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Al Jedani S, Smith CI, Ingham J, Whitley CA, Ellis BG, Triantafyllou A, Gunning PJ, Gardner P, Risk JM, Shaw RJ, Weightman P, Barrett SD. Tissue discrimination in head and neck cancer using image fusion of IR and optical microscopy. Analyst 2023; 148:4189-4194. [PMID: 37529901 PMCID: PMC10440831 DOI: 10.1039/d3an00692a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 07/27/2023] [Indexed: 08/03/2023]
Abstract
A regression-based fusion algorithm has been used to merge hyperspectral Fourier transform infrared (FTIR) data with an H&E image of oral squamous cell carcinoma metastases in cervical lymphoid nodal tissue. This provides insight into the success of the ratio of FTIR absorbances at 1252 cm-1 and 1285 cm-1 in discriminating between these tissue types. The success is due to absorbances at these two wavenumbers being dominated by contributions from DNA and collagen, respectively. A pixel-by-pixel fit of the fused spectra to the FTIR spectra of collagen, DNA and cytokeratin reveals the contributions of these molecules to the tissue at high spatial resolution.
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Affiliation(s)
- Safaa Al Jedani
- Department of Physics, University of Liverpool, L69 7ZE, UK.
- Department of Physics, University of Jeddah, Saudi Arabia
| | | | - James Ingham
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Conor A Whitley
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Barnaby G Ellis
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Asterios Triantafyllou
- Department of Cellular Pathology, Liverpool Clinical Laboratories, University of Liverpool, Liverpool, L7 8YE, UK
| | - Philip J Gunning
- Liverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK
| | - Peter Gardner
- Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Janet M Risk
- Liverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK
| | - Richard J Shaw
- Liverpool Head and Neck Centre, Department of Molecular and Clinical Cancer Medicine, University of Liverpool, L7 8TX, UK
- Head and Neck Surgery, Liverpool University Foundation NHS Trust, Aintree Hospital, Liverpool, L9 7AL, UK
| | - Peter Weightman
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Steve D Barrett
- Department of Physics, University of Liverpool, L69 7ZE, UK.
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2
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Synytsya A, Janstová D, Šmidová M, Synytsya A, Petrtýl J. Evaluation of IR and Raman spectroscopic markers of human collagens: Insides for indicating colorectal carcinogenesis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 296:122664. [PMID: 36996519 DOI: 10.1016/j.saa.2023.122664] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 02/26/2023] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
Abstract
Vibrational spectroscopic methods are widely used in the molecular diagnostics of carcinogenesis. Collagen, a component of connective tissue, plays a special role as a biochemical marker of pathological changes in tissues. The vibrational bands of collagens are very promising to distinguish between normal colon tissue, benign and malignant colon polyps. Differences in these bands indicate changes in the amount, structure, conformation and the ratio between the individual structural forms (subtypes) of this protein. The screening of specific collagen markers of colorectal carcinogenesis was carried out based on the FTIR and Raman (λex 785 nm) spectra of colon tissue samples and purified human collagens. It was found that individual types of human collagens showed significant differences in their vibrational spectra, and specific spectral markers were found for them. These collagen bands were assigned to specific vibrations in the polypeptide backbone, amino acid side chains and carbohydrate moieties. The corresponding spectral regions for colon tissues and colon polyps were investigated for the contribution of collagen vibrations. Mentioned spectral differences in collagen spectroscopic markers could be of interest for early ex vivo diagnosis of colorectal carcinoma if combine vibrational spectroscopy and colonoscopy.
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Affiliation(s)
- Alla Synytsya
- Department of Analytical Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Prague 6, Czech Republic.
| | - Daniela Janstová
- Department of Analytical Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Miroslava Šmidová
- Department of Analytical Chemistry, University of Chemistry and Technology Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Andriy Synytsya
- Department of Carbohydrates and Cereals, University of Chemistry and Technology Prague, Technická 5, 166 28 Prague 6, Czech Republic
| | - Jaromír Petrtýl
- 4th Internal Clinic-Gastroenterology and Hepatology, 1(st) Faculty of Medicine, Charles University in Prague and General University Hospital in Prague, U Nemocnice 2, 128 00 Prague 2, Czech Republic
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3
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Fan HR, Zhang EM, Fei Y, Huang B, Yao M. Early Diagnosis of Herpes Zoster Neuralgia: A Narrative Review. Pain Ther 2023; 12:893-901. [PMID: 37129752 PMCID: PMC10289968 DOI: 10.1007/s40122-023-00510-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 03/30/2023] [Indexed: 05/03/2023] Open
Abstract
BACKGROUND Early intervention reduces the incidence of postherpetic neuralgia (PHN). Typical shingles are easy to diagnose; however, there is no clear diagnostic method for neuralgia symptoms manifested before the onset of the rash, which can easily cause misdiagnosis. This not only increases the patient's pain, medical expenses, and mental burden, but more importantly, delays the valuable time for early treatment of shingles, and increases the probability of complications and PHN. OBJECTIVE In this paper, the diagnostic methods of preherpetic neuralgia were summarized and analyzed, and the current challenges were put forward to provide directions for the early diagnosis of herpes zoster (HZ) in the future. METHODS PubMed, and China National Knowledge Infrastructure (CNKI) libraries were searched using the terms "herpes zoster," "before the blistering," "diagnosis," and "neuralgia." Clinical trials, reviews, and case reports were collected and reviewed. The period of literature search is from 1 January 1980 to 1 October 2022. RESULTS The early diagnosis of herpes zoster neuralgia can reduce misdiagnosis and mistreatment, and timely and effective intervention can significantly reduce the incidence of PHN. The body may possess a mechanism that limits the local breakthrough of the virus in the skin, causing blistering later than the onset of pain. Changes in the plasma proteins of patients with varicella-zoster virus shingles neuralgia may be used as an early diagnostic indicator in patients with HZ neuralgia before eruption. CONCLUSION Early diagnosis of HZ neuralgia before eruption can facilitate timely targeted treatment, thereby reducing the incidence of PHN. Proteomic quantitative analysis and validation results can serve as a simple, micro, rapid, and accurate diagnostic method.
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Affiliation(s)
- Han-Rui Fan
- Zhejiang Chinese Medicine University, Hangzhou, People's Republic of China
| | - En-Ming Zhang
- Zhejiang Chinese Medicine University, Hangzhou, People's Republic of China
| | - Yong Fei
- Department of Anesthesiology and Pain, The Affiliated Hospital of Jiaxing University, 1882 Zhong-Huan-South Road, Jiaxing, 314000, People's Republic of China.
| | - Bing Huang
- Department of Anesthesiology and Pain, The Affiliated Hospital of Jiaxing University, 1882 Zhong-Huan-South Road, Jiaxing, 314000, People's Republic of China
| | - Ming Yao
- Department of Anesthesiology and Pain, The Affiliated Hospital of Jiaxing University, 1882 Zhong-Huan-South Road, Jiaxing, 314000, People's Republic of China
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Bhargava R. Digital Histopathology by Infrared Spectroscopic Imaging. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2023; 16:205-230. [PMID: 37068745 PMCID: PMC10408309 DOI: 10.1146/annurev-anchem-101422-090956] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Infrared (IR) spectroscopic imaging records spatially resolved molecular vibrational spectra, enabling a comprehensive measurement of the chemical makeup and heterogeneity of biological tissues. Combining this novel contrast mechanism in microscopy with the use of artificial intelligence can transform the practice of histopathology, which currently relies largely on human examination of morphologic patterns within stained tissue. First, this review summarizes IR imaging instrumentation especially suited to histopathology, analyses of its performance, and major trends. Second, an overview of data processing methods and application of machine learning is given, with an emphasis on the emerging use of deep learning. Third, a discussion on workflows in pathology is provided, with four categories proposed based on the complexity of methods and the analytical performance needed. Last, a set of guidelines, termed experimental and analytical specifications for spectroscopic imaging in histopathology, are proposed to help standardize the diversity of approaches in this emerging area.
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Affiliation(s)
- Rohit Bhargava
- Department of Bioengineering; Department of Electrical and Computer Engineering; Department of Mechanical Science and Engineering; Department of Chemical and Biomolecular Engineering; Department of Chemistry; Cancer Center at Illinois; and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
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5
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Gieroba B, Kalisz G, Krysa M, Khalavka M, Przekora A. Application of Vibrational Spectroscopic Techniques in the Study of the Natural Polysaccharides and Their Cross-Linking Process. Int J Mol Sci 2023; 24:ijms24032630. [PMID: 36768949 PMCID: PMC9916414 DOI: 10.3390/ijms24032630] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/24/2023] [Accepted: 01/27/2023] [Indexed: 02/03/2023] Open
Abstract
Polysaccharides are one of the most abundant natural polymers and their molecular structure influences many crucial characteristics-inter alia hydrophobicity, mechanical, and physicochemical properties. Vibrational spectroscopic techniques, such as infrared (IR) and Raman spectroscopies are excellent tools to study their arrangement during polymerization and cross-linking processes. This review paper summarizes the application of the above-mentioned analytical methods to track the structure of natural polysaccharides, such as cellulose, hemicellulose, glucan, starch, chitosan, dextran, and their derivatives, which affects their industrial and medical use.
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Affiliation(s)
- Barbara Gieroba
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
- Correspondence:
| | - Grzegorz Kalisz
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
| | - Mikolaj Krysa
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
| | - Maryna Khalavka
- Independent Unit of Spectroscopy and Chemical Imaging, Medical University of Lublin, Chodźki 4a Street, 20-093 Lublin, Poland
- Department of Industrial Technology of Drugs, National University of Pharmacy, Pushkins’ka 63 Street, 61002 Kharkiv, Ukraine
| | - Agata Przekora
- Independent Unit of Tissue Engineering and Regenerative Medicine, Medical University of Lublin, Chodźki 1 Street, 20-093 Lublin, Poland
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Cameron JM, Rinaldi C, Rutherford SH, Sala A, G Theakstone A, Baker MJ. Clinical Spectroscopy: Lost in Translation? APPLIED SPECTROSCOPY 2022; 76:393-415. [PMID: 34041957 DOI: 10.1177/00037028211021846] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
This Focal Point Review paper discusses the developments of biomedical Raman and infrared spectroscopy, and the recent strive towards these technologies being regarded as reliable clinical tools. The promise of vibrational spectroscopy in the field of biomedical science, alongside the development of computational methods for spectral analysis, has driven a plethora of proof-of-concept studies which convey the potential of various spectroscopic approaches. Here we report a brief review of the literature published over the past few decades, with a focus on the current technical, clinical, and economic barriers to translation, namely the limitations of many of the early studies, and the lack of understanding of clinical pathways, health technology assessments, regulatory approval, clinical feasibility, and funding applications. The field of biomedical vibrational spectroscopy must acknowledge and overcome these hurdles in order to achieve clinical efficacy. Current prospects have been overviewed with comment on the advised future direction of spectroscopic technologies, with the aspiration that many of these innovative approaches can ultimately reach the frontier of medical diagnostics and many clinical applications.
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Affiliation(s)
| | - Christopher Rinaldi
- WestCHEM, Department of Pure and Applied Chemistry, Technology and Innovation Centre, Glasgow, UK
| | - Samantha H Rutherford
- WestCHEM, Department of Pure and Applied Chemistry, Technology and Innovation Centre, Glasgow, UK
| | - Alexandra Sala
- WestCHEM, Department of Pure and Applied Chemistry, Technology and Innovation Centre, Glasgow, UK
| | - Ashton G Theakstone
- WestCHEM, Department of Pure and Applied Chemistry, Technology and Innovation Centre, Glasgow, UK
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Possenti E, Colombo C, Realini M, Song CL, Kazarian SG. Time-Resolved ATR-FTIR Spectroscopy and Macro ATR-FTIR Spectroscopic Imaging of Inorganic Treatments for Stone Conservation. Anal Chem 2021; 93:14635-14642. [PMID: 34699174 PMCID: PMC9295121 DOI: 10.1021/acs.analchem.1c02392] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
In
this study, the novel application of ATR–FTIR spectroscopy
and macro ATR–FTIR spectroscopic imaging overcame an analytical
challenge in conservation science: the time-resolved, chemical, and
spatial investigation of the reaction of inorganic treatments for
stone conservation (ammonium oxalate, AmOx; ammonium phosphate, DAP)
occurring in water-based solutions. The aim was to (1) assess the
composition and localization of reaction products and their phase
variation during the reaction in real time and directly in an aqueous
environment and (2) investigate the reaction of AmOx and DAP with
calcite and the transformations induced to the substrate with a time-resolved
approach. The new analytical results showed that for both treatments,
the formation of new crystalline phases initiated at the early stages
of the reaction. Their composition changed during the treatment and
led to more stable phases. The reactivity of the stone substrate to
the treatments varied as a function of the stone material features,
such as the specific surface area. A clear influence of post-treatment
rinsing on the final composition of reaction phases was observed.
Above all, our research demonstrates the actual feasibility, practicality,
and high potential of an advanced ATR–FTIR spectroscopic approach
to investigate the behavior of conservation treatments and provided
new analytical tools to address the choices of conservation in pilot
worksites. Lastly, this study opens novel analytical perspectives
based on the new possible applications of ATR–FTIR spectroscopic
imaging in the field of conservation science, materials science, and
analytical chemistry.
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Affiliation(s)
- Elena Possenti
- Istituto di Scienze del Patrimonio Culturale, Consiglio Nazionale delle Ricerche, ISPC-CNR, Via R. Cozzi 53, Milano 20125, Italy
| | - Chiara Colombo
- Istituto di Scienze del Patrimonio Culturale, Consiglio Nazionale delle Ricerche, ISPC-CNR, Via R. Cozzi 53, Milano 20125, Italy
| | - Marco Realini
- Istituto di Scienze del Patrimonio Culturale, Consiglio Nazionale delle Ricerche, ISPC-CNR, Via R. Cozzi 53, Milano 20125, Italy
| | - Cai Li Song
- Department of Chemical Engineering, Imperial College London, South Kensington Campus London, London SW7 2AZ, United Kingdom
| | - Sergei G Kazarian
- Department of Chemical Engineering, Imperial College London, South Kensington Campus London, London SW7 2AZ, United Kingdom
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8
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Paukshtis EA, Kovalyov EV, Glazneva TS, Kazarian SG. New DRIFT spectroscopic methodology for acquiring infrared spectra of fiberglass materials. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 260:119995. [PMID: 34058668 DOI: 10.1016/j.saa.2021.119995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/13/2021] [Accepted: 05/20/2021] [Indexed: 06/12/2023]
Abstract
We report a new approach for infrared spectroscopic analysis of fiberglass materials using a mirror substrate, which allowed the specular reflection from the sample surface to be minimized and detect the light passing through the sample. The application of this technique for platinum-containing fiberglass catalysts made it possible for the first time to identify sulfate compounds formed in glass fibers during the oxidation reaction of sulfur dioxide. The developed technique can be applied for a number of research samples that are difficult to analyze by conventional IR spectroscopic methods.
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Affiliation(s)
- Evgeniy A Paukshtis
- Boreskov Institute of Catalysis, Pr. Ak. Lavrentieva 5, Novosibirsk 630090, Russia
| | - Evgenii V Kovalyov
- Boreskov Institute of Catalysis, Pr. Ak. Lavrentieva 5, Novosibirsk 630090, Russia
| | - Tatiana S Glazneva
- Boreskov Institute of Catalysis, Pr. Ak. Lavrentieva 5, Novosibirsk 630090, Russia.
| | - Sergei G Kazarian
- Imperial College London, Department of Chemical Engineering, South Kensington Campus, London SW7 2AZ, United Kingdom
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9
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Al Jedani S, Whitley CA, Ellis BG, Triantafyllou A, Smith CI, Gunning PJ, Gardner P, Risk JM, Weightman P, Barrett SD. Image fusion of IR and optical microscopy for mapping of biomolecules in tissue. Analyst 2021; 146:5848-5854. [PMID: 34498612 PMCID: PMC8475953 DOI: 10.1039/d1an01161h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 08/30/2021] [Indexed: 11/21/2022]
Abstract
It is shown that a pixel-level image fusion technique can produce images that combine the spatial resolution of optical microscopy images of haematoxylin and eosin (H&E) stained tissue with the chemical information in Fourier transform infrared (FTIR) images. The fused images show minimal distortion and the higher spatial resolution of the H&E images overcomes the diffraction limit on the spatial resolution of the FTIR images. A consideration of the FTIR spectra of nucleic acids and collagen can explain the changes in contrast between non-cancerous oral epithelium and underlying stroma within fused images formed by combining an H&E stain of oral tissue with FTIR images of the tissue obtained at a number of wavenumbers.
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Affiliation(s)
- Safaa Al Jedani
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Conor A Whitley
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Barnaby G Ellis
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Asterios Triantafyllou
- Department of Pathology, Liverpool Clinical Laboratories, University of Liverpool, Liverpool, L69 3GA, UK
| | | | - Philip J Gunning
- Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, L3 9TA, UK
| | - Peter Gardner
- Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Janet M Risk
- Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, L3 9TA, UK
| | - Peter Weightman
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Steve D Barrett
- Department of Physics, University of Liverpool, L69 7ZE, UK.
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10
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Chan KA, Shalygin AS, Martyanov ON, Welton T, Kazarian SG. High throughput study of ionic liquids in controlled environments with FTIR spectroscopic imaging. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116412] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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11
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Phal Y, Yeh K, Bhargava R. Design Considerations for Discrete Frequency Infrared Microscopy Systems. APPLIED SPECTROSCOPY 2021; 75:1067-1092. [PMID: 33876990 PMCID: PMC9993325 DOI: 10.1177/00037028211013372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Discrete frequency infrared chemical imaging is transforming the practice of microspectroscopy by enabling a diversity of instrumentation and new measurement capabilities. While a variety of hardware implementations have been realized, design considerations that are unique to infrared (IR) microscopes have not yet been compiled in literature. Here, we describe the evolution of IR microscopes, provide rationales for design choices, and catalog some major considerations for each of the optical components in an imaging system. We analyze design choices that use these components to optimize performance, under their particular constraints, while providing illustrative examples. We then summarize a framework to assess the factors that determine an instrument's performance mathematically. Finally, we provide a validation approach by enumerating performance metrics that can be used to evaluate the capabilities of imaging systems or suitability for specific intended applications. Together, the presented concepts and examples should aid in understanding available instrument configurations, while guiding innovations in design of the next generation of IR chemical imaging spectrometers.
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Affiliation(s)
- Yamuna Phal
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, USA
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
| | - Kevin Yeh
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
| | - Rohit Bhargava
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, USA
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
- Departments of Bioengineering, Mechanical Science and Engineering, Chemical and Biomolecular Engineering, and Chemistry, University of Illinois at Urbana-Champaign, Urbana, USA
- Cancer Center at Illinois, University of Illinois at Urbana-Champaign, Urbana, USA
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12
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Ellis BG, Whitley CA, Al Jedani S, Smith CI, Gunning PJ, Harrison P, Unsworth P, Gardner P, Shaw RJ, Barrett SD, Triantafyllou A, Risk JM, Weightman P. Insight into metastatic oral cancer tissue from novel analyses using FTIR spectroscopy and aperture IR-SNOM. Analyst 2021; 146:4895-4904. [PMID: 34241603 PMCID: PMC8311263 DOI: 10.1039/d1an00922b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A novel machine learning algorithm is shown to accurately discriminate between oral squamous cell carcinoma (OSCC) nodal metastases and surrounding lymphoid tissue on the basis of a single metric, the ratio of Fourier transform infrared (FTIR) absorption intensities at 1252 cm−1 and 1285 cm−1. The metric yields discriminating sensitivities, specificities and precision of 98.8 ± 0.1%, 99.89 ± 0.01% and 99.78 ± 0.02% respectively, and an area under receiver operator characteristic (AUC) of 0.9935 ± 0.0006. The delineation of the OSCC and lymphoid tissue revealed by the image formed from the metric is in better agreement with an immunohistochemistry (IHC) stained image than are either of the FTIR images obtained at the individual wavenumbers. Scanning near-field optical microscopy (SNOM) images of the tissue obtained at a number of key wavenumbers, with high spatial resolution, show variations in the chemical structure of the tissue with a feature size down to ∼4 μm. The image formed from the ratio of the SNOM images obtained at 1252 cm−1 and 1285 cm−1 shows more contrast than the SNOM images obtained at these or a number of other individual wavenumbers. The discrimination between the two tissue types is dominated by the contribution from the 1252 cm−1 signal, which is representative of nucleic acids, and this shows the OSCC tissue to be accompanied by two wide arcs of tissue which are particularly low in nucleic acids. Haematoxylin and eosin (H&E) staining shows the tumour core in this specimen to be ∼40 μm wide and the SNOM topography shows that the core centre is raised by ∼1 μm compared to the surrounding tissue. Line profiles of the SNOM signal intensity taken through the highly keratinised core show that the increase in height correlates with an increase in the protein signal. SNOM line profiles show that the nucleic acids signal decreases at the centre of the tumour core between two peaks of higher intensity. All these nucleic acid features are ∼25 μm wide, roughly the width of two cancer cells. A SNOM image (a) provides chemical insight into a metastatic tumour identified by H&E staining (b).![]()
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Affiliation(s)
- Barnaby G Ellis
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Conor A Whitley
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Safaa Al Jedani
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | | | - Philip J Gunning
- Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, L3 9TA, UK
| | - Paul Harrison
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Paul Unsworth
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Peter Gardner
- Manchester Institute of Biotechnology, 131 Princess Street, University of Manchester, Manchester, M1 7DN, UK
| | - Richard J Shaw
- Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, L3 9TA, UK and Regional Maxillofacial Unit, Aintree University Hospital, Liverpool, L9 7AL, UK
| | - Steve D Barrett
- Department of Physics, University of Liverpool, L69 7ZE, UK.
| | - Asterios Triantafyllou
- Department of Pathology, Liverpool Clinical Laboratories, University of Liverpool, Liverpool, L69 3GA, UK
| | - Janet M Risk
- Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, L3 9TA, UK
| | - Peter Weightman
- Department of Physics, University of Liverpool, L69 7ZE, UK.
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