Role of hemoglobin in hemoglobin-based remediation of the crude oil-contaminated soil

Unraveling the Positive Effect of Soil Moisture on the Bioaugmentation of Petroleum-Contaminated Soil Using Bioinformatics

Petroleum contamination is a severe threat to the soil environment. Previous studies have demonstrated that petroleum degradation efficiency is promoted by enhancing soil moisture content (MC). However, the effects of MC on soil microbial ecological functions during bioremediation remain unclear. Here, we investigated the impacts of 5% and 15% of moisture contents on petroleum degradation, soil microbial structures and functions, and the related genes using high-throughput sequencing and gene function prediction. Results indicated that petroleum biodegradation efficiency was increased by 8.06% in the soils with 15% MC when compared to that with 5% of MC. The complexity and stability of soil microbial community structures with 15% MC were higher than those in the soils with 5% MC when hydrocarbon-degrading bacterial flora (HDBF) were inoculated into the soils. Fifteen percent of moisture content strengthened the interaction of the bacterial community network and reduced the loss of some key bacteria species including Mycobacterium, Sphingomonas, and Gemmatimonas. Some downregulated gene pathways relating to bioaugmentation were enhanced in the soils with 15% MC. The results suggested that the dynamic balances of microbial communities and the metabolic interactions by 15% MC treatment are the driving forces for the enhancement of bioremediation in petroleum-contaminated soil.

Identification and characterization of proteins, lipids, and metabolites in two organic fertilizer products derived from different nutrient sources

The biochemical composition of organic fertilizers largely determines their nutrient supply characteristics following soil application as well as their potential impact on soil microbial communities. Yet, limited information is available regarding the biochemical composition of organic fertilizers derived from different nutrient sources. Here, we qualitatively analyzed the presence and abundance of proteins, lipids, and metabolites in a liquid fish fertilizer (LFF) product and a type of granular organic fertilizer (GOF) commonly used in organic vegetable production, using liquid chromatography-tandem mass spectrometry (LC-MS/MS). Our results suggest that the presence and abundance of proteins, lipids, and metabolites differ greatly between GOF and LFF. The qualitative analysis shows LFF as a rich source of metabolites, while complex proteins and long-chain saturated fatty acids are dominant in GOF. The degree of biochemical composition complexity may help explain the varying impacts of different types of organic fertilizers on nutrient availability, soil health, and environmental quality.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1186/s13765-021-00625-2.

Bioremediation of polycyclic aromatic hydrocarbons contaminated soil under the superimposed electric field condition

An innovative superimposed electric field (SEF) was designed with the aim to achieve uniform removal of polycyclic aromatic hydrocarbons (PAHs) in soil. Also the influence of SEF on the bioremediation efficiency of PAHs was investigated in compared with the common electric field (CEF). Five experiments were conducted in this study, namely EK-CEF (applied CEF), EKB-CEF (CEF enhanced bioremediation), EK-SEF (applied SEF), EKB-SEF (SEF enhanced bioremediation), and Bio (bioremediation). The results indicated that electric field with periodically reversed polarity could effectively prevent the occurrence of large changes in soil pH, temperature, and electric current. The electric field intensity of SEF was concentrated in the range of 0.5-1.5 V/cm, and the difference between the maximum and minimum PAHs removal percentage in EK-SEF was just 5.4%, in comparison to 14.8% in EK-CEF. The bioremediation promoting effect did not show significant difference between SEF and CEF. Compared to Bio, the removal percentages of the 5-ring and 6-ring PAHs attributed to the degrading bacteria were much higher in EKB-SEF and EKB-CEF. Moreover, the microbial number increased with the distance away from electrodes, and the microbial community changed correspondingly. All these would be resulted in differences removal efficiencies among different PAHs components. Despite its intrinsic advantages, the influence of SEF on soil physicochemical and biological properties needs further study.

Changes of sensitive microbial community in oil polluted soil in the coastal area in Shandong, China for ecorestoration

Oil spills have an important threat to the ecological security and human health, for example the important oil field and coastal wetland Yellow River Delta is facing the dual problems of oil pollution and salinization. Therefore, the purpose of this study was to analyze the changes of soil microbial community and physicochemical properties, including pH value, total organic carbon (TOC), total petroleum hydrocarbons (TPHs) and electrical conductivity under the combined effect of petroleum and salinization. The soil properties results showed that the petroleum addition promoted the increase of TOC from 2.31 ± 0.59 mg/kg to 7.04 ± 0.42 mg/kg (r > 0.95, P < 0.1, R² > 0.9), TPHs from 9.18 ± 0.07 mg/kg to 33.09 ± 4.61 mg/kg (r > 0.9, P < 0.05, R² > 0.9) significantly. At the initial stage hydrocarbons caused the increase of soil salt content and the decrease of pH. Salt addition increased soil salt from 2.46 ± 0.13 g/kg to 15.12 ± 0.21 g/kg (r > 0.8, P > 0.1, R² > 0.95), but it had no direct effect on other soil properties. It was found that the nitrate reducing bacteria Halorhodospiraceae with potential petroleum degradation ability and the anaerobic bacteria Lactobacilliceae appeared after adding crude oil. The salt tolerant bacteria Halobacilli and the stone oil degrading bacteria Immundisolidcharacter appeared in the high salt and low salt environments respectively. The aerobic bacteria Acidimicrobiaceae, Hyphomonas and the nonoil efficient Peptoccaceae disappeared in the process of salinization and oil pollution. Lactobacilliceae can ferment carbohydrate, fatty acid or ester to produce lactic acid, acetic acid and fumaric acid to provide metabolic substrate for other microorganisms. The above results showed that sensitive microorganisms were easy to be affected by pollution to indicate soil conditions, while tolerant microorganisms could potentially use oil to achieve bioremediation. The soil properties and microbial results provided data support and theoretical basis for further understanding the pollution mechanism of oil and salinization combined stress on soil.

Assessment of the Lowland Bog Biomass for Ex Situ Remediation of Petroleum-Contaminated Soils

Bog petroleum-contaminated soils have been remediated ex situ in conditions close to natural ones. It was found that during the first 30 days in natural conditions, the decomposition of total petroleum hydrocarbons (TPH) was 30 ± 5%. On the 60th and 90th days, the process of TPH decomposition was 45 ± 5% and 60 ± 5%, respectively. The effect of various stimulant supplements was negligible. For the entire observed period, bog soil showed a very high self-cleaning potential with pollution concentration of 5 g of petroleum per 100 g of soil sample. Such diagnostic indicators of soil condition as urease and cellulase activities turned out to be most sensitive in the bog soil. The introduction of mineral fertilizers to stimulate the TPH decomposition increased the activity of urease in comparison with the background soil. On the other hand, the nonionic surfactant acted as an inhibitor of microorganisms involved in nitrogen metabolism, even in the presence of mineral fertilizers. The introduction of mineral fertilizers to petroleum-polluted bog soil stimulated the cellulases activity, while surfactants suppressed them in the early stages. The simultaneous introduction of surfactants and fertilizers kept the cellulase activity at the background level. It is concluded that in the case of petroleum pollution of infertile soils, the introduction of the upper layers of the phytomass of lowland bogs by providing looseness and long-term supply of nutrients from the dying parts of the moss will accelerate the self-cleaning processes.

Sequential biowashing-biopile processes for remediation of crude oil contaminated soil in Kuwait

The application of biological processes for remediation of the aged crude oil-contaminated soil of Kuwait can be an inefficient way, thus, this study developed 20 d-sequential biowashing and biopile processes where the biowashing step uses an enrichment culture of the indigenous soil bacterial community and the biopile step includes hemoglobin-catalyzed oxidation (HCO). The residual total petroleum hydrocarbons (TPH) concentrations and CO₂ generation were measured to determine the removal efficiency, and the bacterial community changes were studied to investigate the effect of the sequential processes on the soil indigenous bacterial community. The enrichment culture grown on hemoglobin showed an increased surface activity, and this promoted desorption and emulsification of crude oil from the soil sample in the biowashing step resulting in 75% TPH removal. Potential surfactant-producing bacterial species were observed in the soil sample after biowashing. The HCO in the beginning of the biopile step removed 21% of the residual TPH, and further TPH removal was observed with a longer biopile period. Overall, the sequential biowashing and biopile processes removed 86% TPH. The results show that the developed sequential biowashing and biopile processes can be used to efficiently remediate the aged crude oil-contaminated soil of Kuwait.