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Phenol/Chloroform-Free TiO2-Based miRNA Extraction from Cell Lysate. Int J Mol Sci 2022; 23:ijms23168848. [PMID: 36012112 PMCID: PMC9407779 DOI: 10.3390/ijms23168848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 08/04/2022] [Accepted: 08/05/2022] [Indexed: 11/17/2022] Open
Abstract
While microRNAs are considered as excellent biomarkers of various diseases, there are still several remaining challenges regarding their isolation. In this study, we aimed to design a novel RNA isolation method that would help to overcome those challenges. Therefore, we present a novel phenol/chloroform-free, low-cost method for miRNA extraction. Within this method, RNA is extracted from cell lysate with an isopropanol/water/NaCl system, followed by solid-phase extraction using TiO2 microspheres to effectively separate short RNAs from long RNA molecules. We also demonstrated the pH-dependent selectivity of TiO2 microspheres towards different sizes of RNA. We were able to regulate the size range of extracted RNAs with simple adjustments in binding conditions used during the solid-phase extraction.
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Thawornpan P, Thanapongpichat S, Tun AW, Jumpathong W, Jong LD, Buncherd H. Isolation of Nucleic Acids Using Fly Ash as a Low-Cost Adsorbent. ANAL LETT 2020. [DOI: 10.1080/00032719.2020.1835938] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Pongsakorn Thawornpan
- Department of Molecular Biotechnology and Bioinformatics, Faculty of Science, Prince of Songkla University, Songkhla, Thailand
| | | | - Aung Win Tun
- Faculty of Graduate Studies, Mahidol University, Salaya, Thailand
| | - Watthanachai Jumpathong
- Program on Chemical Biology, Chulabhorn Graduate Institute, Center of Excellence on Environmental Health and Toxicology (EHT), Ministry of Education, Bangkok, Thailand
| | - Luitzen de Jong
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
| | - Hansuk Buncherd
- Faculty of Medical Technology, Prince of Songkla University, Songkhla, Thailand
- Medical Science Research and Innovation Institute, Prince of Songkla University, Songkhla, Thailand
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3
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A glassy carbon electrode modified with TiO2(200)-rGO hybrid nanosheets for aptamer based impedimetric determination of the prostate specific antigen. Mikrochim Acta 2018; 186:33. [DOI: 10.1007/s00604-018-3141-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 12/01/2018] [Indexed: 12/16/2022]
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4
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Liu X, Li Y, Zhou X, Luo K, Hu L, Liu K, Bai L. Photocatalytic degradation of dimethoate in Bok choy using cerium-doped nano titanium dioxide. PLoS One 2018; 13:e0197560. [PMID: 29771967 PMCID: PMC5957421 DOI: 10.1371/journal.pone.0197560] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 05/04/2018] [Indexed: 11/25/2022] Open
Abstract
Dimethoate, a systemic insecticide, has been used extensively in vegetable production. Insecticide residues in treated vegetables, however, pose a potential risk to consumers. Photocatalytic degradation is a new alternative to managing pesticide residues. In this study, the degradation of dimethoate in Bok choy was investigated under the field conditions using cerium-doped nano titanium dioxide (TiO2/Ce) hydrosol as a photocatalyst. The results show that TiO2/Ce hydrosol can accelerate the degradation of dimethoate in Bok choy. Specifically, the application of TiO2/Ce hydrosol significantly increased the reactive oxygen species (ROS) contents in the treated Bok choy, which speeds up the degradation of dimethoate. Ultra-performance liquid chromatography coupled with mass spectrometry (UPLC-MS) analysis detected three major degradation products, including omethoate, O,O,S-trimethyl thiophosphorothioate, and 1,2-Bis (acetyl-N-methyl-) methane disulfide. Two potential photodegradation pathways have been proposed based on the intermediate products. To understand the relationship between photodegradation and the molecular structure of target insecticides, we investigated the bond length, Mulliken atomic charge and frontier electron density of dimethoate using ab initio quantum analysis. These results suggest the P = S, P-S and S-C of dimethoate are the initiation sites for the photocatalytic reaction in Bok choy, which is consistent with our empirical data.
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Affiliation(s)
- Xiangying Liu
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
- Department of Entomology, University of Kentucky, Lexington, Kentucky, United States of America
- Collaborative Innovation Center of Farmland Weeds Control, Loudi, Hunan province, PR China
| | - Yu Li
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
| | - Xuguo Zhou
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
- Department of Entomology, University of Kentucky, Lexington, Kentucky, United States of America
- * E-mail: (XZ); (LB)
| | - Kun Luo
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
| | - Lifeng Hu
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
| | - Kailin Liu
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
| | - Lianyang Bai
- College of Plant Protection, Hunan Agricultural University, Changsha, Hunan province, PR China
- Collaborative Innovation Center of Farmland Weeds Control, Loudi, Hunan province, PR China
- Biotechnology Research Center, Hunan Academy of Agricultural Sciences, Changsha, Hunan province, PR China
- * E-mail: (XZ); (LB)
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5
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Chen L, Wang L, Song D, Xu Z. Reduced graphene oxide aerogel with packaged TiO 2
nanoparticles as a promising adsorbent for the separation of DNA from human whole blood. SEPARATION SCIENCE PLUS 2018. [DOI: 10.1002/sscp.201700044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Lei Chen
- Research Center for Analytical Sciences; Northeastern University; Shenyang China
| | - Lei Wang
- Research Center for Analytical Sciences; Northeastern University; Shenyang China
| | - Dan Song
- Research Center for Analytical Sciences; Northeastern University; Shenyang China
| | - Zhangrun Xu
- Research Center for Analytical Sciences; Northeastern University; Shenyang China
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6
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Heydari-Bafrooei E, Amini M, Ardakani MH. An electrochemical aptasensor based on TiO2/MWCNT and a novel synthesized Schiff base nanocomposite for the ultrasensitive detection of thrombin. Biosens Bioelectron 2016; 85:828-836. [PMID: 27295570 DOI: 10.1016/j.bios.2016.06.012] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Revised: 06/04/2016] [Accepted: 06/06/2016] [Indexed: 12/31/2022]
Abstract
A sensitive aptasensor based on a robust nanocomposite of titanium dioxide nanoparticles, multiwalled carbon nanotubes (MWCNT), chitosan and a novel synthesized Schiff base (SB) (TiO2/MWCNT/CHIT/SB) on the surface of a glassy carbon electrode (GCE) was developed for thrombin detection. The resultant nanocomposite can provide a large surface area, excellent electrocatalytic activity, and high stability, which would improve immobilization sites for biological molecules, allow remarkable amplification of the electrochemical signal and contribute to improved sensitivity. Thrombin aptamers were simply immobilized onto the TiO2-MWCNT/CHIT-SB nanocomposite matrix through simple π - π stacking and electrostatic interactions between CHIT/SB and aptamer strands. The electrochemical impedance spectroscopy (EIS), cyclic voltammetry (CV) and differential pulse voltammetry (DPV) were used to analyze the surface characterization of unmodified GCE and TiO2-MWCNT/CHIT-SB modified GCE, and also the interaction between aptamer and thrombin. In the presence of thrombin, the aptamer on the adsorbent layer captures the target on the electrode interface, which makes a barrier for electrons and inhibits electron transfer, thereby resulting in decreased DPV and increased impedance signals of the TiO2-MWCNT/CHIT-SB modified GCE. Furthermore, the proposed aptasensor has a very low LOD of 1.0fmolL(-1) thrombin within the detection range of 0.00005-10nmolL(-1). The aptasensor also presents high specificity and reproducibility for thrombin, which is unaffected by the coexistence of other proteins. Clinical application was performed with analysis of the thrombin levels in blood and CSF samples obtained from patients with MS, Parkinson, Epilepsy and Polyneuropathy using both the aptasensor and commercial ELISA kit. The results revealed the proposed system to be a promising candidate for clinical analysis of thrombin.
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Affiliation(s)
- Esmaeil Heydari-Bafrooei
- Department of Chemistry, Faculty of Science, Vali-e-Asr University of Rafsanjan, 77188-97111, Iran.
| | - Maryam Amini
- Department of Chemistry, Faculty of Science, Vali-e-Asr University of Rafsanjan, 77188-97111, Iran
| | - Mehdi Hatefi Ardakani
- Department of Chemistry, Faculty of Science, Vali-e-Asr University of Rafsanjan, 77188-97111, Iran
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7
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Sharma A, Hayat A, Mishra RK, Catanante G, Shahid SA, Bhand S, Marty JL. Design of a fluorescence aptaswitch based on the aptamer modulated nano-surface impact on the fluorescence particles. RSC Adv 2016. [DOI: 10.1039/c6ra10942j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The concept of DNA based stabilization of nanostructures to enhance the surface reactivity has been the focus of great interest in the design of colorimetric aptaswitches.
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Affiliation(s)
- Atul Sharma
- BAE Laboratoire
- Université de Perpignan Via Domitia
- 66860 Perpignan 13 Cedex
- France
- Biosensor Lab
| | - Akhtar Hayat
- BAE Laboratoire
- Université de Perpignan Via Domitia
- 66860 Perpignan 13 Cedex
- France
- Interdisciplinary Research Centre in Biomedical Materials (IRCBM)
| | - Rupesh Kumar Mishra
- BAE Laboratoire
- Université de Perpignan Via Domitia
- 66860 Perpignan 13 Cedex
- France
- Department of Biosciences and Biotechnology
| | - Gaëlle Catanante
- BAE Laboratoire
- Université de Perpignan Via Domitia
- 66860 Perpignan 13 Cedex
- France
| | | | - Sunil Bhand
- Biosensor Lab
- Department of Chemistry
- BITS, Pilani-K. K. Birla Goa Campus
- Goa
- India
| | - Jean Louis Marty
- BAE Laboratoire
- Université de Perpignan Via Domitia
- 66860 Perpignan 13 Cedex
- France
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8
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Wang M, Zhai S, Ye Z, He L, Peng D, Feng X, Yang Y, Fang S, Zhang H, Zhang Z. An electrochemical aptasensor based on a TiO2/three-dimensional reduced graphene oxide/PPy nanocomposite for the sensitive detection of lysozyme. Dalton Trans 2015; 44:6473-9. [PMID: 25751032 DOI: 10.1039/c5dt00168d] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
A sensitive aptasensor based on a nanocomposite of hollow titanium dioxide nanoball, three-dimensional reduced graphene oxide, and polypyrrole (TiO2/3D-rGO/PPy) was developed for lysozyme detection. A lysozyme aptamer was easily immobilized onto the TiO2/3D-rGO/PPy nanocomposite matrix by assembling the aptamer onto graphene through simple π-stacking interactions and electrostatic interactions between PPy molecular chains and aptamer strands. In the presence of lysozyme, the aptamer on the adsorbent layer catches the target on the electrode interface, which generates a barrier for electrons and inhibits electron transfer, subsequently resulting in decreased electrochemically differential pulse voltammetric signals of a gold electrode modified with TiO2/3D-rGO/PPy. Using this strategy, a low limit of detection of 0.085 ng mL(-1) (5.5 pM) for detecting lysozyme was observed within the detection range of 0.1-50 ng mL(-1) (0.007-3.5 nM). The aptasensor also presents high specificity for lysozyme, which is unaffected by the coexistence of other proteins. Such an aptasensor opens a rapid, selective, and sensitive route to lysozyme detection. This finding indicates that the TiO2/3D-rGO/PPy nanocomposite could be used as an electrochemical biosensor for detecting proteins in the biomedical field.
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Affiliation(s)
- Minghua Wang
- Collaborative Innovation Center of Environmental Pollution Control and Ecological Restoration, Zhengzhou University of Light Industry, No. 166, Science Avenue, Zhengzhou 450001, P. R. China.
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9
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Titanium Dioxide Nanoparticles (TiO₂) Quenching Based Aptasensing Platform: Application to Ochratoxin A Detection. Toxins (Basel) 2015; 7:3771-84. [PMID: 26402704 PMCID: PMC4591649 DOI: 10.3390/toxins7093771] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2015] [Revised: 09/15/2015] [Accepted: 09/16/2015] [Indexed: 12/17/2022] Open
Abstract
We demonstrate for the first time, the development of titanium dioxide nanoparticles (TiO2) quenching based aptasensing platform for detection of target molecules. TiO2 quench the fluorescence of FAM-labeled aptamer (fluorescein labeled aptamer) upon the non-covalent adsorption of fluorescent labeled aptamer on TiO2 surface. When OTA interacts with the aptamer, it induced aptamer G-quadruplex complex formation, weakens the interaction between FAM-labeled aptamer and TiO2, resulting in fluorescence recovery. As a proof of concept, an assay was employed for detection of Ochratoxin A (OTA). At optimized experimental condition, the obtained limit of detection (LOD) was 1.5 nM with a good linearity in the range 1.5 nM to 1.0 µM for OTA. The obtained results showed the high selectivity of assay towards OTA without interference to structurally similar analogue Ochratoxin B (OTB). The developed aptamer assay was evaluated for detection of OTA in beer sample and recoveries were recorded in the range from 94.30%–99.20%. Analytical figures of the merits of the developed aptasensing platform confirmed its applicability to real samples analysis. However, this is a generic aptasensing platform and can be extended for detection of other toxins or target analyte.
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10
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Patil RM, Shete PB, Patil SM, Govindwar SP, Pawar SH. Superparamagnetic core/shell nanostructures for magnetic isolation and enrichment of DNA. RSC Adv 2015. [DOI: 10.1039/c5ra14114a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Fe3O4 magnetic nanoparticles (MNPs) are promising candidates for various biomedical applications due to their extraordinary properties.
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Affiliation(s)
- R. M. Patil
- Center for Interdisciplinary Research
- D. Y. Patil University
- Kolhapur-416006
- India
| | - P. B. Shete
- Center for Interdisciplinary Research
- D. Y. Patil University
- Kolhapur-416006
- India
| | - S. M. Patil
- Department of Biotechnology
- Shivaji University
- Kolhapur-416004
- India
| | - S. P. Govindwar
- Department of Biochemistry
- Shivaji University
- Kolhapur-416004
- India
| | - S. H. Pawar
- Center for Interdisciplinary Research
- D. Y. Patil University
- Kolhapur-416006
- India
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11
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Yu M, Zhang J, Li S, Meng Y, Liu J. Multi-functional DNA-based synthesis of SWNTs@(TiO2/Ag/Au) nanocomposites for enhanced light-harvesting and charge collection in DSSCs. RSC Adv 2015. [DOI: 10.1039/c4ra12299b] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Based on multi-functional DNA templates, SWNTs@(TiO2/Ag/Au) nanocomposites were synthesized to enhance the light-harvesting and charge collection efficiency of DSSCs.
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Affiliation(s)
- Mei Yu
- School of Materials Science and Engineering
- Beihang University
- Beijing 100191
- China
| | - Jindan Zhang
- School of Materials Science and Engineering
- Beihang University
- Beijing 100191
- China
| | - Songmei Li
- School of Materials Science and Engineering
- Beihang University
- Beijing 100191
- China
| | - Yanbing Meng
- School of Materials Science and Engineering
- Beihang University
- Beijing 100191
- China
| | - Jianhua Liu
- School of Materials Science and Engineering
- Beihang University
- Beijing 100191
- China
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12
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Zhang X, Wang F, Liu B, Kelly EY, Servos MR, Liu J. Adsorption of DNA oligonucleotides by titanium dioxide nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:839-845. [PMID: 24387035 DOI: 10.1021/la404633p] [Citation(s) in RCA: 72] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Titanium dioxide (TiO2) or titania shows great promise in detoxification and drug delivery. To reach its full potential, it is important to interface TiO2 with biomolecules to harness their molecular recognition function. To this end, DNA attachment is an important topic. Previous work has mainly focused on long double-stranded DNA or single nucleotides. For biosensor development and targeted drug delivery, it is more important to use single-stranded oligonucleotides. Herein, the interaction between fluorescently labeled oligonucleotides and TiO2 nanoparticles is reported. The point of zero charge (PZC) of TiO2 is around 6 in water or acetate buffer; therefore, the particles are positively charged at lower pH. However, if in phosphate or citrate buffer, the particles are negatively charged, even at pH ∼2, suggesting strong adsorption of buffer anions. DNA adsorption takes place mainly via the phosphate backbone, although the bases might also have moderate contributions. Peptide nucleic acids (PNAs) with an amide backbone cannot be adsorbed. DNA adsorption is strongly affected by inorganic anions, where phosphate and citrate can strongly inhibit DNA adsorption. DNA adsorption is promoted by adding salt or lowering pH. DNA adsorption is accompanied with fluorescence quenching, and double-stranded DNA showed reduced quenching, allowing for the detection of DNA using TiO2 nanoparticles.
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Affiliation(s)
- Xu Zhang
- Department of Chemistry and Waterloo Institute for Nanotechnology, and ‡Department of Biology, University of Waterloo , 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
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13
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Ghaemi M, Absalan G. Study on the adsorption of DNA on Fe3O4 nanoparticles and on ionic liquid-modified Fe3O4 nanoparticles. Mikrochim Acta 2013. [DOI: 10.1007/s00604-013-1040-5] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Zhang X, Liu J, Li S, Tan X, Yu M, Du J. Bioinspired synthesis of Ag@TiO2 plasmonic nanocomposites to enhance the light harvesting of dye-sensitized solar cells. RSC Adv 2013. [DOI: 10.1039/c3ra42429d] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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15
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Mei Q, Ding X, Chen Y, Hong J, Koh K, Lee J, Chen H, Yin Y. Comparative SPR study on the effect of nanomaterials on the biological activity of adsorbed proteins. Mikrochim Acta 2012. [DOI: 10.1007/s00604-012-0837-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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16
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Chan J, Ying T, Guang YF, Lin LX, Kai T, Fang ZY, Ting YX, Xing LF, Ji YY. In vitro toxicity evaluation of 25-nm anatase TiO2 nanoparticles in immortalized keratinocyte cells. Biol Trace Elem Res 2011; 144:183-96. [PMID: 21552994 DOI: 10.1007/s12011-011-9064-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/25/2011] [Accepted: 04/15/2011] [Indexed: 10/18/2022]
Abstract
Titanium dioxide (TiO(2)) nanoparticles (NPs) are massively fabricated and widely used in daily life, and thus potential risk has been posed to human health. However, the mechanism of the interaction between TiO(2) NPs and cells is still unclear. In this study, the interaction of anatase TiO(2) NPs with HaCaT cells is studied in vitro with multi-techniques. The TiO(2) NPs not only insert into cells through endocytic pathway but also penetrate into the cell. The TiO(2) NPs could produce reactive oxygen species (ROS) after dispersion spontaneously. Furthermore, the interaction between TiO(2) NPs and cellular components might also generate ROS. The ROS generation could lead to cellular toxicity if the level of ROS production overwhelms the antioxidant defense. Cytoskeletal components, particularly the microfilaments and microtubules, cause modifications upon exposure to TiO(2) NPs. With all results, the toxicological effects of TiO(2) NPs on HaCaT cell can be simplified into six events.
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Affiliation(s)
- Jin Chan
- Institute of Biophysics, The Second Military Medical University, Shanghai, 200433, People's Republic of China
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