studies, and the relevance of the use of IR and Raman spectroscopy in environmental monitoring will increase with time.
Collapse
Affiliation(s)
- Sergey K Pirutin
- Faculty of Biology, Shenzhen MSU-BIT University, No. 1, International University Park Road, Dayun New Town, Longgang District, Shenzhen 518172, China
- Faculty of Biology, Lomonosov Moscow State University, GSP-1, Leninskie Gory, 119991 Moscow, Russia
- Institute of Theoretical and Experimental Biophysics of Russian Academy of Sciences, Institutskaya St. 3, 142290 Pushchino, Russia
| | - Shunchao Jia
- Faculty of Biology, Shenzhen MSU-BIT University, No. 1, International University Park Road, Dayun New Town, Longgang District, Shenzhen 518172, China
| | - Alexander I Yusipovich
- Faculty of Biology, Lomonosov Moscow State University, GSP-1, Leninskie Gory, 119991 Moscow, Russia
| | - Mikhail A Shank
- Faculty of Biology, Shenzhen MSU-BIT University, No. 1, International University Park Road, Dayun New Town, Longgang District, Shenzhen 518172, China
- Faculty of Biology, Lomonosov Moscow State University, GSP-1, Leninskie Gory, 119991 Moscow, Russia
| | - Evgeniia Yu Parshina
- Faculty of Biology, Lomonosov Moscow State University, GSP-1, Leninskie Gory, 119991 Moscow, Russia
| | - Andrey B Rubin
- Faculty of Biology, Shenzhen MSU-BIT University, No. 1, International University Park Road, Dayun New Town, Longgang District, Shenzhen 518172, China
- Faculty of Biology, Lomonosov Moscow State University, GSP-1, Leninskie Gory, 119991 Moscow, Russia
| |
Collapse
|
2
|
Zavafer A, Ball MC. Good vibrations: Raman spectroscopy enables insights into plant biochemical composition. FUNCTIONAL PLANT BIOLOGY : FPB 2023; 50:1-16. [PMID: 36592984 DOI: 10.1071/fp21335] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 09/20/2022] [Indexed: 06/17/2023]
Abstract
Non-invasive techniques are needed to enable an integrated understanding of plant metabolic responses to environmental stresses. Raman spectroscopy is one such technique, allowing non-destructive chemical characterisation of samples in situ and in vivo and resolving the chemical composition of plant material at scales from microns to metres. Here, we review Raman band assignments of pigments, structural and non-structural carbohydrates, lipids, proteins and secondary metabolites in plant material and consider opportunities this technology raises for studies in vascular plant physiology.
Collapse
Affiliation(s)
- Alonso Zavafer
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 2000, Australia; and Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2001, Australia; and Present address: Department Biological Sciences and Yousef Haj-Ahmad Department of Engineering, Brock University, St. Catherines, ON, Canada
| | - Marilyn C Ball
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 2000, Australia
| |
Collapse
|
3
|
Barták M, Hájek J, Orekhova A, Villagra J, Marín C, Palfner G, Casanova-Katny A. Inhibition of Primary Photosynthesis in Desiccating Antarctic Lichens Differing in Their Photobionts, Thallus Morphology, and Spectral Properties. Microorganisms 2021; 9:microorganisms9040818. [PMID: 33924436 PMCID: PMC8070113 DOI: 10.3390/microorganisms9040818] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 04/02/2021] [Accepted: 04/07/2021] [Indexed: 11/16/2022] Open
Abstract
Five macrolichens of different thallus morphology from Antarctica (King George Island) were used for this ecophysiological study. The effect of thallus desiccation on primary photosynthetic processes was examined. We investigated the lichens' responses to the relative water content (RWC) in their thalli during the transition from a wet (RWC of 100%) to a dry state (RWC of 0%). The slow Kautsky kinetics of chlorophyll fluorescence (ChlF) that was recorded during controlled dehydration (RWC decreased from 100 to 0%) and supplemented with a quenching analysis revealed a polyphasic species-specific response of variable fluorescence. The changes in ChlF at a steady state (Fs), potential and effective quantum yields of photosystem II (FV/FM, ΦPSII), and nonphotochemical quenching (NPQ) reflected a desiccation-induced inhibition of the photosynthetic processes. The dehydration-dependent fall in FV/FM and ΦPSII was species-specific, starting at an RWC range of 22-32%. The critical RWC for ΦPSII was below 5%. The changes indicated the involvement of protective mechanisms in the chloroplastic apparatus of lichen photobionts at RWCs of below 20%. In both the wet and dry states, the spectral reflectance curves (SRC) (wavelength 400-800 nm) and indices (NDVI, PRI) of the studied lichen species were measured. Black Himantormia lugubris showed no difference in the SRCs between wet and dry state. Other lichens showed a higher reflectance in the dry state compared to the wet state. The lichen morphology and anatomy data, together with the ChlF and spectral reflectance data, are discussed in relation to its potential for ecophysiological studies in Antarctic lichens.
Collapse
Affiliation(s)
- Miloš Barták
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Building A13/119, 625 00 Brno, Czech Republic; (M.B.); (J.H.); (A.O.)
| | - Josef Hájek
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Building A13/119, 625 00 Brno, Czech Republic; (M.B.); (J.H.); (A.O.)
| | - Alla Orekhova
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Building A13/119, 625 00 Brno, Czech Republic; (M.B.); (J.H.); (A.O.)
| | - Johana Villagra
- Laboratory of Plant Ecophysiology, Faculty of Natural Resources, Campus Luis Rivas del Canto, Catholic University of Temuco, Rudecindo Ortega #03694, 4780000 Temuco, Chile;
| | - Catalina Marín
- Laboratory of Mycology and Mycorrhiza, Faculty of Natural Sciences and Oceanography, Campus Concepción, Concepción University, 4030000 Concepción, Chile; (C.M.); (G.P.)
| | - Götz Palfner
- Laboratory of Mycology and Mycorrhiza, Faculty of Natural Sciences and Oceanography, Campus Concepción, Concepción University, 4030000 Concepción, Chile; (C.M.); (G.P.)
| | - Angélica Casanova-Katny
- Laboratory of Plant Ecophysiology, Faculty of Natural Resources, Campus Luis Rivas del Canto, Catholic University of Temuco, Rudecindo Ortega #03694, 4780000 Temuco, Chile;
- Correspondence: ; Tel.: +56-96-209-7709
| |
Collapse
|
4
|
Mishra KB, Vítek P, Mishra A, Hájek J, Barták M. Chlorophyll a fluorescence and Raman spectroscopy can monitor activation/deactivation of photosynthesis and carotenoids in Antarctic lichens. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 239:118458. [PMID: 32480272 DOI: 10.1016/j.saa.2020.118458] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 04/21/2020] [Accepted: 05/06/2020] [Indexed: 06/11/2023]
Abstract
Lichens survive harsh weather of Antarctica as well as of other hostile environments worldwide. Therefore, this investigation is important to understand the evolution of life on Earth in relation to their stress tolerance strategy. We have used chlorophyll a fluorescence (ChlF) and Raman spectroscopy, respectively, to monitor the activation/deactivation of photosynthesis and carotenoids in three diverse Antarctic lichens, Dermatocarpon polyphyllizum (DP), Umbilicaria antarctica (UA), and Leptogium puberulum (LP). These lichens, post 4 h or 24 h of hydration, showed differences in their ChlF transients and values of major ChlF parameters, e.g., in the maximum quantum efficiency of PSII photochemistry (Fv/Fm), and yields of fluorescence and heat dissipation (Φf,d), of effective quantum efficiency of PSII photochemistry (ΦPSII) and of non-photochemical quenching (Φnpq), which may be due to quantitative and/or qualitative differences in the composition of their photobionts. For understanding the kinetics of hydration-induced activation of photosynthesis, we screened ΦPSII of these lichens and reported its non-linear stimulation on a minute time scale; half of the activation time (t1/2) was fastest ~4.05 ± 0.29 min for DP, which was followed by 5.46 ± 0.18 min for UA, and 13.95 ± 1.24 min for LP. Upon drying of fully activated lichen thallus, there was a slow decay, in hours, of relative water content (RWC) as well as of Fv/Fm. Raman spectral signatures were different for lichens having algal (in DP and UA) and cyanobacteria (in LP) photobionts, and there was a significant shift in ν1(C=C) Raman band of carotenoids post 24 h hydration as compared to their value at a dry state or post 4 h of hydration; this shift was decreased, when drying, in DP and LP but not in UA. We conclude that hydration nonlinearly activated photosynthetic apparatus/reactions of these lichens in minute time range but there was a de-novo synthesis of chlorophylls as well as of carotenoids post 24 h. Their dehydration-induced deactivation, however, was comparatively slow, in hours range, and there seemed a degradation of synthesized chlorophylls and carotenoids post dryness. We conclude that in extremophilic lichens, their photosynthetic partners, in particular, possess a complex survival and photoprotective strategy to be successful in the extreme terrestrial environments in Antarctica.
Collapse
Affiliation(s)
- Kumud Bandhu Mishra
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic; Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00 Brno, Czech Republic.
| | - Petr Vítek
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00 Brno, Czech Republic
| | - Anamika Mishra
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00 Brno, Czech Republic
| | - Josef Hájek
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Miloš Barták
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| |
Collapse
|
5
|
Bednaříková M, Váczi P, Lazár D, Barták M. Photosynthetic performance of Antarctic lichen Dermatocarpon polyphyllizum when affected by desiccation and low temperatures. PHOTOSYNTHESIS RESEARCH 2020; 145:159-177. [PMID: 32720111 DOI: 10.1007/s11120-020-00773-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 06/30/2020] [Indexed: 06/11/2023]
Abstract
Lichens are symbiotic organisms that are well adapted to desiccation/rehydration cycles. Over the last decades, the physiological background of their photosynthetic response-specifically activation of the protective mechanism during desiccation-has been studied at the level of photosystem II of the lichen photobiont by means of several biophysical methods. In our study, the effects of desiccation and low temperatures on chlorophyll fluorescence and spectral reflectance parameters were investigated in Antarctic chlorolichen Dermatocarpon polyphyllizum. Lichen thalli were collected from James Ross Island, Antarctica, and following transfer to a laboratory, samples were fully hydrated and exposed to desiccation at temperatures of 18, 10, and 4 °C. During the desiccation process, the relative water content (RWC) was measured gravimetrically and photosynthetic parameters related to the fast transient of chlorophyll fluorescence (OJIP) were measured repeatedly. Similarly, the change in spectral reflectance parameters (e.g., NDVI, PRI, G, NPCI) was monitored during thallus dehydration. The dehydration-response curves showed a decrease in a majority of the OJIP-derived parameters (e.g., maximum quantum yield of photosystem II photochemistry: FV/FM, and performance index: PI in D. polyphyllizum, which were more apparent at RWCs below 20%. The activation of protective mechanisms in severely dehydrated thalli was documented by increased thermal dissipation (DI0/RC) and its quantum yield (Phi_D0). Low temperature accelerated these processes. An analysis of the OJIP shape reveals the presence of K-bands (300 μs), and L-bands (80 μs), which can be attributed to dehydration-induced stress. Spectral reflectance indices decreased in a majority of cases with an RWC decrease and were positively related to the OJIP-derived parameters: FV/FM (capacity of photosynthetic processes in PSII), Phi_E0 (effectiveness of electron transport), and PI_tot (total performance index), which was more apparent in NDVI. A negative relation was found for NPCI. These indices could be used in follow-up ecophysiological photosynthetic studies of lichens that are undergoing rehydration/dehydration cycles.
Collapse
Affiliation(s)
- Michaela Bednaříková
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kotlářská 2, 61137, Brno, Czech Republic.
| | - Peter Váczi
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kotlářská 2, 61137, Brno, Czech Republic
| | - Dušan Lazár
- Department of Biophysics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 793 71, Olomouc, Czech Republic
| | - Miloš Barták
- Department of Experimental Biology, Faculty of Science, Masaryk University, Kotlářská 2, 61137, Brno, Czech Republic
| |
Collapse
|