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Huang Z, Yu X, Liu Q, Maki T, Alam K, Wang Y, Xue F, Tang S, Du P, Dong Q, Wang D, Huang J. Bioaerosols in the atmosphere: A comprehensive review on detection methods, concentration and influencing factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168818. [PMID: 38036132 DOI: 10.1016/j.scitotenv.2023.168818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 11/17/2023] [Accepted: 11/21/2023] [Indexed: 12/02/2023]
Abstract
In the past few decades, especially since the outbreak of the coronavirus disease (COVID-19), the effects of atmospheric bioaerosols on human health, the environment, and climate have received great attention. To evaluate the impacts of bioaerosols quantitatively, it is crucial to determine the types of bioaerosols in the atmosphere and their spatial-temporal distribution. We provide a concise summary of the online and offline observation strategies employed by the global research community to sample and analyze atmospheric bioaerosols. In addition, the quantitative distribution of bioaerosols is described by considering the atmospheric bioaerosols concentrations at various time scales (daily and seasonal changes, for example), under various weather, and different underlying surfaces. Finally, a comprehensive summary of the reasons for the spatiotemporal distribution of bioaerosols is discussed, including differences in emission sources, the impact process of meteorological factors and environmental factors. This review of information on the latest research progress contributes to the emergence of further observation strategies that determine the quantitative dynamics of public health and ecological effects of bioaerosols.
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Affiliation(s)
- Zhongwei Huang
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China; Collaborative Innovation Center for Western Ecological Safety, Lanzhou University, Lanzhou 730000, China
| | - Xinrong Yu
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Qiantao Liu
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Teruya Maki
- Department of Life Science, Faculty of Science and Engineering, Kindai University, Higashiosaka, Osaka, Japan
| | - Khan Alam
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan
| | - Yongkai Wang
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Fanli Xue
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Shihan Tang
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Pengyue Du
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Qing Dong
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Danfeng Wang
- Collaborative Innovation Center for Western Ecological Safety, Lanzhou University, Lanzhou 730000, China
| | - Jianping Huang
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China; Collaborative Innovation Center for Western Ecological Safety, Lanzhou University, Lanzhou 730000, China.
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Sajjad B, Hussain S, Rasool K, Hassan M, Almomani F. Comprehensive insights into advances in ambient bioaerosols sampling, analysis and factors influencing bioaerosols composition. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 336:122473. [PMID: 37659632 DOI: 10.1016/j.envpol.2023.122473] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 08/20/2023] [Accepted: 08/27/2023] [Indexed: 09/04/2023]
Abstract
While the study of bioaerosols has a long history, it has garnered heightened interest in the past few years, focusing on both culture-dependent and independent sampling and analysis approaches. Observations have been made regarding the seasonal fluctuations in microbial communities and their connection to particular ambient atmospheric factors. The study of airborne microbial communities is important in public health and atmospheric processes. Nevertheless, the establishment of standardized protocols for evaluating airborne microbial communities and utilizing microbial taxonomy as a means to identify distinct bioaerosols sources and seasonal patterns remains relatively unexplored. This article discusses the challenges and limitations of ambient bioaerosols sampling and analysis, including the lack of standardized methods and the heterogeneity of sources. Future prospects in the field of bioaerosols, including the use of high-throughput sequencing technologies, omics studies, spectroscopy and fluorescence-based monitoring to provide comprehensive incite on metabolic capacity, and activity are also presented. Furthermore, the review highlights the factors that affect bioaerosols composition, including seasonality, atmospheric conditions, and pollution levels. Overall, this review provides a valuable resource for researchers, policymakers, and stakeholders interested in understanding and managing bioaerosols in various environments.
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Affiliation(s)
- Bilal Sajjad
- Qatar Environment and Energy Research Institute (QEERI), Hamad Bin Khalifa University, Qatar Foundation, P.O. Box 5825, Doha, Qatar; Department of Chemical Engineering, Qatar University, P. O. Box 2713, Doha, Qatar
| | - Sabir Hussain
- Department of Environmental Science, Institute of Space Technology, Islamabad, Pakistan
| | - Kashif Rasool
- Qatar Environment and Energy Research Institute (QEERI), Hamad Bin Khalifa University, Qatar Foundation, P.O. Box 5825, Doha, Qatar.
| | - Mujtaba Hassan
- Department of Environmental Science, Institute of Space Technology, Islamabad, Pakistan
| | - Fares Almomani
- Department of Chemical Engineering, Qatar University, P. O. Box 2713, Doha, Qatar
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Bao Y, Chen Y, Wang F, Xu Z, Zhou S, Sun R, Wu X, Yan K. East Asian monsoon manipulates the richness and taxonomic composition of airborne bacteria over China coastal area. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 875:162581. [PMID: 36889406 DOI: 10.1016/j.scitotenv.2023.162581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Revised: 01/23/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
Airborne bacteria may have significant impacts on aerosol properties, public health and ecosystem depending on their taxonomic composition and transport. This study investigated the seasonal and spatial variations of bacterial composition and richness over the east coast of China and the roles of East Asian monsoon played through synchronous sampling and 16S rRNA sequencing analysis of airborne bacteria at Huaniao island of the East China Sea (ECS) and the urban and rural sites of Shanghai. Airborne bacteria showed higher richness over the land sites than Huaniao island with the highest values found in the urban and rural springs associated with the growing plants. For the island, the maximal richness occurred in winter as the result of prevailing terrestrial winds controlled by East Asian winter monsoon. Proteobacteria, Actinobacteria and Cyanobacteria were found to be top three phyla, together accounting for 75 % of total airborne bacteria. Radiation-resistant Deinococcus, Methylobacterium belonging to Rhizobiales (related to vegetation) and Mastigocladopsis_PCC_10914 originating from marine ecosystem were indicator genera for urban, rural and island sites, respectively. The Bray-Curits dissimilarity of taxonomic composition between the island and two land sites was the lowest in winter with the representative genera over island also typically from the soil. Our results reveal that seasonal change of monsoon wind directions evidently affects the richness and taxonomic composition of airborne bacteria in China coastal area. Particularly, prevailing terrestrial winds lead to the dominance of land-derived bacteria over the coastal ECS which may have a potential impact on marine ecosystem.
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Affiliation(s)
- Yang Bao
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China
| | - Ying Chen
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China; Institute of Eco-Chongming (IEC), National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Shanghai 202162, China.
| | - Fanghui Wang
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China
| | - Zongjun Xu
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China
| | - Shengqian Zhou
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China
| | - Ruihua Sun
- Pudong New District Environmental Monitoring Station, Shanghai 200135, China
| | - Xiaowei Wu
- School of Environmental and Geographical Sciences, Shanghai Normal University, Shanghai 200233, China
| | - Ke Yan
- Shanghai Key Laboratory of Atmospheric Particle Pollution Prevention, Department of Environmental Science & Engineering, Institute of Atmospheric Sciences, Fudan University, Shanghai 200438, China
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Tian H, Liu J, Zhang Y, Yue P. A novel integrated industrial-scale biological reactor for odor control in a sewage sludge composting facility: Performance, pollutant transformation, and bioaerosol emission mechanism. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 164:9-19. [PMID: 37185067 DOI: 10.1016/j.wasman.2023.03.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 02/27/2023] [Accepted: 03/17/2023] [Indexed: 05/17/2023]
Abstract
In order to remove multiple pollutants in the sewage sludge (SS) composting facility, a novel integrated industrial-scale biological reactor based on biological trickling filtration and fungal biological filtration (BTF-FBF) was developed. This study examined bioaerosol emission, odour removal, pollutant transformation mechanism, and project investment. At an inlet flow rate of 7200 m3/h, the average removal efficiencies of hydrogen sulfide (H2S), ammonia (NH3), and volatile organic compounds (VOCs) during the steady stage were 97.2 %, 98.9 %, and 92.2 %. The BTF-FBF separates microbial phases (bacteria and fungi) of different modules. BTF removed most hydrophilic compounds, while FBF removed hydrophobic ones. Moreover, the reactor could effectively remove pathogens or opportunistic pathogens bioaerosols, such as Escherichia coli (61.9%), Salmonella sp. (85%), and Aspergillus fumigatus (82.1%). The pollutant transformation mechanism of BTF-FBF was proposed. BTF-FBF annualized costs were 324,783 CNY/year at 15 years. In conclusion, BTF-FBF provides new insights into composting facility bioaerosol, odour, and pathogen emission control.
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Affiliation(s)
- Hongyu Tian
- School of Chemical and Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, PR China; Beijing Engineering Research Center of Sustainable Urban Sewage System Construction and Risk Control, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China.
| | - Jianwei Liu
- Beijing Engineering Research Center of Sustainable Urban Sewage System Construction and Risk Control, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China; School of Environment and Energy Engineering, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China.
| | - Yuxiu Zhang
- School of Chemical and Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, PR China.
| | - Peng Yue
- Beijing Engineering Research Center of Sustainable Urban Sewage System Construction and Risk Control, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China; School of Environment and Energy Engineering, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China.
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Korneykova MV, Soshina AS, Gavrichkova OV. Opportunistic Mycobiota of Dust in Cities of Different Climate Zones: Murmansk and Moscow. DOKLADY BIOLOGICAL SCIENCES : PROCEEDINGS OF THE ACADEMY OF SCIENCES OF THE USSR, BIOLOGICAL SCIENCES SECTIONS 2022; 507:428-440. [PMID: 36781538 DOI: 10.1134/s0012496622060084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 09/04/2022] [Accepted: 09/08/2022] [Indexed: 02/15/2023]
Abstract
For the first time, mycological analysis of dust, including assessment of opportunistic fungal species, was carried out for the urban ecosystems of air, vegetation, and paved surfaces in different climate areas (the cities of Murmansk and Moscow). The combined effect of environmental factors (climate, functional zone, and substrate type) on qualitative and quantitative parameters of micromycete communities was assessed using MANOVA and cluster analysis. It was found that the abundance of culturable mycobiota in the air, on tree leaves, and on paved surfaces was lower in Murmansk than in Moscow. In both cities, approximately a half of fungal species were opportunistic pathogens. The relative abundance of opportunistic fungi of the BSL-2 group was higher in the air of the traffic zone in both cities and of the residential zone in Moscow. In the residential and traffic zones of Moscow, the most abundant species in the air in on the road dust were Aspergillus fumigatus and A. niger, while in Murmansk communities were dominated by members of the genera Cephalosporium, Scopulariopsis, and Trichoderma, which are less pathogenic for humans. The most significant factors affecting the abundance and species diversity of micromycetes, including opportunistic fungi, were the substrate type (air, leaves, or paved surfaces) and the climate, while the effect of the functional zone was not significant. The recreation zones of cities located in different climate regions are the most favorable for humans due to lower abundance of opportunistic fungi in the air and to lack of micromycetes of the BSL-2 and BSL-3 groups. However, the abundance of potentially pathogenic species on the surfaces of leaves and roads in this zone was higher than in the air. Therefore, it can be recommended that city residents minimize their contact with the leaves surface and road pavements, which is especially relevant for toddlers, so as to diminish the probability of encountering opportunistic mycobiota that potentially represents a health hazard.
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Affiliation(s)
- M V Korneykova
- RUDN University, Moscow, Russia. .,Institute of Problems of Industrial Ecology of the North, Kola Research Center of the Russian Academy of Sciences, Apatity, Russia.
| | - A S Soshina
- Institute of Problems of Industrial Ecology of the North, Kola Research Center of the Russian Academy of Sciences, Apatity, Russia.
| | - O V Gavrichkova
- Research Institute on Terrestrial Ecosystems, National Research Council, Porano, Italy.
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Yang L, Shen Z, Wei J, Wang X, Xu H, Sun J, Wang Q, Cao J. Size distribution, community composition, and influencing factors of bioaerosols on haze and non-haze days in a megacity in Northwest China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:155969. [PMID: 35588847 DOI: 10.1016/j.scitotenv.2022.155969] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 04/20/2022] [Accepted: 05/11/2022] [Indexed: 06/15/2023]
Abstract
Bioaerosols have become a major environmental concern in recent years. In this study, the diurnal variations and size distributions of bioaerosols, as well as airborne bacterial community compositions and their influencing factors on haze and non-haze days in Xi'an, China, were compared. The results indicated that the mean bacteria and fungi concentrations on non-haze days were 1.7 and 1.4 times of those on haze days, respectively, whereas the mean total airborne microbe (TAM) concentration was higher on haze days. Bacteria concentrations were the lowest in the afternoon, and the TAM concentration exhibited a bimodal distribution with two peaks coinciding with traffic rush hours. On haze days airborne fungi was mainly attached to PM2.5, whereas bacteria and TAM were mainly distributed in coarse PM. The relative abundance of Chao1, Shannon and Simpson indices of bacterial communities were higher in the non-haze day samples, for the reason that high PM2.5 levels with a large specific surface area may absorb more toxic and harmful substances on haze days, which should affect microbial growth. At the generic level, the relative abundance of Rhodococcus, Paracoccus, Acinetobacter, and Kocuria on haze days was higher than that on non-haze days, indicating a higher risk of contracting pathogenic pneumonia. The results of the redundancy analysis revealed that PM2.5 and water-soluble inorganic ions (WSIIs, NO3-, SO42+, and NH4+) strongly affected the bacterial communities on non-haze days, especially Acinetobacter. The atmospheric oxidation capacity (Ox) had a significant effect on bacterial communities during haze episodes, which were positively correlated with Paracoccus, Deinococcus, Sphingomonas, and Rubellimicrobium and were negatively correlated with Rhodococcus. These results provide valuable data to elucidate the formation and evolution of bioaerosol between haze and non-haze events and its potential threats to human health.
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Affiliation(s)
- Liu Yang
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China; Key Lab of Aerosol Chemistry & Physics, SKLLQG, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710049, China
| | - Zhenxing Shen
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China; Key Lab of Aerosol Chemistry & Physics, SKLLQG, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710049, China.
| | - Junqiang Wei
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xiuru Wang
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Hongmei Xu
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Jian Sun
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Qiyuan Wang
- Key Lab of Aerosol Chemistry & Physics, SKLLQG, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710049, China
| | - Junji Cao
- Key Lab of Aerosol Chemistry & Physics, SKLLQG, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710049, China
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Ginn O, Lowry S, Brown J. A systematic review of enteric pathogens and antibiotic resistance genes in outdoor urban aerosols. ENVIRONMENTAL RESEARCH 2022; 212:113097. [PMID: 35339466 DOI: 10.1016/j.envres.2022.113097] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 02/10/2022] [Accepted: 03/06/2022] [Indexed: 06/14/2023]
Abstract
Aerosol transport of enteric microbiota including fecal pathogens and antimicrobial resistance genes (ARGs) has been documented in a range of settings but remains poorly understood outside indoor environments. We conducted a systematic review of the peer-reviewed literature to summarize evidence on specific enteric microbiota including enteric pathogens and ARGs that have been measured in aerosol samples in urban settings where the risks of outdoor exposure and antibiotic resistance (AR) spread may be highest. Following PRISMA guidelines, we conducted a key word search for articles published within the years 1990-2020 using relevant data sources. Two authors independently conducted the keyword searches of databases and conducted primary and secondary screenings before merging results. To be included, studies contained extractable data on enteric microbes and AR in outdoor aerosols regardless of source confirmation and reported on qualitative, quantitative, or viability data on enteric microbes or AR. Qualitative analyses and metric summaries revealed that enteric microbes and AR have been consistently reported in outdoor aerosols, generally via relative abundance measures, though gaps remain preventing full understanding of the role of the aeromicrobiological pathway in the fate and transport of enteric associated outdoor aerosols. We identified remaining gaps in the evidence base including a need for broad characterization of enteric pathogens in bioaerosols beyond bacterial genera, a need for greater sampling in locations of high enteric disease risk, and a need for quantitative estimation of microbial and nucleic acid densities that may be applied to fate and transport models and in quantitative microbial risk assessment.
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Affiliation(s)
- Olivia Ginn
- Department of Civil & Environmental Engineering & Earth Science, University of Notre Dame, Notre Dame, IN, 46556, USA.
| | - Sarah Lowry
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, United States
| | - Joe Brown
- Deparment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, 27599, United States.
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Jiang S, Sun B, Zhu R, Che C, Ma D, Wang R, Dai H. Airborne microbial community structure and potential pathogen identification across the PM size fractions and seasons in the urban atmosphere. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 831:154665. [PMID: 35314242 DOI: 10.1016/j.scitotenv.2022.154665] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 03/14/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
As a vital component of airborne bioaerosols, bacteria and fungi seriously endanger human health as pathogens and allergens. However, comprehensive effects of environmental variables on airborne microbial community structures remain poorly understood across the PM sizes and seasons. We collected atmospheric PM1.0, PM2.5, and PM10 samples in Hefei, a typical rapidly-developing city in East China, across three seasons, and performed a comprehensive analysis of airborne microbial community structures using qPCR and high-throughput sequencing. Overall the bacterial and fungal abundances in PM1.0 were one to two orders of magnitude higher than those in PM2.5 and PM10 across seasons, but their α-diversity tended to increase from PM1.0 to PM10. The bacterial gene abundances showed a strong positive correlation (P < 0.05) with atmospheric SO2 and NO2 concentrations and air quality index. The bacterial gene abundances were significantly higher (P = 0.001) than fungi, and the bacterial diversity showed stronger seasonality. The PM sizes influenced distribution patterns for airborne microbial communities within the same season. Source-tracking analysis indicated that soils, plants, human and animal feces represented important sources of airborne bacteria with a total relative abundance of more than 60% in summer, but total abundance from the unidentified sources surpassed in fall and winter. Total 10 potential bacterial and 12 potential fungal pathogens were identified at the species level with the highest relative abundances in summer, and their abundances increased with the PM sizes. Together, our results indicated that a complex set of environmental factors, including water-soluble ions in PM, changes in air pollutant levels and meteorological conditions, and shifts in the relative importance of available microbial sources, acted to control the seasonal compositions of microbial communities in the urban atmosphere.
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Affiliation(s)
- Shaoyi Jiang
- Institute of Polar Environment & Anhui Key Laboratory of Polar Environment and Global Change, School of Earth and Space Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Bowen Sun
- Institute of Polar Environment & Anhui Key Laboratory of Polar Environment and Global Change, School of Earth and Space Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Renbin Zhu
- Institute of Polar Environment & Anhui Key Laboratory of Polar Environment and Global Change, School of Earth and Space Sciences, University of Science and Technology of China, Hefei 230026, China.
| | - Chenshuai Che
- Institute of Polar Environment & Anhui Key Laboratory of Polar Environment and Global Change, School of Earth and Space Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Dawei Ma
- State Grid Anhui Electric Power Research Institute, Hefei 230601, China
| | - Runfang Wang
- State Grid Anhui Electric Power Research Institute, Hefei 230601, China
| | - Haitao Dai
- Institute of Polar Environment & Anhui Key Laboratory of Polar Environment and Global Change, School of Earth and Space Sciences, University of Science and Technology of China, Hefei 230026, China
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9
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Sharma Ghimire P, Joshi DR, Tripathee L, Chen P, Sajjad W, Kang S. Seasonal taxonomic composition of microbial communal shaping the bioaerosols milieu of the urban city of Lanzhou. Arch Microbiol 2022; 204:222. [PMID: 35344106 DOI: 10.1007/s00203-022-02832-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 03/02/2022] [Accepted: 03/07/2022] [Indexed: 11/28/2022]
Abstract
Here, the taxonomical composition and seasonal dynamics of airborne microbial communities were described in the urban city of Lanzhou, Northwest China. Year-long samples were studied in two filter membranes (Quartz and PTFE). Higher microbial loads were reported in the PTFE than in the quartz filter. Onefold decrease was reported in bacterial loads in spring and summer than winter and autumn for both filters. The fungal loadings were lowest during winter and highest during autumn, followed by summer. The microbial communities included Actinobacteria and Proteobacteria, Ascomycota, and Basidiomycota as major components. Maximum abundance of the members from Gammaproteobacteria, Coriobacteria and Clostridia were studied in all seasons on PTFE membrane, followed by, Erysipelotrichia, Negativicutes and Fusobacteria. Members of Actinobacteria and Bacilli showed higher abundance in spring and winter, with a small proportion during autumn. Members of Clostridia, Gammaproteobacteria, Bacilli, and Actinobacteria showed maximum abundance on the quartz filter in all the seasons. Similarly, on the PTFE, fungi including Dothideomycetes and Agaricomycetes were dominant, followed by Saccharomycetes during summer and winter. The result showed that PM2.5, SO42-, NO2-, Na+, EC, and OC are important environmental parameters influencing the seasonal microbial community. However, the relation of the microbiome with the environment cannot be confidently defined because the environmental factors are changeable and yet interrelated.
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Affiliation(s)
- Prakriti Sharma Ghimire
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou, 730000, People's Republic of China.,Himalayan Environment Research Institute (HERI), Kathmandu, 44602, Nepal
| | - Dev Raj Joshi
- Central Department of Microbiology, Tribhuvan University, Kirtipur, 44613, Nepal
| | - Lekhendra Tripathee
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou, 730000, People's Republic of China.,Himalayan Environment Research Institute (HERI), Kathmandu, 44602, Nepal
| | - Pengfei Chen
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou, 730000, People's Republic of China
| | - Wasim Sajjad
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou, 730000, People's Republic of China
| | - Shichang Kang
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou, 730000, People's Republic of China. .,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing, 100085, People's Republic of China. .,University of Chinese Academy of Sciences, Beijing, 100864, People's Republic of China.
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10
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Yan X, Ma J, Chen X, Lei M, Li T, Han Y. Characteristics of airborne bacterial communities and antibiotic resistance genes under different air quality levels. ENVIRONMENT INTERNATIONAL 2022; 161:107127. [PMID: 35180669 DOI: 10.1016/j.envint.2022.107127] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 01/05/2022] [Accepted: 01/29/2022] [Indexed: 06/14/2023]
Abstract
Pathogenic bacteria and antibiotic resistance genes (ARGs) in bioaerosols are major threats to human health. In this study, the microbial community structure and ARG distribution characteristics of airborne bacteria in total suspended particulates (TSP) and PM2.5 were investigated under different air quality levels in Xinxiang, Central China. The results revealed that with the deterioration of air quality, the concentrations of airborne bacteria in both TSP and PM2.5 decreased; however, the relative amounts of pathogenic bacteria increased. The predominant genera in pathogenic bacteria of Bacillus, Sphingomonas, Corynebacterium, Rhodococcus, and Staphylococcus were identified in both TSP and PM2.5. Although the airborne bacteria concentrations and absolute abundances of ARGs in TSP were higher than those in PM2.5 under identical air quality conditions, the bacterial community structure and relative amounts of pathogenic bacteria were similar. In addition, the relationship between environmental factors of ions, metal elements, and meteorological parameters and the community structures of airborne bacteria and pathogenic bacteria were also analyzed. The effects of soluble ions and metal elements on several dominant genera of total bacteria and pathogenic bacteria differed, probably due to the strong tolerance of pathogenic bacteria to harsh atmospheric environments Different subtypes of ARGs showed various distribution characteristics with variations in air quality. The deterioration of air quality can inhibit the dissemination of ARGs, as the minimum values of all ARGs and class 1 integrase intI1 were observed under Severely Polluted conditions. This study provides a comprehensive understanding of the effect of air pollution levels on the airborne bacteria community composition and ARG distribution.
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Affiliation(s)
- Xu Yan
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Key Laboratory for Environmental Pollution Control, Henan Normal University, Xinxiang 453007, China.
| | - Jiahui Ma
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Key Laboratory for Environmental Pollution Control, Henan Normal University, Xinxiang 453007, China
| | - Xinqing Chen
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Key Laboratory for Environmental Pollution Control, Henan Normal University, Xinxiang 453007, China
| | - Miao Lei
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Key Laboratory for Environmental Pollution Control, Henan Normal University, Xinxiang 453007, China
| | - Tianning Li
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Key Laboratory for Environmental Pollution Control, Henan Normal University, Xinxiang 453007, China
| | - Yunping Han
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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11
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Tajiki F, Asgari HM, Zamani I, Ghanbari F. Assessing the relationship between airborne fungi and potential dust sources using a combined approach. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:17799-17810. [PMID: 34676476 DOI: 10.1007/s11356-021-17028-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 10/10/2021] [Indexed: 06/13/2023]
Abstract
Dust events impose negative socio-economic, health, and environmental impacts on vulnerable areas and reflect their sources' physiochemical and biological characteristics. This study aimed to assess the impact of two dust sources on the concentration and diversity of airborne fungi in one of the dustiest areas in the world. This study is the first attempt to investigate the relationship between dust sources fungal community and those in airborne dust. Also, the contribution of dust sources to airborne fungi was estimated. Air masses arriving at the study area were assessed using local wind rose and the HYSPLIT model. Sampling was carried out from airborne dust at the Arvand Free Zone as target areas and soil in the dried parts of the Hor al-Azim and Shadegan wetlands as source areas to explore the relationship between fungi in the dust sources and the downwind area. The samples were analyzed in the lab to extract DNA. The internal transcribed spacer (ITS) regions of the rDNA gene were amplified using the primers ITS1F and ITS4, and then PCR products were sent to the lab for sequencing. The raw DNA data were processed using the QIIME virtual box to pick operational taxonomic units and taxonomy assignments. The most common fungi at the genus level were in the order of Penicillium > Aspergillus > Alternaria > Fusarium > Paradendryphiella > Talaromyces. The similarity between air and soil fungal genera was investigated using richness and diversity indices, the phylogenetic tree, and principal component analysis. The results showed that the community structures of ambient fungi in the Hor al-Azim and Shadegan dust sources were more similar to those on dusty days than non-dusty days. The source tracker model was used to quantify the contributions of known dust sources to airborne fungi. The results showed that the main source of airborne fungi was Hor al-Azim on dusty and non-dusty days. This study's results can help managers identify and prioritize dust sources regarding fungal species.
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Affiliation(s)
- Forough Tajiki
- Department of Environment, Faculty of Natural Resources, Khorramshahr University of Marine Sciences and Technology, P.B. 699, Khorramshahr, Iran
| | - Hossein Mohammad Asgari
- Department of Environment, Faculty of Natural Resources, Khorramshahr University of Marine Sciences and Technology, P.B. 699, Khorramshahr, Iran.
| | - Isaac Zamani
- Department of Marine Biology, Faculty of Marine and Oceanic Sciences, Khorramshahr University of Marine Sciences and Technology, P.B. 699, Khorramshahr, Iran
| | - Farshid Ghanbari
- Research Center for Environmental Contaminants (RCEC), Abadan Faculty of Medical Sciences, Abadan, Iran
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12
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Comparison of Bacterial Community Structure in PM2.5 within Broiler Houses under Different Rearing Systems in China. SUSTAINABILITY 2022. [DOI: 10.3390/su14031357] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Background: In intensive poultry farming, high concentrations of indoor particulate matter (PM) impact production performance and welfare. In this study, PM2.5 level and bacterial community diversity were investigated in a multilayer cage house rearing system (CH) and a net flooring house rearing system (FH) during different growth stages to clarify the effects of the rearing systems on the diversity of airborne bacteria and help improve health management. Methods: The IC and high-throughput sequencing were used for ion composition and bacterial diversity analysis of PM2.5 collected from CH and FH. Results: The concentrations of NH3, CO2 and PM2.5 in CH were significantly lower than FH (p < 0.001) in both middle and late rearing stages. PM concentrations gradually increased with broiler growth only in FH. The water-soluble ions of PM2.5 samples had no significant difference between the two systems (p > 0.05). Firmicutes, Actinobacteria and Proteobacteria were the most abundant phyla in both the atmosphere and the broiler houses, but the composition was significantly different. The bacterial community in the broiler houses had strong correlations with temperature, humidity and PM of extremely high concentrations. Ions had stronger correlations with microbial community structure. Conclusions: The superiority of CH in environmental control over FH indicates that improved techniques in environmental control and breeding management can greatly reduce farming air pollution and improve the health management of broiler houses.
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13
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Airborne bacterial community associated with fine particulate matter (PM2.5) under different air quality indices in Temuco city, southern Chile. Arch Microbiol 2022; 204:148. [PMID: 35061108 PMCID: PMC8776980 DOI: 10.1007/s00203-021-02740-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 12/21/2021] [Accepted: 12/22/2021] [Indexed: 11/02/2022]
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14
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Xie Z, Du S, Ma T, Hou J, Zeng X, Li Y. High time-resolved characterization of airborne microbial community during a typical haze pollution process. JOURNAL OF HAZARDOUS MATERIALS 2021; 415:125722. [PMID: 34088212 DOI: 10.1016/j.jhazmat.2021.125722] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 03/04/2021] [Accepted: 03/19/2021] [Indexed: 06/12/2023]
Abstract
Variations of bioaerosol characteristics during the process of haze pollution have rarely been explored. In this study, high time-resolved variations of the community structures of bacteria, fungi, and ammonia-oxidizing microorganisms (AOMs) were assessed during a typical haze pollution process. The impacts of meteorological factors, water-soluble inorganic ions (WSII), and organic dicarboxylic acids (DCA) on the airborne microbial community were systematically evaluated. The results showed that the bacterial community varied greatly during the formation stages of haze pollution, and tended to stabilize with the further development of haze pollution. Nevertheless, variations of the fungal community lasted throughout the whole haze pollution process. Furthermore, Nitrososphaera absolutely dominated the ammonia-oxidizing archaea (AOA) and declined as PM2.5 burst. Network analysis identified relatively weak interactions and co-occurrence patterns between dominant fungal genera. Importantly, dust source ions and PM2.5 acidity exerted the most significant impacts on bacterial and fungal communities. These results identify the high time-resolved variations of airborne microbial communities during the formation and development of haze pollution process, and provide valuable data to better understand the interaction between bioaerosols and haze pollution.
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Affiliation(s)
- Zhengsheng Xie
- School of Water and Environment, Chang'an University, Xi'an 710054, China.
| | - Shengli Du
- School of Water and Environment, Chang'an University, Xi'an 710054, China
| | - Tianfeng Ma
- School of Water and Environment, Chang'an University, Xi'an 710054, China
| | - Junli Hou
- School of Water and Environment, Chang'an University, Xi'an 710054, China
| | - Xuelin Zeng
- School of Water and Environment, Chang'an University, Xi'an 710054, China
| | - Yanpeng Li
- School of Water and Environment, Chang'an University, Xi'an 710054, China; Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region (Chang'an University), Ministry of Education, Xi'an 710054, China.
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15
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Inferring long-distance connectivity shaped by air-mass movement for improved experimental design in aerobiology. Sci Rep 2021; 11:11093. [PMID: 34045612 PMCID: PMC8159928 DOI: 10.1038/s41598-021-90733-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 05/13/2021] [Indexed: 02/04/2023] Open
Abstract
The collection and analysis of air samples for the study of microbial airborne communities or the detection of airborne pathogens is one of the few insights that we can grasp of a continuously moving flux of microorganisms from their sources to their sinks through the atmosphere. For large-scale studies, a comprehensive sampling of the atmosphere is beyond the scopes of any reasonable experimental setting, making the choice of the sampling locations and dates a key factor for the representativeness of the collected data. In this work we present a new method for revealing the main patterns of air-mass connectivity over a large geographical area using the formalism of spatio-temporal networks, that are particularly suitable for representing complex patterns of connection. We use the coastline of the Mediterranean basin as an example. We reveal a temporal pattern of connectivity over the study area with regions that act as strong sources or strong receptors according to the season of the year. The comparison of the two seasonal networks has also allowed us to propose a new methodology for comparing spatial weighted networks that is inspired from the small-world property of non-spatial networks.
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16
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Salzmann AP, Arora N, Russo G, Kreutzer S, Snipen L, Haas C. Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers. Forensic Sci Int Genet 2021; 53:102537. [PMID: 34090061 DOI: 10.1016/j.fsigen.2021.102537] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 05/21/2021] [Accepted: 05/22/2021] [Indexed: 01/16/2023]
Abstract
Current body fluid identification methods do not reveal any information about the time since deposition (TsD) of biological traces, even though determining the age of traces could be crucial for the investigative process. To determine the utility of microbial RNA markers for TsD estimation, we examined RNA sequencing data from five forensically relevant body fluids (blood, menstrual blood, saliva, semen, and vaginal secretion) over seven time points, ranging from fresh to 1.5 years. One set of samples was stored indoors while another was exposed to outdoor conditions. In outdoor samples, we observed a consistent compositional shift, occurring after 4 weeks: this shift was characterized by an overall increase in non-human eukaryotic RNA and an overall decrease in prokaryotic RNA. In depth analyses showed a high fraction of tree, grass and fungal signatures, which are characteristic for the environment the samples were exposed to. When examining the prokaryotic fraction in more detail, three bacterial phyla were found to exhibit the largest changes in abundance, namely Actinobacteria, Proteobacteria and Firmicutes. More detailed analyses at the order level were done using a Lasso regression analysis to find a predictive subset of bacterial taxa. We found 26 bacterial orders to be indicative of sample age. Indoor samples did not reveal such a clear compositional change at the domain level: eukaryotic and prokaryotic abundance remained relatively stable across the assessed time period. Nonetheless, a Lasso regression analysis identified 32 bacterial orders exhibiting clear changes over time, enabling the prediction of TsD. For both indoor and outdoor samples, a larger number (around 60%) of the bacterial orders identified as indicative of TsD are part of the Actinobacteria, Proteobacteria and Firmicutes. In summary, we found that the observed changes across time are not primarily due to changes associated with body fluid specific bacteria but mostly due to accumulation of bacteria from the environment. Orders of these environmental bacteria could be evaluated for TsD prediction, considering the location and environment of the crime scene. However, further studies are needed to verify these findings, determine the applicability across samples, replicates, donors, and other variables, and also to further assess the effect of different seasons and locations on the samples.
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Affiliation(s)
| | - Natasha Arora
- Zurich Institute of Forensic Medicine, University of Zurich, Switzerland
| | - Giancarlo Russo
- Functional Genomics Centre Zurich (FGCZ), University of Zurich/ETH Zurich, Switzerland
| | - Susanne Kreutzer
- Functional Genomics Centre Zurich (FGCZ), University of Zurich/ETH Zurich, Switzerland
| | - Lars Snipen
- Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway
| | - Cordula Haas
- Zurich Institute of Forensic Medicine, University of Zurich, Switzerland.
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17
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Núñez A, García AM, Moreno DA, Guantes R. Seasonal changes dominate long-term variability of the urban air microbiome across space and time. ENVIRONMENT INTERNATIONAL 2021; 150:106423. [PMID: 33578068 DOI: 10.1016/j.envint.2021.106423] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 01/25/2021] [Accepted: 01/25/2021] [Indexed: 05/24/2023]
Abstract
Compared to soil or aquatic ecosystems, the atmosphere is still an underexplored environment for microbial diversity. In this study, we surveyed the composition, variability and sources of microbes (bacteria and fungi) in the near surface atmosphere of a highly populated area, spanning ~ 4,000 Km2 around the city center of Madrid (Spain), in different seasonal periods along two years. We found a core of abundant bacterial genera robust across space and time, most of soil origin, while fungi were more sensitive to environmental conditions. Microbial communities showed clear seasonal patterns driven by variability of environmental factors, mainly temperature and accumulated rain, while local sources played a minor role. We also identified taxa in both groups characteristic of seasonal periods, but not of specific sampling sites or plant coverage. The present study suggests that the near surface atmosphere of urban environments contains an ecosystem stable across relatively large spatial and temporal scales, with a rather homogenous composition, modulated by climatic variations. As such, it contributes to our understanding of the long-term changes associated to the human exposome in the air of highly populated areas.
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Affiliation(s)
- Andrés Núñez
- Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (ETSII-UPM), Madrid, Spain; Department of Genetics and Microbiology, Facultad de Biología, Universidad de Murcia, Murcia, Spain
| | - Ana M García
- Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (ETSII-UPM), Madrid, Spain
| | - Diego A Moreno
- Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (ETSII-UPM), Madrid, Spain; Facultad de Farmacia, Universidad de Castilla-La Mancha (FF-UCLM), Albacete, Spain.
| | - Raúl Guantes
- Department of Condensed Matter Physics and Material Science Institute 'Nicolás Cabrera', Science Faculty, Universidad Autónoma de Madrid, Madrid, Spain; Institute for Condensed Matter Physics (IFIMAC), Science Faculty, Universidad Autónoma de Madrid, Madrid, Spain.
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18
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Petroselli C, Montalbani E, La Porta G, Crocchianti S, Moroni B, Casagrande C, Ceci E, Selvaggi R, Sebastiani B, Gandolfi I, Franzetti A, Federici E, Cappelletti D. Characterization of long-range transported bioaerosols in the Central Mediterranean. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 763:143010. [PMID: 33131845 PMCID: PMC7571444 DOI: 10.1016/j.scitotenv.2020.143010] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 10/06/2020] [Accepted: 10/07/2020] [Indexed: 05/13/2023]
Abstract
Airborne bacteria were characterized over a 2-y period via high-throughput massive sequencing of 16S rRNA gene in aerosol samples collected at a background mountain European Monitoring and Evaluation Programme (EMEP) Network site (Monte Martano, Italy) located in the Central Mediterranean area. The air mass origin of nineteen samples was identified by air mass modelling and a detailed chemical analysis was performed. Four main origins (Saharan, North-western, North-eastern, and Regional) were identified, and distinct microbial communities were associated with these air masses. Samples featured a great bacterial diversity with Protobacteria being the most abundant phylum, and Sphingomonas followed by Acidovorax, Acinetobacter and Stenotrophomonas the most abundant genera of the dataset. Bacterial genera including potential human and animal pathogens were more abundant in European and in Regional samples compared to Saharan samples; this stressed the relevance of anthropic impact on bacterial populations transported by air masses that cross densely populated areas. The principal aerosol chemical characteristics and the airborne bacterial communities were correlated by cluster analysis, similarity tests and non-metric multidimensional scaling analysis, explaining most of the variability observed. However, the strong correlation between bacterial community structure and air mass origin hampered the possibility to disentangle the effects of variations in bacterial populations and in dust provenance on variations in chemical variables.
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Affiliation(s)
- Chiara Petroselli
- Faculty of Engineering and Physical Sciences, University of Southampton, University Road, SO17 1BJ Southampton, UK
| | - Elena Montalbani
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Gianandrea La Porta
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Stefano Crocchianti
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Beatrice Moroni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Chiara Casagrande
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Elisa Ceci
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Roberta Selvaggi
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Bartolomeo Sebastiani
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Isabella Gandolfi
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milano, Italy
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milano, Italy
| | - Ermanno Federici
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - David Cappelletti
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy; CNR-ISP, Institute of Polar Science, National Research Council, Via Gobetti 101, Bologna, Italy.
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19
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Temporal Variability of Equivalent Black Carbon Components in Atmospheric Air in Southern Poland. ATMOSPHERE 2021. [DOI: 10.3390/atmos12010119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This study assesses the air quality in Zabrze (southern Poland) based on the ambient concentrations of equivalent black carbon (eBC). eBC measurement campaigns were carried out from April 2019 to March 2020 using a modern AE33 Aethalometer, accompanied by parallel measurements of gaseous pollutants, PM10 and meteorological parameters. The use of the two-component AE33 model allows for the determination of the eBC from fossil fuel combustion (eBCff) and biomass burning (eBCbb). The obtained results showed a clear seasonal variability of eBC concentrations, with higher average levels in the heating season (4.70 µg·m−3) compared to the non-heating one (1.79 µg·m−3). In both seasons, the eBCff component had a dominant share in total eBC, which indicates significant emissions from the combustion of fossil fuels for heating purposes and from local traffic sources. The obtained results showed high correlation coefficients with gaseous and particulate pollutants, with the strongest relationship for eBC and carbon monoxide (CO). During the non-heating and heating period, both anticyclone and cyclone systems played an important role in shaping eBC, eBCff and eBCbb concentrations. High concentrations of all components occurred with a significant decrease in air temperature and solar radiation in winter.
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20
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Palladino G, Morozzi P, Biagi E, Brattich E, Turroni S, Rampelli S, Tositti L, Candela M. Particulate matter emission sources and meteorological parameters combine to shape the airborne bacteria communities in the Ligurian coast, Italy. Sci Rep 2021; 11:175. [PMID: 33420408 PMCID: PMC7794459 DOI: 10.1038/s41598-020-80642-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 12/23/2020] [Indexed: 01/29/2023] Open
Abstract
Aim of the present study is to explore how the chemical composition of particulate matter (PM) and meteorological conditions combine in shaping the air microbiome in Savona (Italy), a medium-size, heavily inhabited urban settlement, hosting a wide range of industrial activities. In particular, the air microbiome and PM10 were monitored over six months in 2012. During that time, the air microbiome was highly dynamic, fluctuating between different compositional states, likely resulting from the aerosolization of different microbiomes emission sources. According to our findings, this dynamic process depends on the combination of local meteorological parameters and particle emission sources, which may affect the prevalent aerosolized microbiomes, thus representing further fundamental tools for source apportionment in a holistic approach encompassing chemical as well as microbiological pollution. In particular, we showed that, in the investigated area, industrial emissions and winds blowing from the inlands combine with an airborne microbiome which include faecal microbiomes components, suggesting multiple citizens' exposure to both chemicals and microorganisms of faecal origin, as related to landscape exploitation and population density. In conclusion, our findings support the need to include monitoring of the air microbiome compositional structure as a relevant factor for the final assessment of local air quality.
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Affiliation(s)
- Giorgia Palladino
- grid.6292.f0000 0004 1757 1758Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy ,Fano Marine Center (FMC), Viale Adriatico 1, 61032 Fano, Italy
| | - Pietro Morozzi
- grid.6292.f0000 0004 1757 1758Department of Chemistry “Giacomo Ciamician”, University of Bologna, Via Selmi 2, 40126 Bologna, Italy
| | - Elena Biagi
- grid.6292.f0000 0004 1757 1758Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy ,Fano Marine Center (FMC), Viale Adriatico 1, 61032 Fano, Italy
| | - Erika Brattich
- grid.6292.f0000 0004 1757 1758Department of Physics and Astronomy, University of Bologna, Viale Berti Pichat 6/2, 40127 Bologna, Italy
| | - Silvia Turroni
- grid.6292.f0000 0004 1757 1758Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy
| | - Simone Rampelli
- grid.6292.f0000 0004 1757 1758Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy
| | - Laura Tositti
- grid.6292.f0000 0004 1757 1758Department of Chemistry “Giacomo Ciamician”, University of Bologna, Via Selmi 2, 40126 Bologna, Italy
| | - Marco Candela
- grid.6292.f0000 0004 1757 1758Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy ,Fano Marine Center (FMC), Viale Adriatico 1, 61032 Fano, Italy
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21
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Ruiz-Gil T, Acuña JJ, Fujiyoshi S, Tanaka D, Noda J, Maruyama F, Jorquera MA. Airborne bacterial communities of outdoor environments and their associated influencing factors. ENVIRONMENT INTERNATIONAL 2020; 145:106156. [PMID: 33039877 DOI: 10.1016/j.envint.2020.106156] [Citation(s) in RCA: 75] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 09/20/2020] [Accepted: 09/21/2020] [Indexed: 05/16/2023]
Abstract
Microbial entities (such bacteria, fungi, archaea and viruses) within outdoor aerosols have been scarcely studied compared with indoor aerosols and nonbiological components, and only during the last few decades have their studies increased. Bacteria represent an important part of the microbial abundance and diversity in a wide variety of rural and urban outdoor bioaerosols. Currently, airborne bacterial communities are mainly sampled in two aerosol size fractions (2.5 and 10 µm) and characterized by culture-dependent (plate-counting) and culture-independent (DNA sequencing) approaches. Studies have revealed a large diversity of bacteria in bioaerosols, highlighting Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes as ubiquitous phyla. Seasonal variations in and dispersion of bacterial communities have also been observed between geographical locations as has their correlation with specific atmospheric factors. Several investigations have also suggested the relevance of airborne bacteria in the public health and agriculture sectors as well as remediation and atmospheric processes. However, although factors influencing airborne bacterial communities and standardized procedures for their assessment have recently been proposed, the use of bacterial taxa as microbial indicators of specific bioaerosol sources and seasonality have not been broadly explored. Thus, in this review, we summarize and discuss recent advances in the study of airborne bacterial communities in outdoor environments and the possible factors influencing their abundance, diversity, and seasonal variation. Furthermore, airborne bacterial activity and bioprospecting in different fields (e.g., the textile industry, the food industry, medicine, and bioremediation) are discussed. We expect that this review will reveal the relevance and influencing factors of airborne bacteria in outdoor environments as well as stimulate new investigations on the atmospheric microbiome, particularly in areas where air quality is a public concern.
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Affiliation(s)
- Tay Ruiz-Gil
- Doctorado en Ciencias de Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Temuco, Chile; Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile
| | - Jacquelinne J Acuña
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - So Fujiyoshi
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Microbial Genomics and Ecology, Office of Industry-Academia-Government and Community Collaboration, Hiroshima University, Hiroshima, Japan; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - Daisuke Tanaka
- Graduate School of Science and Engineering, University of Toyama, Toyama, Japan
| | - Jun Noda
- Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan; Graduate School of Veterinary Science, Rakuno Gakuen University, Hokkaido, Japan
| | - Fumito Maruyama
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Microbial Genomics and Ecology, Office of Industry-Academia-Government and Community Collaboration, Hiroshima University, Hiroshima, Japan; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - Milko A Jorquera
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan.
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22
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Aalismail NA, Díaz-Rúa R, Ngugi DK, Cusack M, Duarte CM. Aeolian Prokaryotic Communities of the Global Dust Belt Over the Red Sea. Front Microbiol 2020; 11:538476. [PMID: 33262740 PMCID: PMC7688470 DOI: 10.3389/fmicb.2020.538476] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 10/23/2020] [Indexed: 01/25/2023] Open
Abstract
Aeolian prokaryotic communities (APC) are important components of bioaerosols that are transported freely or attached to dust particles suspended in the atmosphere. Terrestrial and marine ecosystems are known to release and receive significant prokaryote loads into and from the surrounded atmospheric air. However, compared to terrestrial systems, there is a lack of microbial characterization of atmospheric dust over marine systems, such as the Red Sea, which receives significant terrestrial dust loads and is centrally located within the Global Dust Belt. Prokaryotic communities are likely to be particularly important in the Global Dust Belt, the area between the west coast of North Africa and Central Asia that supports the highest dust fluxes on the planet. Here we characterize the diversity and richness of the APC over the Red Sea ecosystem, the only sea fully contained within the Global Dust Belt. MiSeq sequencing was used to target 16S ribosomal DNA of two hundred and forty aeolian dust samples. These samples were collected at ∼7.5 m high above the sea level at coastal and offshore sampling sites over a 2-year period (2015–2017). The sequencing outcomes revealed that the APC in the atmospheric dust is dominated by Proteobacteria (42.69%), Firmicutes (41.11%), Actinobacteria, (7.69%), and Bacteroidetes (3.49%). The dust-associated prokaryotes were transported from different geographical sources and found to be more diverse than prokaryotic communities of the Red Sea surface water. Marine and soil originated prokaryotes were detected in APC. Hence, depending on the season, these groups may have traveled from other distant sources during storm events in the Red Sea region, where the APC structure is influenced by the origin and the concentration of aeolian dust particles. Accordingly, further studies of the impact of atmospheric organic aerosols on the recipient environments are required.
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Affiliation(s)
- Nojood A Aalismail
- Red Sea Research Center and Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Rubén Díaz-Rúa
- Red Sea Research Center and Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - David K Ngugi
- Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
| | - Michael Cusack
- Red Sea Research Center and Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Carlos M Duarte
- Red Sea Research Center and Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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Zoran MA, Savastru RS, Savastru DM, Tautan MN. Assessing the relationship between ground levels of ozone (O 3) and nitrogen dioxide (NO 2) with coronavirus (COVID-19) in Milan, Italy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 740:140005. [PMID: 32559534 PMCID: PMC7274116 DOI: 10.1016/j.scitotenv.2020.140005] [Citation(s) in RCA: 129] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 05/30/2020] [Accepted: 06/03/2020] [Indexed: 04/14/2023]
Abstract
This paper investigates the correlation between the high level of coronavirus SARS-CoV-2 infection accelerated transmission and lethality, and surface air pollution in Milan metropolitan area, Lombardy region in Italy. For January-April 2020 period, time series of daily average inhalable gaseous pollutants ozone (O3) and nitrogen dioxide (NO2), together climate variables (air temperature, relative humidity, wind speed, precipitation rate, atmospheric pressure field and Planetary Boundary Layer) were analyzed. In spite of being considered primarily transmitted by indoor bioaerosols droplets and infected surfaces or direct human-to-human personal contacts, it seems that high levels of urban air pollution, and climate conditions have a significant impact on SARS-CoV-2 diffusion. Exhibited positive correlations of ambient ozone levels and negative correlations of NO2 with the increased rates of COVID-19 infections (Total number, Daily New positive and Total Deaths cases), can be attributed to airborne bioaerosols distribution. The results show positive correlation of daily averaged O3 with air temperature and inversely correlations with relative humidity and precipitation rates. Viral genome contains distinctive features, including a unique N-terminal fragment within the spike protein, which allows coronavirus attachment on ambient air pollutants. At this moment it is not clear if through airborne diffusion, in the presence of outdoor and indoor aerosols, this protein "spike" of the new COVID-19 is involved in the infectious agent transmission from a reservoir to a susceptible host during the highest nosocomial outbreak in some agglomerated industrialized urban areas like Milan is. Also, in spite of collected data for cold season (winter-early spring) period, when usually ozone levels have lower values than in summer, the findings of this study support possibility as O3 can acts as a COVID-19 virus incubator. Being a novel pandemic coronavirus version, it might be ongoing during summer conditions associated with higher air temperatures, low relative humidity and precipitation levels.
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Affiliation(s)
- Maria A Zoran
- IT Department, National Institute of R&D for Optoelectronics, Atomistilor Street 409, MG5, Magurele-Bucharest 077125, Romania.
| | - Roxana S Savastru
- IT Department, National Institute of R&D for Optoelectronics, Atomistilor Street 409, MG5, Magurele-Bucharest 077125, Romania
| | - Dan M Savastru
- IT Department, National Institute of R&D for Optoelectronics, Atomistilor Street 409, MG5, Magurele-Bucharest 077125, Romania
| | - Marina N Tautan
- IT Department, National Institute of R&D for Optoelectronics, Atomistilor Street 409, MG5, Magurele-Bucharest 077125, Romania
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Banchi E, Ametrano CG, Tordoni E, Stanković D, Ongaro S, Tretiach M, Pallavicini A, Muggia L. Environmental DNA assessment of airborne plant and fungal seasonal diversity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 738:140249. [PMID: 32806340 DOI: 10.1016/j.scitotenv.2020.140249] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 05/25/2020] [Accepted: 06/14/2020] [Indexed: 05/06/2023]
Abstract
Environmental DNA (eDNA) metabarcoding and metagenomics analyses can improve taxonomic resolution in biodiversity studies. Only recently, these techniques have been applied in aerobiology, to target bacteria, fungi and plants in airborne samples. Here, we present a nine-month aerobiological study applying eDNA metabarcoding in which we analyzed simultaneously airborne diversity and variation of fungi and plants across five locations in North and Central Italy. We correlated species composition with the ecological characteristics of the sites and the seasons. The most abundant taxa among all sites and seasons were the fungal genera Cladosporium, Alternaria, and Epicoccum and the plant genera Brassica, Corylus, Cupressus and Linum, the latter being much more variable among sites. PERMANOVA and indicator species analyses showed that the plant diversity from air samples is significantly correlated with seasons, while that of fungi varied according to the interaction between seasons and sites. The results consolidate the performance of a new eDNA metabarcoding pipeline for the simultaneous amplification and analysis of airborne plant and fungal particles. They also highlight the promising complementarity of this approach with more traditional biomonitoring frameworks and routine reports of air quality provided by environmental agencies.
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Affiliation(s)
- Elisa Banchi
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; National Institute of Oceanography and Applied Geophysics - OGS, via Piccard 54, I-34151 Trieste, Italy
| | - Claudio G Ametrano
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy
| | - Enrico Tordoni
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy
| | - David Stanković
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; Marine Biology Station, National Institute of Biology, Fornače 41, SLO-6330 Piran, Slovenia
| | - Silvia Ongaro
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy
| | - Mauro Tretiach
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy
| | - Alberto Pallavicini
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; National Institute of Oceanography and Applied Geophysics - OGS, via Piccard 54, I-34151 Trieste, Italy.
| | - Lucia Muggia
- Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy.
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25
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Sarda-Estève R, Baisnée D, Guinot B, Mainelis G, Sodeau J, O’Connor D, Besancenot JP, Thibaudon M, Monteiro S, Petit JE, Gros V. Atmospheric Biodetection Part I: Study of Airborne Bacterial Concentrations from January 2018 to May 2020 at Saclay, France. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17176292. [PMID: 32872373 PMCID: PMC7504533 DOI: 10.3390/ijerph17176292] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Revised: 08/20/2020] [Accepted: 08/24/2020] [Indexed: 11/16/2022]
Abstract
Background: The monitoring of bioaerosol concentrations in the air is a relevant endeavor due to potential health risks associated with exposure to such particles and in the understanding of their role in climate. In this context, the atmospheric concentrations of bacteria were measured from January 2018 to May 2020 at Saclay, France. The aim of the study was to understand the seasonality, the daily variability, and to identify the geographical origin of airborne bacteria. Methods: 880 samples were collected daily on polycarbonate filters, extracted with purified water, and analyzed using the cultivable method and flow cytometry. A source receptor model was used to identify the origin of bacteria. Results: A tri-modal seasonality was identified with the highest concentrations early in spring and over the summer season with the lowest during the winter season. Extreme changes occurred daily due to rapid changes in meteorological conditions and shifts from clean air masses to polluted ones. Conclusion: Our work points toward bacterial concentrations originating from specific seasonal-geographical ecosystems. During pollution events, bacteria appear to rise from dense urban areas or are transported long distances from their sources. This key finding should drive future actions to better control the dispersion of potential pathogens in the air, like persistent microorganisms originating from contaminated areas.
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Affiliation(s)
- Roland Sarda-Estève
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, Unité mixte de recherche CEA-CNRS-UVSQ, 91190 Saint-Aubin, France; (D.B.); (J.-E.P.); (V.G.)
- Correspondence: ; Tel.: +33-1-69-08-97-47
| | - Dominique Baisnée
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, Unité mixte de recherche CEA-CNRS-UVSQ, 91190 Saint-Aubin, France; (D.B.); (J.-E.P.); (V.G.)
| | - Benjamin Guinot
- Laboratoire d’Aérologie, Université Toulouse III, CNRS, UPS, 31400 Toulouse, France;
- Réseau National de Surveillance Aérobiologique, 69690 Brussieu, France; (J.P.B.); (M.T.)
| | - Gediminas Mainelis
- Department of Environmental Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901-8525, USA;
| | - John Sodeau
- Department of Chemistry and Environmental Research Institute, University College Cork, T12 YN60 Cork, Ireland;
| | - David O’Connor
- School of Chemical and Pharmaceutical Sciences, Technological University of Dublin, D06F793 Dublin 6, Ireland;
| | - Jean Pierre Besancenot
- Réseau National de Surveillance Aérobiologique, 69690 Brussieu, France; (J.P.B.); (M.T.)
| | - Michel Thibaudon
- Réseau National de Surveillance Aérobiologique, 69690 Brussieu, France; (J.P.B.); (M.T.)
| | - Sara Monteiro
- Themo Fisher Scientific, 18 avenue de Quebec, 91941 Villebon Courtaboeuf, France;
| | - Jean-Eudes Petit
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, Unité mixte de recherche CEA-CNRS-UVSQ, 91190 Saint-Aubin, France; (D.B.); (J.-E.P.); (V.G.)
| | - Valérie Gros
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, Unité mixte de recherche CEA-CNRS-UVSQ, 91190 Saint-Aubin, France; (D.B.); (J.-E.P.); (V.G.)
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26
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A Review on Airborne Microbes: The Characteristics of Sources, Pathogenicity and Geography. ATMOSPHERE 2020. [DOI: 10.3390/atmos11090919] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Microbes are widespread and have been much more studied in recent years. In this review, we describe detailed information on airborne microbes that commonly originate from soil and water through liquid–air and soil–air interface. The common bacteria and fungi in the atmosphere are the phyla of Firmicutes, Proteobacteria, Bacteroides, Actinobacteria, Cyanobacteria and Ascomycota, Basidiomycota, Chytridiomycota, Rozellomycota that include most pathogens leading to several health problems. In addition, the stability of microbial community structure in bioaerosols could be affected by many factors and some special weather conditions like dust events even can transport foreign pathogens to other regions, affecting human health. Such environments are common for a particular place and affect the nature and interaction of airborne microbes with them. For instance, meteorological factors, haze and foggy days greatly influence the concentration and abundance of airborne microbes. However, as microorganisms in the atmosphere are attached on particulate matters (PM), the high concentration of chemical pollutants in PM tends to restrain the growth of microbes, especially gathering atmospheric pollutants in heavy haze days. Moreover, moderate haze concentration and/or common chemical components could provide suitable microenvironments and nutrition for airborne microorganism survival. In summary, the study reviews much information and characteristics of airborne microbes for further study.
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27
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Romano S, Becagli S, Lucarelli F, Rispoli G, Perrone MR. Airborne bacteria structure and chemical composition relationships in winter and spring PM10 samples over southeastern Italy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 730:138899. [PMID: 32388366 DOI: 10.1016/j.scitotenv.2020.138899] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 04/18/2020] [Accepted: 04/20/2020] [Indexed: 06/11/2023]
Abstract
The Redundancy Discrimination Analysis (RDA) and Spearman correlation coefficients were used to investigate relationships between airborne bacteria at the phylum and genus level and chemical species in winter and spring PM10 samples over Southeastern Italy. The identification of main chemical species/pollution sources that were related to and likely affected the bacterial community structure was the main goal of this work. The 16S rRNA gene metabarcoding approach was used to characterize airborne bacteria. Seventeen phyla and seventy-nine genera contributing each by mean within-sample relative abundance percentage > 0.01% were identified in PM10 samples, which were chemically characterized for 33 species, including ions, metals, OC, and EC (organic and elemental carbon, respectively). Chemical species were associated with six different pollution sources. A shift from winter to spring in both bacterial community structure and chemical species mass concentrations/sources and the relationships between them was observed. RDA triplots pointed out significant correlations for all tested bacterial phyla (genera) with other phyla (genera) and/or with chemical species, in contrast to correlation coefficient results, which showed that few phyla (genera) were significantly correlated with chemical species. More specifically, in winter Bacillus and Chryseobacterium were the only genera significantly correlated with chemical species likely associated with particles from soil-dust and anthropogenic pollution source, respectively. In spring, Enterobacter and Sphingomonas were the only genera significantly correlated with chemical species likely associated with particles from the anthropogenic pollution and the marine and soil-dust sources, respectively. The results of this study also showed that the correlation coefficients were the best tool to obtain unequivocal identifications of the correlations of phyla (genera) with chemical species. The seasonal changes of the PM10 chemical composition, the microbial community structure, and their relationships suggested that the seasonal changes of atmospheric particles may have likely contributed to seasonal changes of bacterial community in the atmosphere.
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Affiliation(s)
- S Romano
- Department of Mathematics and Physics, University of Salento, Via per Arnesano, 73100 Lecce, Italy.
| | - S Becagli
- Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Florence, Italy
| | - F Lucarelli
- Department of Physics, University of Florence and I.N.F.N. (Unit of Florence), Via Sansone, 50019, Sesto Fiorentino, Florence, Italy
| | - G Rispoli
- Department of Mathematics and Physics, University of Salento, Via per Arnesano, 73100 Lecce, Italy
| | - M R Perrone
- Department of Mathematics and Physics, University of Salento, Via per Arnesano, 73100 Lecce, Italy
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28
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Núñez A, Moreno DA. The Differential Vertical Distribution of the Airborne Biological Particles Reveals an Atmospheric Reservoir of Microbial Pathogens and Aeroallergens. MICROBIAL ECOLOGY 2020; 80:322-333. [PMID: 32221644 DOI: 10.1007/s00248-020-01505-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 03/17/2020] [Indexed: 06/10/2023]
Abstract
The most abundant biological particles present in the air are bacteria, fungal propagules and pollen grains. Many of them are proved allergens or even responsible for airborne infectious diseases, which supports the increase of studies in recent years on their composition, diversity, and factors involved in their variability. However, most studies in urban areas are conducted close to ground level and a factor such as height is rarely taken into account. Thus, the information about how the composition of biological particles changes with this variable is scarce. Here, we examined the differential distribution of bacteria, fungi, and plants at four altitudes (up to ∼ 250 m) in a metropolitan area using high-throughput DNA sequencing. Most taxa were present at all levels (common taxa). However, a transitional layer between 80 and 150 m seemed to affect the scattering of these bioaerosols. Taxa not present at all altitudes (non-common) showed an upward tendency of diversity for bacteria and plants with height, while the opposite trend was observed for fungi. Certain patterns were observed for fungi and specific plant genera, while bacterial taxa showed a more arbitrary distribution and no patterns were found. We detected a wide variety of aeroallergens and potential pathogens at all heights, which summed a substantial portion of the total abundance for fungi and plants. We also identified potential connections between the biological particles based on their abundances across the vertical section.
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Affiliation(s)
- Andrés Núñez
- Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (ETSII-UPM), c/ José Gutiérrez Abascal 2, E-28006, Madrid, Spain
- Department of Genetics and Microbiology, Facultad de Biología, Universidad de Murcia, E-30100, Murcia, Spain
| | - Diego A Moreno
- Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (ETSII-UPM), c/ José Gutiérrez Abascal 2, E-28006, Madrid, Spain.
- Facultad de Farmacia, Universidad de Castilla-La Mancha (FF-UCLM), Avda. Dr. José María Sánchez Ibáñez s/n, E-02008, Albacete, Spain.
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29
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Wei M, Li M, Xu C, Xu P, Liu H. Pollution characteristics of bioaerosols in PM 2.5 during the winter heating season in a coastal city of northern China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:27750-27761. [PMID: 32399880 DOI: 10.1007/s11356-020-09070-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 04/27/2020] [Indexed: 06/11/2023]
Abstract
Frequent heavy air pollution occurred during the winter heating season of northern China. In this study, PM2.5 (particles with an aerodynamic diameter less than 2.5 μm) was collected from a coastal city of China during the winter heating season from January 1 to March 31, 2018, and the soluble ions, organic carbon (OC), elemental carbon (EC), bacterial, endotoxin, and fungal concentration in PM2.5 were analyzed. During the winter heating season, PM2.5 and bioaerosols increased on polluted days, and the secondary inorganic ions, including NO3-, NH4+, and SO42-, increased significantly. Meteorological factors, such as wind direction and wind speed, had major impacts on the distributions of PM2.5 and bioaerosols. Pollutant concentration was high when there was a westerly wind with the speed of 3-6 m/s from inland area. Using the air mass backward trajectories and principal component analysis, we elucidate the potential origins of bioaerosol in PM2.5. The backward trajectory suggested that air mass for polluted samples (PM2.5 > 75 μg/m3) commonly originated from continent (9.62%), whereas air masses for clean samples (PM2.5 < 35 μg/m3) were mainly from marine (56.73%). The interregional transport of pollutants from continental area contributed most to PM2.5. Principal component analysis of the water-soluble ions and bioaerosol indicated that air pollution of the coastal city was greatly affected by coal combustion, biomass burning, and regional transmission of high-intensity pollutants from continent. Among that, interregional transport, biomass burning, and dust from soil and plants were main sources of bioaerosol. Our findings provide important insights into the origins and characteristics of bioaerosol in PM2.5 during the winter heating season of the coastal city in northern China.
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Affiliation(s)
- Min Wei
- College of Geography and Environment, Shandong Normal University, Jinan, 250014, China.
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai, 200433, China.
| | - Mingyan Li
- College of Geography and Environment, Shandong Normal University, Jinan, 250014, China
| | - Caihong Xu
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai, 200433, China
| | - Pengju Xu
- College of Geography and Environment, Shandong Normal University, Jinan, 250014, China
| | - Houfeng Liu
- College of Geography and Environment, Shandong Normal University, Jinan, 250014, China.
- Center for Environmental Technology and Policy Research, Shandong Normal University, Jinan, 250014, China.
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30
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Tignat-Perrier R, Dommergue A, Thollot A, Magand O, Amato P, Joly M, Sellegri K, Vogel TM, Larose C. Seasonal shift in airborne microbial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 716:137129. [PMID: 32044476 DOI: 10.1016/j.scitotenv.2020.137129] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Revised: 01/29/2020] [Accepted: 02/03/2020] [Indexed: 05/23/2023]
Abstract
Microorganisms are ubiquitous in the atmosphere. Global investigations on the geographical and temporal distribution of airborne microbial communities are critical for identifying the sources and the factors shaping airborne communities. At mid-latitude sites, a seasonal shift in both the concentration and diversity of airborne microbial communities has been systematically observed in the planetary boundary layer. While the factors suspected of affecting this seasonal change were hypothesized (e.g., changes in the surface conditions, meteorological parameters and global air circulation), our understanding on how these factors influence the temporal variation of airborne microbial communities, especially at the microbial taxon level, remains limited. Here, we investigated the distribution of both airborne bacterial and fungal communities on a weekly basis over more than one year at the mid-latitude and continental site of puy de Dôme (France; +1465 m altitude above sea level). The seasonal shift in microbial community structure was likely correlated to the seasonal changes in the characteristics of puy de Dôme's landscape (croplands and natural vegetation). The airborne microbial taxa that were the most affected by seasonal changes trended differently throughout the seasons in relation with their trophic mode. In addition, the windy and variable local meteorological conditions found at puy de Dôme were likely responsible for the intraseasonal variability observed in the composition of airborne microbial communities.
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Affiliation(s)
- Romie Tignat-Perrier
- Institut des Géosciences de l'Environnement, Université Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France; Environmental Microbial Genomics, CNRS UMR 5005 Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Écully, France.
| | - Aurélien Dommergue
- Institut des Géosciences de l'Environnement, Université Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Alban Thollot
- Institut des Géosciences de l'Environnement, Université Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Olivier Magand
- Institut des Géosciences de l'Environnement, Université Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Pierre Amato
- Institut de Chimie de Clermont-Ferrand, CNRS UMR 6096 Université Clermont Auvergne-Sigma, Clermont-Ferrand, France
| | - Muriel Joly
- Institut de Chimie de Clermont-Ferrand, CNRS UMR 6096 Université Clermont Auvergne-Sigma, Clermont-Ferrand, France
| | - Karine Sellegri
- Institut de Chimie de Clermont-Ferrand, CNRS UMR 6096 Université Clermont Auvergne-Sigma, Clermont-Ferrand, France
| | - Timothy M Vogel
- Environmental Microbial Genomics, CNRS UMR 5005 Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Écully, France
| | - Catherine Larose
- Environmental Microbial Genomics, CNRS UMR 5005 Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Écully, France
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Fifteen Years of Airborne Particulates in Vitro Toxicology in Milano: Lessons and Perspectives Learned. Int J Mol Sci 2020; 21:ijms21072489. [PMID: 32260164 PMCID: PMC7177378 DOI: 10.3390/ijms21072489] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 03/10/2020] [Accepted: 04/01/2020] [Indexed: 12/13/2022] Open
Abstract
Air pollution is one of the world’s leading environmental causes of death. The epidemiological relationship between outdoor air pollution and the onset of health diseases associated with death is now well established. Relevant toxicological proofs are now dissecting the molecular processes that cause inflammation, reactive species generation, and DNA damage. In addition, new data are pointing out the role of airborne particulates in the modulation of genes and microRNAs potentially involved in the onset of human diseases. In the present review we collect the relevant findings on airborne particulates of one of the biggest hot spots of air pollution in Europe (i.e., the Po Valley), in the largest urban area of this region, Milan. The different aerodynamic fractions are discussed separately with a specific focus on fine and ultrafine particles that are now the main focus of several studies. Results are compared with more recent international findings. Possible future perspectives of research are proposed to create a new discussion among scientists working on the toxicological effects of airborne particles.
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32
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Karlsson E, Johansson AM, Ahlinder J, Lundkvist MJ, Singh NJ, Brodin T, Forsman M, Stenberg P. Airborne microbial biodiversity and seasonality in Northern and Southern Sweden. PeerJ 2020; 8:e8424. [PMID: 32025374 PMCID: PMC6991134 DOI: 10.7717/peerj.8424] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Accepted: 12/17/2019] [Indexed: 01/04/2023] Open
Abstract
Microorganisms are essential constituents of ecosystems. To improve our understanding of how various factors shape microbial diversity and composition in nature it is important to study how microorganisms vary in space and time. Factors shaping microbial communities in ground level air have been surveyed in a limited number of studies, indicating that geographic location, season and local climate influence the microbial communities. However, few have surveyed more than one location, at high latitude or continuously over more than a year. We surveyed the airborne microbial communities over two full consecutive years in Kiruna, in the Arctic boreal zone, and Ljungbyhed, in the Southern nemoral zone of Sweden, by using a unique collection of archived air filters. We mapped both geographic and seasonal differences in bacterial and fungal communities and evaluated environmental factors that may contribute to these differences and found that location, season and weather influence the airborne communities. Location had stronger influence on the bacterial community composition compared to season, while location and season had equal influence on the fungal community composition. However, the airborne bacterial and fungal diversity showed overall the same trend over the seasons, regardless of location, with a peak during the warmer parts of the year, except for the fungal seasonal trend in Ljungbyhed, which fluctuated more within season. Interestingly, the diversity and evenness of the airborne communities were generally lower in Ljungbyhed. In addition, both bacterial and fungal communities varied significantly within and between locations, where orders like Rhizobiales, Rhodospirillales and Agaricales dominated in Kiruna, whereas Bacillales, Clostridiales and Sordariales dominated in Ljungbyhed. These differences are a likely reflection of the landscape surrounding the sampling sites where the landscape in Ljungbyhed is more homogenous and predominantly characterized by artificial and agricultural surroundings. Our results further indicate that local landscape, as well as seasonal variation, shapes microbial communities in air.
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Affiliation(s)
- Edvin Karlsson
- Department of Molecular Biology, Umeå University, Umeå, Sweden.,Department of Biological Agents, Division of CBRN Defense and Security, Swedish Defense Research Agency, Umeå, Sweden
| | | | - Jon Ahlinder
- Department of Biological Agents, Division of CBRN Defense and Security, Swedish Defense Research Agency, Umeå, Sweden
| | - Moa J Lundkvist
- Department of Molecular Biology, Umeå University, Umeå, Sweden
| | - Navinder J Singh
- Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Tomas Brodin
- Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Mats Forsman
- Department of Biological Agents, Division of CBRN Defense and Security, Swedish Defense Research Agency, Umeå, Sweden
| | - Per Stenberg
- Department of Biological Agents, Division of CBRN Defense and Security, Swedish Defense Research Agency, Umeå, Sweden.,Department of Ecology and Environmental Sciences, Umeå University, Umeå, Sweden
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33
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Tignat-Perrier R, Dommergue A, Thollot A, Keuschnig C, Magand O, Vogel TM, Larose C. Global airborne microbial communities controlled by surrounding landscapes and wind conditions. Sci Rep 2019; 9:14441. [PMID: 31595018 PMCID: PMC6783533 DOI: 10.1038/s41598-019-51073-4] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 09/23/2019] [Indexed: 11/21/2022] Open
Abstract
The atmosphere is an important route for transporting and disseminating microorganisms over short and long distances. Understanding how microorganisms are distributed in the atmosphere is critical due to their role in public health, meteorology and atmospheric chemistry. In order to determine the dominant processes that structure airborne microbial communities, we investigated the diversity and abundance of both bacteria and fungi from the PM10 particle size (particulate matter of 10 micrometers or less in diameter) as well as particulate matter chemistry and local meteorological characteristics over time at nine different meteorological stations around the world. The bacterial genera Bacillus and Sphingomonas as well as the fungal species Pseudotaeniolina globaosa and Cladophialophora proteae were the most abundant taxa of the dataset, although their relative abundances varied greatly based on sampling site. Bacterial and fungal concentration was the highest at the high-altitude and semi-arid plateau of Namco (China; 3.56 × 106 ± 3.01 × 106 cells/m3) and at the high-altitude and vegetated mountain peak Storm-Peak (Colorado, USA; 8.78 × 104 ± 6.49 × 104 cells/m3), respectively. Surrounding ecosystems, especially within a 50 km perimeter of our sampling stations, were the main contributors to the composition of airborne microbial communities. Temporal stability in the composition of airborne microbial communities was mainly explained by the diversity and evenness of the surrounding landscapes and the wind direction variability over time. Airborne microbial communities appear to be the result of large inputs from nearby sources with possible low and diluted inputs from distant sources.
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Affiliation(s)
- Romie Tignat-Perrier
- Institut des Géosciences de l'Environnement, Univ Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France. .,Environmental Microbial Genomics, Laboratoire Ampère, Ecole Centrale de Lyon, Université de Lyon, Ecully, France.
| | - Aurélien Dommergue
- Institut des Géosciences de l'Environnement, Univ Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Alban Thollot
- Institut des Géosciences de l'Environnement, Univ Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Christoph Keuschnig
- Environmental Microbial Genomics, Laboratoire Ampère, Ecole Centrale de Lyon, Université de Lyon, Ecully, France
| | - Olivier Magand
- Institut des Géosciences de l'Environnement, Univ Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Timothy M Vogel
- Environmental Microbial Genomics, Laboratoire Ampère, Ecole Centrale de Lyon, Université de Lyon, Ecully, France
| | - Catherine Larose
- Environmental Microbial Genomics, Laboratoire Ampère, Ecole Centrale de Lyon, Université de Lyon, Ecully, France
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34
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Fan XY, Gao JF, Pan KL, Li DC, Dai HH, Li X. More obvious air pollution impacts on variations in bacteria than fungi and their co-occurrences with ammonia-oxidizing microorganisms in PM 2.5. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 251:668-680. [PMID: 31108300 DOI: 10.1016/j.envpol.2019.05.004] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 04/15/2019] [Accepted: 05/01/2019] [Indexed: 05/16/2023]
Abstract
Based on long-term systematic sampling, information is currently limited regarding the impacts of different air pollution levels on variations of bacteria, fungi and ammonia-oxidizing microorganisms (AOMs) in fine particulate matter (PM2.5), especially their interactions. Here, PM2.5 samples were weekly collected at different air pollution levels in Beijing, China during one-year period. Microbial composition was profiled using Illumina sequencing, and their interactions were further investigated to reveal the hub genera with network analysis. Diversity of bacteria and fungi showed obvious seasonal variations, and the heavy- or severe-pollution levels mainly affected the diversity and composition of bacteria, but not fungi. While, the community structure of both bacteria and fungi was influenced by the combination of air pollution levels and seasons. The most abundant bacterial genera and some genera with highest abundance in heavy- or severe-pollution days were the hub bacteria in PM2.5. Whereas, only the dominant fungi in light-pollution days in winter were the hub fungi in PM2.5. The complex positive correlations of bacterial or fungal pathogens would aggravate the air pollution effects on human health, despite of their low relative abundances. Moreover, the strong co-occurrence and co-exclusion patterns of bacteria and fungi in PM2.5 were identified. Furthermore, the hub environmental factors (e.g., relative humidity and atmospheric pressure) may play central roles in the distributions of bacteria and fungi, including pathogens. Importantly, AOMs showed significant co-occurrence patterns with the main bacterial and fungal genera and potential pathogens, providing possible microbiological evidences for controlling ammonia emissions to effectively reduce PM2.5 pollution. These results highlighted the more obvious air pollution impacts on bacteria than fungi, and the complex bacterial-fungal interactions, as well as the important roles of AOMs in airborne microbial interactions webs, improving our understanding of bioaerosols in PM2.5.
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Affiliation(s)
- Xiao-Yan Fan
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China
| | - Jing-Feng Gao
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China.
| | - Kai-Ling Pan
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China
| | - Ding-Chang Li
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China
| | - Hui-Hui Dai
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China
| | - Xing Li
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing, 100124, China
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35
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Fan C, Li Y, Liu P, Mu F, Xie Z, Lu R, Qi Y, Wang B, Jin C. Characteristics of airborne opportunistic pathogenic bacteria during autumn and winter in Xi'an, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 672:834-845. [PMID: 30978545 DOI: 10.1016/j.scitotenv.2019.03.412] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2018] [Revised: 03/25/2019] [Accepted: 03/26/2019] [Indexed: 05/23/2023]
Abstract
Bacteria are ubiquitous throughout the earth's lower atmosphere. Bacteria, especially pathogenic bacteria, play an important role in human health. The diversity, composition, and dynamics of airborne bacteria has been widely studied; however, the characteristics of pathogenic bacteria remain poorly understood. In this study, a high throughput sequencing method was used to explore the airborne opportunistic pathogenic bacteria during autumn and winter in Xi'an, China. An aggregated boosted tree (ABT) was developed to determine the relative influence of environmental factors on the proportions of opportunistic pathogenic bacteria. Results showed that significantly more opportunistic pathogenic bacteria were found in winter than in autumn, and more opportunistic pathogenic bacteria were found in fine particulate matters (<2.5 μm) than in PM10 (<10 μm). However, the composition of opportunistic pathogenic bacteria varied in autumn and winter. PM was the main factor affecting the proportions of opportunistic pathogenic bacteria, and air contaminants (PM, sulfur dioxide, nitrogen oxide, carbon monoxide, and ozone) influenced the proportion of opportunistic pathogenic bacteria more than meteorological factors (relative humidity, temperature, and wind speed). Different factors may be responsible for the variances in opportunistic pathogenic bacterial communities in different seasons. This study may provide a reference to support the control of pathogenic bacteria in urban environments during haze events.
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Affiliation(s)
- Chunlan Fan
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Yanpeng Li
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China; Key Laboratory of Subsurface Hydrology and Ecology in Arid Areas, Ministry of Education, Xi'an 710054, PR China.
| | - Pengxia Liu
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Feifei Mu
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Zhengsheng Xie
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Rui Lu
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Yuzhen Qi
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Beibei Wang
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Cheng Jin
- School of Architecture, Chang'an University, Xi'an 710054, China
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36
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Mhuireach GÁ, Betancourt-Román CM, Green JL, Johnson BR. Spatiotemporal Controls on the Urban Aerobiome. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00043] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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37
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Xu C, Wei M, Chen J, Zhu C, Li J, Xu X, Wang W, Zhang Q, Ding A, Kan H, Zhao Z, Mellouki A. Profile of inhalable bacteria in PM 2.5 at Mt. Tai, China: Abundance, community, and influence of air mass trajectories. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 168:110-119. [PMID: 30384158 DOI: 10.1016/j.ecoenv.2018.10.071] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Revised: 10/18/2018] [Accepted: 10/20/2018] [Indexed: 05/27/2023]
Abstract
Bacteria are ubiquitous in the near-surface atmosphere where they constitute an important component of aerosols with the potential to affect climate change, ecosystems, atmospheric process and human health. Limitation in tracking bacterial diversity accurately has thus far prevented the knowledge of airborne bacteria and their pathogenic properties. We performed a comprehensive assessment of bacterial abundance and diverse community in PM2.5 collected at Mt. Tai, via high-throughput sequencing and real-time PCR. The samples exhibited a high microbial biodiversity and complex chemical composition. The dominating populations were gram-negative bacteria including Burkholderia, Delftia, Bradyrhizobium, and Methylobacterium. The PM mass concentration, chemical composition, bacterial concentration and community structure varied under the influence of different air-mass trajectories. The highest mass concentration of PM2.5 (61 μg m-3) and major chemical components were recorded during periods when marine southeasterly air masses were dominant. The local terrestrial air masses from Shandong peninsula and its adjacent areas harbored highest bacterial concentration loading (602 cells m-3) and more potential pathogens at the site. In contrast, samples influenced by the long-distance air flow from Siberia and Outer Mongolia were found to have a highest richness and diversity as an average, which was also marked by the increase of dust-associated bacteria (Brevibacillus and Staphylococcus). The primary research may serve as an important reference for the environmental microbiologist, health workers, and city planners.
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Affiliation(s)
- Caihong Xu
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP, Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Min Wei
- Environment Research Institute, School of Environmental Science and Engineering, Shandong University, Ji'nan 250100, China
| | - Jianmin Chen
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP, Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China; College of Geography and Environment, Shandong Normal University, Jinan 250100, China; Institute for Climate and Global Change Research, School of Atmospheric Sciences, Nanjing University, Nanjing 210023, Jiangsu, China; School of Public Health, Key Lab of Public Health Safety of the Ministry of Education and NHC Key Laboratory of Health Technology Assessment, Fudan University, Shanghai 200032, China.
| | - Chao Zhu
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP, Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Jiarong Li
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP, Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Xianmang Xu
- College of Geography and Environment, Shandong Normal University, Jinan 250100, China
| | - Wenxing Wang
- College of Geography and Environment, Shandong Normal University, Jinan 250100, China
| | - Qingzhu Zhang
- College of Geography and Environment, Shandong Normal University, Jinan 250100, China
| | - Aijun Ding
- Institute for Climate and Global Change Research, School of Atmospheric Sciences, Nanjing University, Nanjing 210023, Jiangsu, China
| | - Haidong Kan
- School of Public Health, Key Lab of Public Health Safety of the Ministry of Education and NHC Key Laboratory of Health Technology Assessment, Fudan University, Shanghai 200032, China
| | - Zhuohui Zhao
- School of Public Health, Key Lab of Public Health Safety of the Ministry of Education and NHC Key Laboratory of Health Technology Assessment, Fudan University, Shanghai 200032, China
| | - Abdelwahid Mellouki
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP, Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China; College of Geography and Environment, Shandong Normal University, Jinan 250100, China; Institut de Combustion, Aérothermique, Réactivité et Environnement, CNRS, 45071 Orléans Cedex 02, France
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38
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Xie Z, Fan C, Lu R, Liu P, Wang B, Du S, Jin C, Deng S, Li Y. Characteristics of ambient bioaerosols during haze episodes in China: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 243:1930-1942. [PMID: 30237031 DOI: 10.1016/j.envpol.2018.09.051] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 08/21/2018] [Accepted: 09/07/2018] [Indexed: 05/22/2023]
Abstract
Frequent low visibility, haze pollution caused by heavy fine particulate matter (PM2.5) loading, has been entailing significant environmental issues and health risks in China since 2013. A substantial fraction of bioaerosols was observed in PM (1.5-15%) during haze periods with intensive pollution. However, systematic and consistent results of the variations of bioaerosol characteristics during haze pollution are lacking. The role of bioaerosols in air quality and interaction with environment conditions are not yet well characterized. The present article provides an overview of the state of bioaerosol research during haze episodes based on numerous recent studies over the past decade, focusing on concentration, size distribution, community structure, and influence factors. Examples of insightful results highlighted the characteristics of bioaerosols at different air pollution levels and their pollution effects. We summarize the influences of meteorological and environmental factors on the distribution of bioaerosols. Further studies on bioaerosols, applying standardized sampling and identification criteria and investigating the influence of mechanisms of environmental or pollution factors on bioaerosols as well as the sources of bioaerosols are proposed.
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Affiliation(s)
- Zhengsheng Xie
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Chunlan Fan
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Rui Lu
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Pengxia Liu
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Beibei Wang
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Shengli Du
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China
| | - Cheng Jin
- School of Architecture, Chang'an University, Xi'an, 710061, China
| | - Shunxi Deng
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China; Key Laboratory of Subsurface Hydrology and Ecological Effect in Arid Region of Ministry of Education, Xi'an, 710054, China
| | - Yanpeng Li
- School of Environmental Science and Engineering, Chang'an University, Xi'an 710054, China; Key Laboratory of Subsurface Hydrology and Ecological Effect in Arid Region of Ministry of Education, Xi'an, 710054, China; Shaanxi Key Laboratory of Land Consolidation, Xi'an 710054, China.
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39
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Zhai Y, Li X, Wang T, Wang B, Li C, Zeng G. A review on airborne microorganisms in particulate matters: Composition, characteristics and influence factors. ENVIRONMENT INTERNATIONAL 2018; 113:74-90. [PMID: 29421410 DOI: 10.1016/j.envint.2018.01.007] [Citation(s) in RCA: 113] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 01/08/2018] [Accepted: 01/12/2018] [Indexed: 05/21/2023]
Abstract
Airborne microorganisms (AM), vital components of particulate matters (PM), are widespread in the atmosphere. Since some AM have pathogenicity, they can lead to a wide range of diseases in human and other organisms, meanwhile, some AM act as cloud condensation nuclei and ice nuclei which let them can affect the climate. The inherent characteristics of AM play critical roles in many aspects which, in turn, can decide microbial traits. The uncertain factors bring various influences on AM, which make it difficult to elaborate effect trends as whole. Because of the potential roles of AM in environment and potent effects of factors on AM, detailed knowledge of them is of primary significance. This review highlights the issues of composition and characteristics of AM with size-distribution, species diversity, variation and so on, and summarizes the main factors which affect airborne microbial features. This general information is a knowledge base for further thorough researches of AM and relevant aspects. Besides, current knowledge gaps and new perspectives are offered to roundly understand the impacts and application of AM in nature and human health.
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Affiliation(s)
- Yunbo Zhai
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China.
| | - Xue Li
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Tengfei Wang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Bei Wang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Caiting Li
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
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