Phytoremediation: Metal decontamination of soils after the sequential forestation of former opencast coal land

Critical steps in the restoration of coal mine soils: Microbial-accelerated soil reconstruction

Soil reconstruction is a critical step in the restoration of environments affected by mining activities. This paper provides a comprehensive review of the significant role that microbial processes play in expediting soil structure formation, particularly within the context of mining environment restoration. Coal gangue and flotation tailings, despite their low carbon content and large production volumes, present potential substrates for soil reclamation. These coal-based solid waste materials can be utilized as substrates to produce high-quality soil and serve as an essential carbon source to enhance poor soil conditions. However, extracting active organic carbon components from coal-based solid waste presents a significant challenge due to its complex mineral composition. This article offers a thorough review of the soilization process of coal-based solid waste under the influence of microorganisms. It begins by briefly introducing the primary role of in situ microbial remediation technology in the soilization process. It then elaborates on various improvements to soil structure under the influence of microorganisms, including the enhancement of soil aggregate structure and soil nutrients. The article concludes with future recommendations aimed at improving the efficiency of soil reconstruction and restoration, reducing environmental risks, and promoting its application in complex environments. This will provide both theoretical and practical support for more effective environmental restoration strategies.

How tree species have modified the potentially toxic elements distributed in the developed soil-plant system in a post-fire site in highly industrialized region

The biogeochemical cycles of trace elements are changed by fire as a result of the mineralization of organic matter. Monitoring the accumulation of trace elements in both the environment and the tree biomass during the post-fire (PF) forest ecosystem regeneration process is important for tree species selection for reforestation in ecosystems under anthropogenic pressure. We analyzed the soil concentrations of different groups of potentially toxic elements (PTEs), including beneficial (Al), toxic (Cd, Cr, Pb), and microelements (Cu, Mn, Ni, Zn), and their bioaccumulation in the tree species (Pinus sylvestris, Betula pendula, Alnus glutinosa) biomass introduced after a fire in a forest weakened by long-term emissions of industrial pollutants. The results indicated no direct threat from the PTEs tested at the PF site. The tree species introduced 30 years ago may have modified the biogeochemical cycles of the PTEs through different strategies of bioaccumulation in the belowground and aboveground biomass. Alder had relatively high Al concentrations in the roots and a low translocation factor (TF). Pine and birch had lower Al concentrations in the roots and higher TFs. Foliage concentrations and the TF of Cd increased from alder to pine to birch. However, the highest concentration and bioaccumulation factor of Cd was found in the alder roots. The concentrations of Cr in the foliage and the Cr TFs in the studied species increased from pine to birch to alder. Higher concentrations of Cu and Ni were found in the foliage of birch and alder than of pine. Among the species, birch also had the highest Pb and Zn concentrations in the roots and foliage. We found that different tree species had different patterns of PTE phytostabilization and ways they incorporated these elements into the biological cycle, and these patterns were not dependent on fire disturbance. This suggests that similar patterns might also occur in more polluted soils. Therefore, species-dependent bioaccumulation patterns could also be used to design phytostabilization and remediation treatments for polluted sites under industrial pressure.

Assessing HCH isomer uptake in Alnus glutinosa: implications for phytoremediation and microbial response

Although the pesticide hexachlorocyclohexane (HCH) and its isomers have long been banned, their presence in the environment is still reported worldwide. In this study, we investigated the bioaccumulation potential of α, β, and δ hexachlorocyclohexane (HCH) isomers in black alder saplings (Alnus glutinosa) to assess their environmental impact. Each isomer, at a concentration of 50 mg/kg, was individually mixed with soil, and triplicate setups, including a control without HCH, were monitored for three months with access to water. Gas chromatography-mass spectrometry revealed the highest concentrations of HCH isomers in roots, decreasing towards branches and leaves, with δ-HCH exhibiting the highest uptake (roots-14.7 µg/g, trunk-7.2 µg/g, branches-1.53 µg/g, leaves-1.88 µg/g). Interestingly, α-HCH was detected in high concentrations in β-HCH polluted soil. Phytohormone analysis indicated altered cytokinin, jasmonate, abscisate, and gibberellin levels in A. glutinosa in response to HCH contamination. In addition, amplicon 16S rRNA sequencing was used to study the rhizosphere and soil microbial community. While rhizosphere microbial populations were generally similar in all HCH isomer samples, Pseudomonas spp. decreased across all HCH-amended samples, and Tomentella dominated in β-HCH and control rhizosphere samples but was lowest in δ-HCH samples.

Draft genome sequences of five Mycobacterium strains, isolated from Alnus glutinosa root nodules

Mycobacterium is a clinically relevant genus of bacteria, with this paper reporting draft genomes of five Mycobacterium strains derived from Alnus glutinosa root nodules. The genome sizes of the isolates ranged from 6.1 to 6.9 Mbp, composed of 22-59 contigs. The N50 values ranged from 303,875 to 865,751 bp, presenting a GC% of 66.07%-66.96%.

Draft genome sequence of Streptomyces poriferorum RTGN2, a bacterial endophyte isolated from Alnus glutinosa root nodules

Herein is reported the draft genome sequence of Streptomyces poriferum RTGN2, a bacterial isolate of Alnus glutinosa root nodules, collected from Saltwell Park, Gateshead, United Kingdom. The assembly is 9.5 Mbp in size, composed of 187 contigs, with a N50 of 189,630 bp, presenting a GC content of 71.2%.

Draft genome sequence of Amycolatopsis camponoti RTGN1, a bacterial endophyte isolated from Alnus glutinosa root nodules

Here, we report the draft genome sequence of Amycolatopsis camponoti RTGN1, a bacterial endophyte of Alnus glutinosa root nodules, collected from Saltwell Park, United Kingdom. The genome is 11.9 Mbp in size, composed of 147 contigs, with an N50 of 179,211 bp and presenting a GC content of 70.9%.

Clean-Up of Heavy Metals from Contaminated Soil by Phytoremediation: A Multidisciplinary and Eco-Friendly Approach

Pollution from heavy metals is one of the significant environmental concerns facing the world today. Human activities, such as mining, farming, and manufacturing plant operations, can allow them access to the environment. Heavy metals polluting soil can harm crops, change the food chain, and endanger human health. Thus, the overarching goal for humans and the environment should be the avoidance of soil contamination by heavy metals. Heavy metals persistently present in the soil can be absorbed by plant tissues, enter the biosphere, and accumulate in the trophic levels of the food chain. The removal of heavy metals from contaminated soil can be accomplished using various physical, synthetic, and natural remediation techniques (both in situ and ex situ). The most controllable (affordable and eco-friendly) method among these is phytoremediation. The removal of heavy metal defilements can be accomplished using phytoremediation techniques, including phytoextraction, phytovolatilization, phytostabilization, and phytofiltration. The bioavailability of heavy metals in soil and the biomass of plants are the two main factors affecting how effectively phytoremediation works. The focus in phytoremediation and phytomining is on new metal hyperaccumulators with high efficiency. Subsequently, this study comprehensively examines different frameworks and biotechnological techniques available for eliminating heavy metals according to environmental guidelines, underscoring the difficulties and limitations of phytoremediation and its potential application in the clean-up of other harmful pollutants. Additionally, we share in-depth experience of safe removing the plants used in phytoremediation-a factor frequently overlooked when choosing plants to remove heavy metals in contaminated conditions.

Effects of Tree Composition and Soil Depth on Structure and Functionality of Belowground Microbial Communities in Temperate European Forests

Depending on their tree species composition, forests recruit different soil microbial communities. Likewise, the vertical nutrient gradient along soil profiles impacts these communities and their activities. In forest soils, bacteria and fungi commonly compete, coexist, and interact, which is challenging for understanding the complex mechanisms behind microbial structuring. Using amplicon sequencing, we analyzed bacterial and fungal diversity in relation to forest composition and soil depth. Moreover, employing random forest models, we identified microbial indicator taxa of forest plots composed of either deciduous or evergreen trees, or their mixtures, as well as of three soil depths. We expected that forest composition and soil depth affect bacterial and fungal diversity and community structure differently. Indeed, relative abundances of microbial communities changed more across soil depths than in relation to forest composition. The microbial Shannon diversity was particularly affected by soil depth and by the proportion of evergreen trees. Our results also reflected that bacterial communities are primarily shaped by soil depth, while fungi were influenced by forest tree species composition. An increasing proportion of evergreen trees did not provoke differences in main bacterial metabolic functions, e.g., carbon fixation, degradation, or photosynthesis. However, significant responses related to specialized bacterial metabolisms were detected. Saprotrophic, arbuscular mycorrhizal, and plant pathogenic fungi were related to the proportion of evergreen trees, particularly in topsoil. Prominent microbial indicator taxa in the deciduous forests were characterized to be r-strategists, whereas K-strategists dominated evergreen plots. Considering simultaneously forest composition and soil depth to unravel differences in microbial communities, metabolic pathways and functional guilds have the potential to enlighten mechanisms that maintain forest soil functionality and provide resistance against disturbances.

Speciation Distribution and Influencing Factors of Heavy Metals in Rhizosphere Soil of Miscanthus Floridulus in the Tailing Reservoir Area of Dabaoshan Iron Polymetallic Mine in Northern Guangdong

Through field investigation and experimental analysis, the forms, contents and distribution of heavy metals (Zn, Pb, Cu, Cd, Ni, Cr) in rhizosphere and non-rhizosphere soils of Miscanthus floridulus growing everywhere in Tielongwei mine pond (sample plot 1), Caoduikeng tailings pond (sample plot 2), Donghua tailings pond (sample plot 3) and Small tailings pond (sample plot 4) in Dabaoshan, Guangdong Province were studied. The results showed that the main forms and distributions of heavy metals in rhizosphere and non-rhizosphere soils are basically the same, which shows that the mineral content accounts for most of the total amount of heavy metals, while the exchange content is low. Compared with non-rhizosphere soil, the proportion of exchangeable and organic heavy metals in rhizosphere soil increased significantly, in which the proportion of organic-bound Cu increased by 53.25%, the proportion of organic-bound Cd and Pb increased by more than 17%, and the proportion of Zn increased by 5.67%. At the same time, the contents of carbonate-bound and iron manganese oxide-bound decreased. Statistical analyses showed that the morphological distribution of Zn, Pb, Cu, Cd, Ni and Cr in rhizosphere soil was closely related to soil pH value, organic matter content, plant growth and other factors. The results of this study provided a basis for the restoration of heavy metal-contaminated sites by Miscanthus.

Suitability of Selected Plant Species for Phytoremediation: A Case Study of a Coal Combustion Ash Landfill

Coal bottom and fly ash waste continue to be generated as a result of energy production from coal in the amount of about 750 million tonnes a year globally. Coal is the main source of energy in Poland, and about 338 million tonnes of combustion waste has already been landfilled. The aim of the research was to identify factors determining the Cd, Pb, Zn and Cu phytostabilisation by vegetation growing on a coal combustion waste landfill. Soil and shoots of the following plants were analysed: wood small-reed, European goldenrod, common reed; silver birch, black locust, European aspen and common oak. The influence of the location where the plants grew and the influence of the interaction between the two factors (species and location) were significant. The tree species were more effective at accumulating heavy metals than the herbaceous plants. European aspen had the highest Bioaccumulation Factor (BCF) for cadmium and zinc. A high capacity to accumulate these elements was also demonstrated by silver birch, and in the case of cadmium, by common oak. Accumulation of both lead and copper was low in all plants. The Translocation Factors (TF) indicated that the heavy metals were accumulated mainly in the roots. European aspen, silver birch and European goldenrod were shown to be most suitable for stabilization of the metals analysed in the research.

Metal Accumulation and Biomass Production in Young Afforestations Established on Soil Contaminated by Heavy Metals

The restoration of forest ecosystems on metal-contaminated sites can be achieved whilst producing valuable plant biomass. Here, we investigated the metal accumulation and biomass production of young afforestations on contaminated plots by simulating brownfield site conditions. On 16 3-m² plots, the 15 cm topsoil was experimentally contaminated with Zn/Cu/Pb/Cd = 2854/588/103/9.2 mg kg⁻¹ using smelter filter dust, while 16 uncontaminated plots (Zn/Cu/Pb/Cd = 97/28/37/< 1) were used as controls. Both the calcareous (pH 7.4) and acidic (pH 4.2) subsoils remained uncontaminated. The afforestations consisted of groups of conifers, deciduous trees, and understorey plants. During the four years of cultivation, 2254/86/0.35/10 mg m⁻² Zn/Cu/Pb/Cd were extracted from the contaminated soils and transferred to the aboveground parts of the plants (1279/72/0.06/5.5 mg m⁻² in the controls). These extractions represented 3/2/3% of the soluble soil Zn/Cu/Cd fractions. The conifers showed 4–8 times lower root-to-shoot translocation of Cu and Zn than the deciduous trees. The contamination did not affect the biomass of the understorey plants and reduced that of the trees by 23% at most. Hence, we conclude that the afforestation of brown field sites with local tree species is an interesting option for their reclamation from an ecological as well as economic perspective.

Arsenic Remediation through Sustainable Phytoremediation Approaches

Arsenic contamination of the environment is a serious problem threatening the health of millions of people exposed to arsenic (As) via drinking water and crops grown in contaminated areas. The remediation of As-contaminated soil and water bodies needs to be sustainable, low-cost and feasible to apply in the most affected low-to-middle income countries, like India and Bangladesh. Phytoremediation is an aesthetically appreciable and successful approach that can be used for As decontamination with use of the best approach(es) and the most promising plant(s). However, phytoremediation lacks the required speed and sometimes the stress caused by As could diminish plants’ potential for remediation. To tackle these demerits, we need augment plants’ potential with appropriate technological methods including microbial and nanoparticles applications and genetic modification of plants to alleviate the As stress and enhance As accumulation in phytoremediator plants. The present review discusses the As phytoremediation prospects of soil and water bodies and the usefulness of various plant systems in terms of high biomass, high As accumulation, bioenergy potential, and economic utility. The potential and prospects of assisted phytoremediation approaches are also presented.

Effect of natural geotextile on the cotransport of heavy metals (Cu2+, Pb2+, and Zn2+) and kaolinite particles

A cotransport study of heavy metals and kaolinite particles in sand column with and without flax geotextiles was carried out. The objectives were to evaluate the potential role of kaolinite in heavy metals transfer and to analyse the influence of flax geotextiles on the transfer of these pollutants. The adsorption rates of heavy metals on the kaolinite particles were, respectively, 53%, 65% and 25% for copper, lead, and zinc. The injection of kaolinite with heavy metals resulted in a significant decrease in the retention efficiency of copper and lead in the filter. The presence of kaolinite in the injected solution has virtually no influence on the effectiveness of zinc fixation in the filter. The retention of heavy metals is in the order of Zn > Cu > Pb with a significant drop of retention efficiency of 34% for copper, 67% for lead, and less than 1% for zinc. The presence of kaolinite in the injected solution reversed the retention order of heavy metals when metals solution was injected alone. Flax geotextiles increase the ability of the filter to retain soluble and attached heavy metals. It improves the sand retention capacity and it retains soluble and attached metals in its structure.

Metagenomic analysis reveals mechanisms of atrazine biodegradation promoted by tree species

Metagenomics has provided the discovery of genes and metabolic pathways involved in the degradation of xenobiotics. Some microorganisms can metabolize these compounds, potentiating phytoremediation in association with plant. This study aimed to study the metagenome and the occurrence of atrazine degradation genes in rhizospheric soils of the phytoremediation species Inga striata and Caesalphinea ferrea. The genera of microorganisms predominant in the rhizospheric soils of I. striata and C. ferrea were Mycobacterium, Conexibacter, Bradyrhizobium, Solirubrobacter, Rhodoplanes, Streptomyces, Geothrix, Gaiella, Nitrospira, and Haliangium. The atzD, atzE, and atzF genes were detected in the rhizospheric soils of I. striata and atzE and atzF in the rhizospheric soils of C. ferrea. The rhizodegradation by both tree species accelerates the degradation of atrazine residues, eliminating toxic effects on plants highly sensitive to this herbicide. This is the first report for the species Agrobacterium rhizogenes and Candidatus Muproteobacteria bacterium and Micromonospora genera as atrazine degraders.

Successful Ecological Regeneration of Opencast Coal Mine Spoils through Forestation: From Cradle to Grove

The reclamation of surface (opencast) coal mines is not always successful; there remains a legacy of degraded land that burdens local communities. This article evaluates a community-oriented, low-cost means of geoecological regeneration, the “Cradle for Nature” strategy, which uses mosaic tree planting to foster positive natural ecological processes. Results show that, while the autocompaction of minestones quickly raises soil densities to levels hostile to plant growth, forestation helps moderate soil densities. Weathering concentrates metals in minestones, but 14 years of forestation reduced the loadings of five metals by 35–52%. Twenty years of forestation doubled soil organic carbon to >7%; increased bacilli from 7% to 46%; actinomycetes from 10% to 26%; and soil microbe counts 12–15 times, especially in tree plantings treated with fertiliser. Soils under trees also supported a significantly greater earthworm biomass than under grass but, while open-canopy plantings had increased ground flora biodiversity, closed-canopy plantings had lower diversity and biomass. Following closure to grazing, ground biomass increased sevenfold. Young trees act as bird perches and significantly increase seed fall. Small mammal biomass and biodiversity increases after tree planting and higher predators appear. Varteg’s constructed forest provides an effective “cradle” for an emergent geoecological system and its habitat mosaic maximises biodiversity.

A mechanism for efficient cadmium phytoremediation and high bioethanol production by combined mild chemical pretreatments with desirable rapeseed stalks

Cadmium (Cd) is one of the most hazardous trace metals, and rapeseed is a major oil crop over the world with considerable lignocellulose residues applicable for trace metal phytoremediation and cellulosic ethanol co-production. In this study, we examined that two distinct rapeseed cultivars could accumulate Cd at 72.48 and 43.70 ug/g dry stalk, being the highest Cd accumulation among all major agricultural food crops as previously reported. The Cd accumulation significantly increased pectin deposition as a major factor for trace metal association with lignocellulose. Meanwhile, the Cd-accumulated rapeseed stalks contained much reduced wall polymers (hemicellulose, lignin) and cellulose degree of polymerization, leading to improved lignocellulose enzymatic hydrolysis. Notably, three optimal chemical pretreatments were performed for enhanced biomass enzymatic saccharification and bioethanol production by significantly increasing cellulose accessibility and lignocellulose porosity, along with a complete Cd release for collection and recycling. Hence, this study proposed a mechanism model interpreting why rapeseed stalks are able to accumulate much Cd and how the Cd-accumulated stalks are of enhanced biomass saccharification. It has also provided a powerful technology for both cost-effective Cd phytoremediation and value-added bioethanol co-production with minimum waste release.