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Li J, Huang W, Li Q. New insights into pathogenic performances during peroxydisulfate composting: sources, pathways, and influencing factors. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:58093-58108. [PMID: 39306820 DOI: 10.1007/s11356-024-35040-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 09/16/2024] [Indexed: 10/11/2024]
Abstract
Livestock manure treatment technology and composting and its products have been widely used in agricultural soil. However, little was known about the variations in the fate of pathogens and the factors affecting their pathogenic ability during this process, which posed threats to ecological safety and public health globally. This study used a metagenomic approach to profile the behaviors of pathogens during peroxydisulfate composting. Results showed that Pseudomonas aeruginosa, Klebsiella pneumoniae, Escherichia coli, Burkholderia pseudomallei, and Mycobacterium tuberculosis were the main secretors of virulence factors (VFs) in composting system; their abundance and the virulence factor-related genes they carried were better downregulated under the role of peroxydisulfate. In addition, peroxydisulfate composting ensured the lower moisture, weakening the swimming mobility behavior of pathogens through suppressing the abundance of genes associated with flagellar formation, and impaired the communication between pathogens by regulating quorum sensing (QS)- and quorum quenching (QQ)-related genes. Moreover, reduced abundance of resistomes restricted pathogens disseminating infection. In summary, this study provided useful strategies in managing pathogen pathogenic ability during composting based on pathogenic source (pathogens), pathway (VFs), influencing factors (QS/QQ, physicochemical habitats), and resistomes.
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Affiliation(s)
- Jixuan Li
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Wenyu Huang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Qunliang Li
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China.
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Ahmed T, Noman M, Qi Y, Shahid M, Hussain S, Masood HA, Xu L, Ali HM, Negm S, El-Kott AF, Yao Y, Qi X, Li B. Fertilization of Microbial Composts: A Technology for Improving Stress Resilience in Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:3550. [PMID: 37896014 PMCID: PMC10609736 DOI: 10.3390/plants12203550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 09/28/2023] [Accepted: 10/09/2023] [Indexed: 10/29/2023]
Abstract
Microbial compost plays a crucial role in improving soil health, soil fertility, and plant biomass. These biofertilizers, based on microorganisms, offer numerous benefits such as enhanced nutrient acquisition (N, P, and K), production of hydrogen cyanide (HCN), and control of pathogens through induced systematic resistance. Additionally, they promote the production of phytohormones, siderophore, vitamins, protective enzymes, and antibiotics, further contributing to soil sustainability and optimal agricultural productivity. The escalating generation of organic waste from farm operations poses significant threats to the environment and soil fertility. Simultaneously, the excessive utilization of chemical fertilizers to achieve high crop yields results in detrimental impacts on soil structure and fertility. To address these challenges, a sustainable agriculture system that ensures enhanced soil fertility and minimal ecological impact is imperative. Microbial composts, developed by incorporating characterized plant-growth-promoting bacteria or fungal strains into compost derived from agricultural waste, offer a promising solution. These biofertilizers, with selected microbial strains capable of thriving in compost, offer an eco-friendly, cost-effective, and sustainable alternative for agricultural practices. In this review article, we explore the potential of microbial composts as a viable strategy for improving plant growth and environmental safety. By harnessing the benefits of microorganisms in compost, we can pave the way for sustainable agriculture and foster a healthier relationship between soil, plants, and the environment.
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Affiliation(s)
- Temoor Ahmed
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Muhammad Noman
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Yetong Qi
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Muhammad Shahid
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad 38000, Pakistan;
| | - Sabir Hussain
- Department of Environmental Sciences, Government College University, Faisalabad 38040, Pakistan;
| | - Hafiza Ayesha Masood
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38000, Pakistan
- MEU Research Unit, Middle East University, Amman 11831, Jordan
| | - Lihui Xu
- Institute of Eco-Environmental Protection, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China;
| | - Hayssam M. Ali
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia;
| | - Sally Negm
- Department of Life Sciences, College of Science and Art Mahyel Aseer, King Khalid University, Abha 62529, Saudi Arabia;
| | - Attalla F. El-Kott
- Department of Biology, College of Science, King Khalid University, Abha 61421, Saudi Arabia
| | - Yanlai Yao
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Xingjiang Qi
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Bin Li
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
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O'Connor J, Mickan BS, Siddique KHM, Rinklebe J, Kirkham MB, Bolan NS. Physical, chemical, and microbial contaminants in food waste management for soil application: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 300:118860. [PMID: 35114306 DOI: 10.1016/j.envpol.2022.118860] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 01/11/2022] [Accepted: 01/14/2022] [Indexed: 06/14/2023]
Abstract
Currently, 1.3 billion tonnes of food are thrown away each year, most of which are incinerated or landfilled causing large environmental, social, and economic issues. Therefore, the utilisation of food waste as biofertilisers, such as composts and digestates, is a solution to reduce the problems created by incineration and landfilling whilst simultaneously amending soils. The improper disposal of food wastes and bulking materials can contribute to high levels of contaminants within the end-product. Moreover, the food waste and bulking materials, themselves, may contain trace amounts of contaminants. These contaminants tend to have long half-lives, are easily mobile within soil and plants, can accumulate within the food supply chain, and have moderate to high levels of toxicity. This review aims to examine the current and emerging contaminants of high concern that impact the quality of food-waste fertilisers. The paper presents the volume of current and emerging contaminants of plastics, other physical (particulate) contaminants, heavy metals, pesticides, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), per- and polyfluoroalkyl substances (PFAS), and pathogens within food-waste composts and digestates. Due to the large extent of organic chemical contaminants and the unknown level of toxicity and persistence, the risk assessment of organic chemical contaminants in the food-supply chain remains largely unknown. This study has presented available data from literature of various contaminants found in food waste, and composts and digestates derived from food waste, and evaluated the data with current regulations globally. Overall, to reduce contaminants in composts and digestates, more studies are required on the implementation of proper disposal separation, effective composting and digestion practices, increased screening of physical contaminants, development of compostable plastics, and increased regulatory policies on emerging, problematic contaminants. Moreover, examination of emerging contaminants in food-waste composts and digestates is needed to ensure food security and reduce future human-health risks.
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Affiliation(s)
- James O'Connor
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6001, Australia; Cooperative Research Centre for High Performance Soil (Soil CRC), The University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Bede S Mickan
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6001, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water and Waste Management, Laboratory of Soil and Groundwater Management, Pauluskirchstraße 7, 42285, Wuppertal, Germany; Department of Environment, Energy and Geoinformatics, Sejong University, 98 Gunja-Dong, Guangjin-Gu, Seoul, Republic of Korea.
| | - M B Kirkham
- Department of Agronomy, Kansas State University, Manhattan, KS, 66506, United States
| | - Nanthi S Bolan
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6001, Australia; Cooperative Research Centre for High Performance Soil (Soil CRC), The University of Newcastle, Callaghan, NSW, 2308, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia
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Microbial Activity during Composting and Plant Growth Impact: A Review. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2022. [DOI: 10.22207/jpam.16.1.53] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Replacing harmful chemical pesticides with compost extracts is steadily gaining attention, offering an effective way for plant growth enhancement and disease management. Food waste has been a major issue globally due to its negative effects on the environment and human health. The methane and other harmful organisms released from the untreated waste have been identified as causes of this issue. Soil bacteria impart a very important role in biogeochemical cycles. The interactions between plants and bacteria in the rhizosphere are some of the factors that determine the health and fertility of the soil. Free-living soil bacteria are known to promote plant growth through colonizing the plant root. PGPR (Plant Growth Promoting Rhizobacteria) inoculants in compost are being commercialized as they help in the improvement of crop growth yield and provide safeguard and resistance to crops from disease. Our focus is to understand the mechanism of this natural, wet waste recycling process and implementation of a sustainable operative adaptation with microbial association to ameliorate the waste recycling system.
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Sewage Sludge as N-Fertilizers for Crop Production Enabling the Circular Bioeconomy in Agriculture: A Challenge for the New EU Regulation 1009/2019. SUSTAINABILITY 2021. [DOI: 10.3390/su132313165] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The fertilizer framework in the European Union has recently been reviewed by EU Regulation 1009/2019 that excluded sewage sludge from the list of the possible constituents of organic fertilizers relying on their origin, not on their quality. This paper aimed to carry out a complete characterization of sewage sludge obtained from a pharmaceutical manufacturing process (PDSS) to demonstrate that sewage sludge obtained from a standardized and controlled manufacturing process can be safely recycled as organic fertilizer. The agronomic and environmental characteristics of the PDSS product were analyzed and compared to other organic fertilizers. Its fertilizing potential was also evaluated through plant growth trials. PDSS was characterized by a high concentration of total N (6.6% w/w), which was all present in organic form. PDSS also showed a low concentration of heavy metals, an absence of pathogens and low concentrations of organic contaminants. Plant growth trials showed that the PDSS was able to improve lettuce and carrot growth (+25 and +46% of dry weight compared to the unfertilized control), as well as their physiological status. Considering all the results, the exclusion of sewage sludge relying only on its origin and not on its quality appears to conflict with the principles of the circular bioeconomy.
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Feng J, Zhi Y, Zhang D, Chi CP, Chu S, Hayat K, Zhou P. Rice straw as renewable components of horticultural growing media for purple cabbage. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 747:141274. [PMID: 32791411 DOI: 10.1016/j.scitotenv.2020.141274] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 07/23/2020] [Accepted: 07/25/2020] [Indexed: 06/11/2023]
Abstract
This study was conducted to estimate the influence of composted rice straw (CRS) on the growth and nutritional composition of purple cabbage (Brassica oleracea L. var. capitate L.). In order to select the proper preparation method of CRS based media, growing media were prepared by mixing peat, perlite, vermiculite and sand with CRS in different ratios. The general proportions of CRS in substrates were 25% and 50% (v/v). A mixture of 50% peat with 50% perlite (v/v) was the control (CK). Completely randomized design was used in the experiment under greenhouse conditions. The physicochemical characteristics of all growing media were determined before transplanting. Plant growth parameters as well as the mineral elements were also measured. In general, plants grown in most CRS based media were improved in growth and element nutrition in comparison with control. 25% CRS addition was the most-suitable rate for the growth of purple cabbage. The highest leaves yield obtained from T3 (25% CRS: 25% peat: 50% vermiculite, v:v:v) increased by 105.99% compared to control. CRS can be an alternative constituent to replace the generally using peat in growing media.
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Affiliation(s)
- Jie Feng
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Yuee Zhi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Dan Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Chih Ping Chi
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Shaohua Chu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Kashif Hayat
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China
| | - Pei Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai, China; Bor S. Luh Food Safety Research Center, Shanghai Jiao Tong University, Shanghai, China.
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Hu H, Li X, Wu S, Yang C. Sustainable livestock wastewater treatment via phytoremediation: Current status and future perspectives. BIORESOURCE TECHNOLOGY 2020; 315:123809. [PMID: 32682262 DOI: 10.1016/j.biortech.2020.123809] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Revised: 07/03/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
Phytoremediation, the application of vegetation and microorganisms for recovery of nutrients and decontamination of the environment, has emerged as a low-cost, eco-friendly, and sustainable approach compared to traditional biological and physico-chemical processes. Livestock wastewater is one of the most severe pollution sources to the environment and water resources. When properly handled, livestock wastewater could be an important alternative water resource in water-scarce regions. This review discussed the characteristics and hazards of different types of livestock wastewater and available methods for the treatment. Meanwhile, the current status of investigations on phytoremediation of livestock wastewater via different hydrophyte systems such as microalgae, duckweed, water hyacinth, constructed wetlands, and other hydrophytes is reviewed, and the utilization of hydrophytes after management is also discussed. Furthermore, advantages and limitations on livestock wastewater management via phytotechnologies are emphasized. At last, future research needs are also proposed.
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Affiliation(s)
- Hao Hu
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, Hunan 410082, China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, Guangdong 525000, China
| | - Xiang Li
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, Hunan 410082, China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, Guangdong 525000, China
| | - Shaohua Wu
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, Hunan 410082, China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, Guangdong 525000, China
| | - Chunping Yang
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha, Hunan 410082, China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, Guangdong 525000, China; Hunan Provincial Environmental Protection Engineering Center for Organic Pollution Control of Urban Water and Wastewater, Changsha, Hunan 410001, China.
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Wang Y, Gong J, Li J, Xin Y, Hao Z, Chen C, Li H, Wang B, Ding M, Li W, Zhang Z, Xu P, Xu T, Ding GC, Li J. Insights into bacterial diversity in compost: Core microbiome and prevalence of potential pathogenic bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 718:137304. [PMID: 32087588 DOI: 10.1016/j.scitotenv.2020.137304] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 02/12/2020] [Accepted: 02/12/2020] [Indexed: 06/10/2023]
Abstract
Fertilizer-replacement programs by the ministry of agriculture and rural affairs are extraordinary actions for environment protection and sustainable agriculture in China. A national-level survey was performed to acquire consensuses of bio-physiochemical properties for composts. A total of 116 compost samples collected from 16 provinces in China were analyzed by high throughput sequencing of bacterial 16S rRNA gene amplicons. The germination index and bacterial alpha-diversity were lower in composts from poultry manure than others. This large-scale survey revealed that bacterial communities were distinct among different composts and slightly explained by pH, moisture and total nitrogen, but not by raw material or composting process. Nevertheless, 26 OTUs affiliated with Firmicutes (Cerasibacillus, Atopostipes and Bacillus) and Actinobacteria (Thermobifida, Actinomadura and Nocardiopsis) were present in most (>90%) composts and majority of these bacterial species were possibly associated with the biodegradation of organic materials. Surprisingly, 629 potential human or animal bacterial pathogens accounting an average of 1.21% of total 16S rRNA gene were detected and these bacteria were mainly affiliated with Helicobacter, Staphylococcus, Acinotobacter, Streptococcus, Mycobacterium and Enterococcus. In summary, this study provides baseline data for the diversity and abundance of core microbiome and potential pathogens in composts.
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Affiliation(s)
- Yue Wang
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Jingyang Gong
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Jiaxin Li
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Yuanyuan Xin
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Ziyi Hao
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Chen Chen
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Huixiu Li
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Bo Wang
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Min Ding
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Wanwan Li
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Zeyu Zhang
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Pengxiang Xu
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China
| | - Ting Xu
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China; Organic Recycling Institute (Suzhou) of China Agricultural University and Suzhou ViHong Biotechnology, Wuzhong District, 215128, Jiangsu Province, China
| | - Guo-Chun Ding
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China; Organic Recycling Institute (Suzhou) of China Agricultural University and Suzhou ViHong Biotechnology, Wuzhong District, 215128, Jiangsu Province, China.
| | - Ji Li
- College of Resources and Environmental Sciences, Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Yuanmingyuan West Road No.2, Haidian District, 100193 Beijing, China; Organic Recycling Institute (Suzhou) of China Agricultural University and Suzhou ViHong Biotechnology, Wuzhong District, 215128, Jiangsu Province, China.
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You M, Fang S, MacDonald J, Xu J, Yuan ZC. Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth. Microbiol Res 2019; 233:126395. [PMID: 31865096 DOI: 10.1016/j.micres.2019.126395] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Revised: 11/06/2019] [Accepted: 12/13/2019] [Indexed: 12/20/2022]
Abstract
Plant-growth promoting rhizobacteria benefit crop health and growth through various mechanisms including phosphate and potassium solubilisation, and antimicrobial activity. Previously, we sequenced the genome of bacterial strain Burkholderia cenocepacia CR318, which was isolated from the roots of the starch corn (Zea mays L.) in London, Ontario, Canada. In this work, the species identity of this isolate is confirmed by recA phylogeny and in silico DNA-DNA hybridization (isDDH), and its plant-growth promoting characteristics are described. B. cenocepacia CR318 exhibited strong activity of inorganic phosphate and potassium solubilization. It significantly promoted the growth of corn plants and roots by solubilizing inorganic tricalcium phosphate under greenhouse conditions. Functional analysis of the complete B. cenocepacia CR318 genome revealed genes associated with phosphate metabolism such as pstSCAB encoding a high affinity inorganic phosphate-specific transporter, and the pqqABCDE gene cluster involved in the biosynthesis of pyrroloquinoline quinone (PQQ), which is a required cofactor for quinoprotein glucose dehydrogenase (Gdh). However, it appears that B. cenocepacia CR318 lacks the quinoprotein Gdh which can produce gluconic acid to solubilize inorganic phosphate. Overall, these findings provide an important step in understanding the molecular mechanisms underlying the plant growth promotion trait of B. cenocepacia CR318.
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Affiliation(s)
- Man You
- London Research and Development Centre, Agriculture & Agri-Food Canada, 1391 Sandford Street, London, ON, N5V 4T3, Canada; Department of Biology, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada
| | - Shumei Fang
- Life Science and Technology College, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, 163319, China
| | - Jacqueline MacDonald
- Department of Microbiology and Immunology, University of Western Ontario, Canada
| | - Jianping Xu
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada
| | - Ze-Chun Yuan
- London Research and Development Centre, Agriculture & Agri-Food Canada, 1391 Sandford Street, London, ON, N5V 4T3, Canada; Department of Microbiology and Immunology, University of Western Ontario, Canada.
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10
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Le Maréchal C, Druilhe C, Repérant E, Boscher E, Rouxel S, Le Roux S, Poëzévara T, Ziebal C, Houdayer C, Nagard B, Barbut F, Pourcher AM, Denis M. Evaluation of the occurrence of sporulating and nonsporulating pathogenic bacteria in manure and in digestate of five agricultural biogas plants. Microbiologyopen 2019; 8:e872. [PMID: 31568706 PMCID: PMC6813454 DOI: 10.1002/mbo3.872] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 04/29/2019] [Accepted: 04/30/2019] [Indexed: 11/11/2022] Open
Abstract
The number of agricultural biogas plants has been increasing in the past decades in some European countries. Digestates obtained after anaerobic digestion (AD) of manure are usually spread on agricultural land; however, their hygiene status regarding pathogens posing public health and/or animal health challenges has been poorly characterized up to now in France. In this study, three replicates of manure and digestate were collected from five farm biogas plants receiving animal manure in order to assess the occurrence and concentrations of sporulating (Clostridium botulinum, Clostridioides difficile, Clostridium perfringens) and nonsporulating (Listeria monocytogenes, thermotolerant Campylobacter spp., Salmonella, Escherichia coli, enterococci) bacteria. Concentrations of E. coli, enterococci, and C. perfringens in digestates ranged from 102 to 104, 104 to 105, and <103 to 7 × 105 CFU/g, respectively. Salmonella and C. difficile were detected in manure and digestate from the five biogas plants at concentrations ranging from <1.3 to >7 × 102 MPN/g and from 1.3 to 3 × 102 MPN/g, respectively. Thermotolerant Campylobacter, detected in all the manures, was only found in two digestates at a concentration of cells ranging from <10 to 2.6 × 102 CFU/g. Listeria monocytogenes and C. botulinum were detected in three manures and four digestates. The bacterial counts of L. monocytogenes and C. botulinum did not exceed 3 × 102 and 14 MPN/g, respectively. C. botulinum type B was detected at very low level in both the manure and digestate of farm biogas plants with no botulism history. The levels of pathogenic bacteria in both manure and digestate suggested that some bacteria can persist throughout AD.
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Affiliation(s)
- Caroline Le Maréchal
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Céline Druilhe
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Elisabeth Repérant
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Evelyne Boscher
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Sandra Rouxel
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Sophie Le Roux
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Typhaine Poëzévara
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Christine Ziebal
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Catherine Houdayer
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Bérengère Nagard
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Frédéric Barbut
- National Reference Laboratory for Clostridioides difficile, Saint-Antoine Hospital, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Anne-Marie Pourcher
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Martine Denis
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
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11
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Feeney P, Rodríguez SF, Molina R, McGillicuddy E, Hellebust S, Quirke M, Daly S, O'Connor D, Sodeau J. A comparison of on-line and off-line bioaerosol measurements at a biowaste site. WASTE MANAGEMENT (NEW YORK, N.Y.) 2018; 76:323-338. [PMID: 29477650 DOI: 10.1016/j.wasman.2018.02.035] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 01/09/2018] [Accepted: 02/15/2018] [Indexed: 06/08/2023]
Abstract
An air measurement campaign was carried out at a green-waste composting site in the South of Ireland during Spring 2016. The aim was to quantify and identify the levels of Primary Biological Aerosol Particles (PBAP) that were present using the traditional off-line, impaction/optical microscopy method alongside an on-line, spectroscopic approach termed WIBS (Wideband Integrated Bioaerosol Sensor), which can provide number concentrations, sizes and "shapes" of airborne PBAP in real-time by use of Light Induced Fluorescence (LIF). The results from the two techniques were compared in order to validate the use of the spectroscopic method for determining the releases of the wide-range of PBAP present there as a function of site activity and meteorological conditions. The seven-day monitoring period undertaken was much longer than any real-time studies that have been previously performed and allowed due comparison between weekday (working) activities at the site and weekend (closed) releases. The time-span also allowed relationships between site activities like turning, agitation or waste delivery and the WIBS data to be determined in a quantitative manner. This information cannot be obtained with the Andersen Sampling methods generally employed at green-waste management sites. Furthermore, few specific bioaerosol types other than Aspergillus fumigatus, are identified using the traditional protocols employed for site licensing purposes. Here though the co-location of WIBS with the impaction instrument made it possible to identify the real-time release behaviour of a specific plant pathogenic spore, Ustilago maydis, present after green-waste deliveries were made by a local distillery.
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Affiliation(s)
- Patrick Feeney
- School of Chemistry and Environmental Research Institute, University College Cork, Cork, Ireland
| | | | - Rafael Molina
- Faculty of Science, University of Extremadura, Badajoz, Spain
| | - Eoin McGillicuddy
- School of Chemical and Pharmaceutical Sciences, Dublin Institute of Technology, Dublin, Ireland
| | - Stig Hellebust
- School of Chemistry and Environmental Research Institute, University College Cork, Cork, Ireland
| | - Michael Quirke
- School of Chemistry and Environmental Research Institute, University College Cork, Cork, Ireland
| | - Shane Daly
- School of Chemistry and Environmental Research Institute, University College Cork, Cork, Ireland
| | - David O'Connor
- School of Chemical and Pharmaceutical Sciences, Dublin Institute of Technology, Dublin, Ireland
| | - John Sodeau
- School of Chemistry and Environmental Research Institute, University College Cork, Cork, Ireland.
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12
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Hu Y, Cheng H, Tao S. Environmental and human health challenges of industrial livestock and poultry farming in China and their mitigation. ENVIRONMENT INTERNATIONAL 2017; 107:111-130. [PMID: 28719840 DOI: 10.1016/j.envint.2017.07.003] [Citation(s) in RCA: 180] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Revised: 07/05/2017] [Accepted: 07/10/2017] [Indexed: 06/07/2023]
Abstract
Driven by the growing demand for food products of animal origin, industrial livestock and poultry production has become increasingly popular and is on the track of becoming an important source of environmental pollution in China. Although concentrated animal feeding operations (CAFOs) have higher production efficiency and profitability with less resource consumption compared to the traditional family-based and "free range" farming, they bring significant environmental pollution concerns and pose public health risks. Gaseous pollutants and bioaerosols are emitted directly from CAFOs, which have health implications on animal producers and neighboring communities. A range of pollutants are excreted with the animal waste, including nutrients, pathogens, natural and synthetic hormones, veterinary antimicrobials, and heavy metals, which can enter local farmland soils, surface water, and groundwater, during the storage and disposal of animal waste, and pose direct and indirect human health risks. The extensive use of antimicrobials in CAFOs also contributes to the global public health concern of antimicrobial resistance (AMR). Efforts on treating the large volumes of manure generated in CAFOs should be enhanced (e.g., by biogas digesters and integrated farm systems) to minimize their impacts on the environment and human health. Furthermore, the use of veterinary drugs and feed additives in industrial livestock and poultry farming should be controlled, which will not only make the animal food products much safer to the consumers, but also render the manure more benign for treatment and disposal on farmlands. While improving the sustainability of animal farming, China also needs to promote healthy food consumption, which not only improves public health from avoiding high-meat diets, but also slows down the expansion of industrial animal farming, and thus reduces the associated environmental and public health risks.
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Affiliation(s)
- Yuanan Hu
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, China
| | - Hefa Cheng
- MOE Key Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
| | - Shu Tao
- MOE Key Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
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13
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Murphy S, Gaffney MT, Fanning S, Burgess CM. Potential for transfer of Escherichia coli O157:H7, Listeria monocytogenes and Salmonella Senftenberg from contaminated food waste derived compost and anaerobic digestate liquid to lettuce plants. Food Microbiol 2016; 59:7-13. [PMID: 27375239 DOI: 10.1016/j.fm.2016.04.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 04/17/2016] [Accepted: 04/21/2016] [Indexed: 10/21/2022]
Abstract
The diversion of food wastes from landfill to sustainable disposal methods, such as composting and anaerobic digestion, has led to an increase in the soil amendment products that are now commercially available and which are derived from both of these processes. The use of such products as soil amendments during the production of ready-to-eat (RTE) crops is increasing worldwide. The aim of this study was to investigate the potential of three well-recognised bacterial pathogens of importance to public health, namely Escherichia coli O157:H7, Salmonella Senftenberg and Listeria monocytogenes, to become internalised in lettuce plants from peat growing media amended with contaminated food waste derived compost and anaerobic digestion liquid. The results demonstrated both S. Senftenberg and E. coli O157:H7 are capable of internalisation at lower inoculation levels, compared to previous studies. The internalisation was visualised through confocal microscopy. Internalisation of L. monocytogenes did not occur, however significant levels of L. monocytogenes contamination occurred on the non-sterilised plant surface. Assessing the internalisation potential for each of these pathogens, through the compost and anaerobic digestate matrices, allows for better risk assessment of the use of these products in a horticultural setting.
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Affiliation(s)
- Suzannah Murphy
- Teagasc Food Research Centre, Ashtown, Dublin 15, Ireland; UCD-Centre for Food Safety, School of Public Health, Physiotherapy & Sports Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Michael T Gaffney
- Teagasc Food Research Centre, Ashtown, Dublin 15, Ireland; Horticulture Development Department, Teagasc Food Research Centre, Ashtown, Dublin 15, Ireland
| | - Seamus Fanning
- UCD-Centre for Food Safety, School of Public Health, Physiotherapy & Sports Science, University College Dublin, Belfield, Dublin 4, Ireland; Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Stranmillis Road, Belfast BT9 5AG, United Kingdom
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14
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Maynaud G, Pourcher AM, Ziebal C, Cuny A, Druilhe C, Steyer JP, Wéry N. Persistence and Potential Viable but Non-culturable State of Pathogenic Bacteria during Storage of Digestates from Agricultural Biogas Plants. Front Microbiol 2016; 7:1469. [PMID: 27695451 PMCID: PMC5026136 DOI: 10.3389/fmicb.2016.01469] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Accepted: 09/02/2016] [Indexed: 11/13/2022] Open
Abstract
Despite the development of on-farm anaerobic digestion as a process for making profitable use of animal by-products, factors leading to the inactivation of pathogenic bacteria during storage of digestates remain poorly described. Here, a microcosm approach was used to evaluate the persistence of three pathogenic bacteria (Salmonella enterica Derby, Campylobacter coli and Listeria monocytogenes) in digestates from farms, stored for later land spreading. Nine samples, including raw digestates, liquid fractions of digestate and composted digestates, were inoculated with each pathogen and maintained for 40 days at 24°C. Concentrations of pathogens were monitored using culture and qPCR methods. The persistence of L. monocytogenes, detected up to 20 days after inoculation, was higher than that of Salmonella Derby, detected for 7-20 days, and of C. coli (not detected after 7 days). In some digestates, the concentration of the pathogens by qPCR assay was several orders of magnitude higher than the concentration of culturable cells, suggesting a potential loss of culturability and induction of Viable but Non-Culturable (VBNC) state. The potential VBNC state which was generally not observed in the same digestate for the three pathogens, occurred more frequently for C. coli and L. monocytogenes than for Salmonella Derby. Composting a digestate reduced the persistence of seeded L. monocytogenes but promoted the maintenance of Salmonella Derby. The effect of NH[Formula: see text]/NH3 on the culturability of C. coli and Salmonella Derby was also shown. The loss of culturability may be the underlying mechanism for the regrowth of pathogens. We have also demonstrated the importance of using molecular tools to monitor pathogens in environmental samples since culture methods may underestimate cell concentration. Our results underline the importance of considering VBNC cells when evaluating the sanitary effect of an anaerobic digestion process and the persistence of pathogens during the storage of digestates and subsequent land spreading.
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Affiliation(s)
| | | | - Christine Ziebal
- UR OPAALEIrstea, Rennes, France
- Univ Bretagne LoireRennes, France
| | | | - Céline Druilhe
- UR OPAALEIrstea, Rennes, France
- Univ Bretagne LoireRennes, France
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