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Wang Y, Yang X, Harkes P, van Steenbrugge JJM, Xu M, Geissen V. Soil microeukaryotic communities and phosphorus-cycling microorganisms respond to chloropicrin fumigation and azoxystrobin application. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:172871. [PMID: 38697530 DOI: 10.1016/j.scitotenv.2024.172871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 03/23/2024] [Accepted: 04/27/2024] [Indexed: 05/05/2024]
Abstract
Fumigants and fungicides are effective at controlling soil-borne pathogens but might also adversely affect soil beneficial microbes, such as soil phosphorus (P) solubilizing microbes, further altering nutrient cycling processes. Therefore, this study investigated the effects of the fumigant chloropicrin (CP) and the fungicide azoxystrobin (AZO) on soil microeukaryotes and P-cycling related soil bacteria through a greenhouse experiment. Soil microeukaryotic communities and bacterial communities containing two phosphomonoesterase encoding genes (phoC and phoD) were analysed using high-throughput sequencing methods. Results showed that, when applied at the field recommended application dosage, the fungicide AZO had no significant influence on the community structure of soil microeukaryotes and phoD-containing bacteria. However, in CP-fumigated soils, the soil microeukaryotic community composition changed from fungi-dominated to protist-dominated. CP fumigation significantly decreased the total phoC/phoD gene copy number but increased the relative abundance of some phoC/phoD-containing bacteria (such as Sinorhizobium and Streptomyces), which are significantly positively correlated to available P compositions in soil. The structural equation model (SEM) confirmed that CP fumigation could affect soil available P content directly by altering phoC-/phoD-containing bacteria, or indirectly by affecting phoC/phoD gene abundance and acid/alkaline phosphatases activity in soil. The inconsistent changes in phoC/phoD-containing bacteria, phoC/phoD gene number, and the phosphomonoesterase activities indicated that enzyme secretion may not be the only way for P solubilizing soil microorganisms to regulate P availability after soil fumigation. The outcome of this study can provide theoretical support for the design of soil beneficial microorganism recovery strategies and the regulation of phosphate fertilizer after soil fumigation.
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Affiliation(s)
- Yan Wang
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA Wageningen, the Netherlands
| | - Xiaomei Yang
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA Wageningen, the Netherlands; College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Paula Harkes
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA Wageningen, the Netherlands
| | - Joris J M van Steenbrugge
- Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands
| | - Minggang Xu
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Institute of Eco-environment and Industrial Technology, Shanxi Agricultural University, Shanxi Province Key Laboratory of Soil Environment and Nutrient Resources, Taiyuan 030031, China.
| | - Violette Geissen
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA Wageningen, the Netherlands
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Wang Y, Tang DWS. Soil chemical fumigation alters soil phosphorus cycling: effects and potential mechanisms. FRONTIERS IN PLANT SCIENCE 2024; 15:1289270. [PMID: 38855465 PMCID: PMC11157047 DOI: 10.3389/fpls.2024.1289270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 05/13/2024] [Indexed: 06/11/2024]
Abstract
Soil chemical fumigation is an effective and popular method to increase agricultural productivity. However, the broad-spectrum bioactivity of fumigants causes harm to soil beneficial microorganisms involved in the soil phosphorous cycle, such as soil phosphorus solubilizing microorganisms (PSMs). We review the effects of soil chemical fumigation on soil phosphorus cycling, and the potential underlying mechanisms that ultimately lead to altered phosphorus availability for crops. These complex processes involve the highly diverse PSM community and a plethora of soil phosphorus forms. We discuss phosphatizing amendments aimed at counteracting the possible negative effects of fumigation on phosphorus availability, phosphorus use efficiency, and crop yields. We also emphasize distinguishing between the effects on soil phosphorus cycling caused by the chemical fumigants, and those caused by the fumigation process (e.g. plastic mulching). These are typically conflated in the literature; distinguishing them is critical for identifying appropriate amendments to remediate possible post-fumigation soil phosphorus deficiencies.
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Affiliation(s)
| | - Darrell W. S. Tang
- Soil Physics and Land Management Group, Wageningen University, Wageningen, Netherlands
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Castellano-Hinojosa A, Karlsen-Ayala E, Boyd NS, Strauss SL. Impact of repeated fumigant applications on soil properties, crop yield, and microbial communities in a plastic-mulched tomato production system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 919:170659. [PMID: 38325480 DOI: 10.1016/j.scitotenv.2024.170659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 01/31/2024] [Accepted: 02/01/2024] [Indexed: 02/09/2024]
Abstract
Pre-plant soil fumigation is widely applied to control nematodes, soil-borne fungal pathogens, and weeds in vegetable crops. However, most of the research evaluating the effect of fumigants on crop yield and soil microbial communities has been done on single compounds despite growers mainly applying fumigant combinations. We studied the effect of different fumigant combinations (chloropicrin, 1,3-dichloropropene, and metam potassium) on soil properties, crop yield, and the soil bacterial and fungal microbiome for two consecutive years in a plastic-mulched tomato production system in Florida (United States). While combinations of fumigants did not improve plant productivity more than the individual application of these products, application of fumigants with >60 % chloropicrin did significantly increase yield. Fumigant combinations had no significant effect on bacterial diversity, but fumigants with >35 % chloropicrin reduced soil fungal diversity and induced temporary changes in the soil bacterial and fungal community composition. These changes included short-term increases in the relative abundance of Firmicutes and Ascomycota, as well as decreases in other bacterial and fungal taxa. Repeated fumigation reduced network complexity and the relative abundance of several predicted bacterial functions and fungal guilds, particularly after fumigation and at end of harvest (3-months post fumigation). A structural equation model (SEM) showed fumigants not only directly impact crop yield, but they can also indirectly determine variations in plant productivity through effects on the soil microbiome. Overall, this study increases our understanding of the environmental and agricultural impacts of fumigants in a plastic-mulched tomato production system.
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Affiliation(s)
- Antonio Castellano-Hinojosa
- Southwest Florida Research and Education Center, Department of Soil, Water, and Ecosystem Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29N, Immokalee, FL, 34142, USA
| | - Elena Karlsen-Ayala
- Southwest Florida Research and Education Center, Department of Soil, Water, and Ecosystem Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29N, Immokalee, FL, 34142, USA; Northern Research Station, United States Department of Agriculture, Forest Service, 51 Millpond Road, Hamden, CT 06517, USA
| | - Nathan S Boyd
- Gulf Coast Research and Education Center, Department of Horticulture, Institute of Food and Agricultural Sciences, University of Florida, 14625 C.R. 672, Wimauma, FL 33598, USA
| | - Sarah L Strauss
- Southwest Florida Research and Education Center, Department of Soil, Water, and Ecosystem Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29N, Immokalee, FL, 34142, USA.
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Pang F, Li Q, Solanki MK, Wang Z, Xing YX, Dong DF. Soil phosphorus transformation and plant uptake driven by phosphate-solubilizing microorganisms. Front Microbiol 2024; 15:1383813. [PMID: 38601943 PMCID: PMC11005474 DOI: 10.3389/fmicb.2024.1383813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 03/14/2024] [Indexed: 04/12/2024] Open
Abstract
Phosphorus (P) is an important nutrient for plants, and a lack of available P greatly limits plant growth and development. Phosphate-solubilizing microorganisms (PSMs) significantly enhance the ability of plants to absorb and utilize P, which is important for improving plant nutrient turnover and yield. This article summarizes and analyzes how PSMs promote the absorption and utilization of P nutrients by plants from four perspectives: the types and functions of PSMs, phosphate-solubilizing mechanisms, main functional genes, and the impact of complex inoculation of PSMs on plant P acquisition. This article reviews the physiological and molecular mechanisms of phosphorus solubilization and growth promotion by PSMs, with a focus on analyzing the impact of PSMs on soil microbial communities and its interaction with root exudates. In order to better understand the ability of PSMs and their role in soil P transformation and to provide prospects for research on PSMs promoting plant P absorption. PSMs mainly activate insoluble P through the secretion of organic acids, phosphatase production, and mycorrhizal symbiosis, mycorrhizal symbiosis indirectly activates P via carbon exchange. PSMs can secrete organic acids and produce phosphatase, which plays a crucial role in soil P cycling, and related genes are involved in regulating the P-solubilization ability. This article reviews the mechanisms by which microorganisms promote plant uptake of soil P, which is of great significance for a deeper understanding of PSM-mediated soil P cycling, plant P uptake and utilization, and for improving the efficiency of P utilization in agriculture.
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Affiliation(s)
- Fei Pang
- College of Agriculture, Guangxi University, Nanning, China
| | - Qing Li
- College of Agriculture, Guangxi University, Nanning, China
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Smart Agricultural College, Yulin Normal University, Yulin, China
| | - Manoj Kumar Solanki
- Department of Life Sciences and Biological Sciences, IES University, Bhopal, India
| | - Zhen Wang
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Smart Agricultural College, Yulin Normal University, Yulin, China
| | - Yong-Xiu Xing
- College of Agriculture, Guangxi University, Nanning, China
| | - Deng-Feng Dong
- College of Agriculture, Guangxi University, Nanning, China
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Liu J, Zhang W, Teng C, Pang Z, Peng Y, Qiu J, Lei J, Su X, Zhu W, Ding C. Intercropping changed the soil microbial community composition but no significant effect on alpha diversity. Front Microbiol 2024; 15:1370996. [PMID: 38572232 PMCID: PMC10988756 DOI: 10.3389/fmicb.2024.1370996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 02/16/2024] [Indexed: 04/05/2024] Open
Abstract
Introduction Enhancing the planning of the forest-agricultural composite model and increasing the efficiency with which forest land is utilized could benefit from a thorough understanding of the impacts of intercropping between forests and agriculture on soil physicochemical properties and microbial communities. Methods Populus cathayana × candansis cv. Xinlin No.1 and Glycine max intercrop soils, along with their corresponding monocrops, were used in this study's llumina high-throughput sequencing analysis to determine the composition and diversity of soil bacterial and fungal communities. Results The findings indicated that intercropping considerably raised the soil's total phosphorus content and significantly lowered the soil's carbon nitrogen ratio when compared to poplar single cropping. Furthermore, the total carbon and nitrogen content of soil was increased and the soil pH was decreased. The sequencing results showed that intercropping had no significant effect on soil alpha diversity. Intercropping could increase the composition of fungal community and decrease the composition of bacterial community in poplar soil. At the phylum level, intercropping significantly increased the relative abundance of four dominant phyla, i.e., Patescibacteria, Proteobacteria, Patescibacteria and Deinococcus-Thermus. And the relative abundances of only two dominant phyla were significantly increased. It was found that soil total phosphorus and available phosphorus content had the strongest correlation with soil bacterial community diversity, and soil pH had the strongest correlation with soil fungal community diversity. Discussion The results of this study were similar to those of previous studies. This study can serve as a theoretical foundation for the development of a poplar and black bean-based forest-agricultural complex management system in the future.
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Affiliation(s)
- Jiaying Liu
- College of Forestry, Shenyang Agricultural University, Shenyang, China
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Weixi Zhang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Chao Teng
- Liaoning Non-Ferrous Geological Exploration and Research Institute Co., Ltd., Shenyang, China
| | | | | | - Jian Qiu
- State-owned Xinbin Manchu Autonomous County Douling Forest Farm, Fushun, China
| | - Jiawei Lei
- College of Forestry, Shenyang Agricultural University, Shenyang, China
| | - Xiaohua Su
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Wenxu Zhu
- College of Forestry, Shenyang Agricultural University, Shenyang, China
| | - Changjun Ding
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
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Wang Y, Yang X, Xu M, Geissen V. Response of soil phosphatase activity and soil phosphorus fractions to the application of chloropicrin and azoxystrobin in ginger cultivation. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2023; 103:7393-7402. [PMID: 37381879 DOI: 10.1002/jsfa.12820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 06/23/2023] [Accepted: 06/29/2023] [Indexed: 06/30/2023]
Abstract
BACKGROUND Soil fumigation can change soil nutrient cycling processes by affecting soil beneficial microorganisms, which is a key issue for soil fertility. However, the effect of combined application of fumigant and fungicide on soil phosphorus (P) availability remains largely unclear. We investigated the effects of the fumigant chloropicrin (CP) and the fungicide azoxystrobin (AZO) on soil phosphatase activity and soil P fractions in ginger production using a 28-week pot experiment with six treatments: control (CK), a single application of AZO (AZO1), double applications of AZO (AZO2), CP-fumigated soil without AZO (CP), CP combined with AZO1 (CP + AZO1) and CP combined with AZO2 (CP + AZO2). RESULTS AZO application alone significantly increased the soil labile P fractions (Resin-P + NaHCO3 -Pi + NaOH-Pi) at 9 weeks after planting (WAP) but decreased the soil phosphatase activity at 28 WAP. CP fumigation significantly reduced the soil phosphatase activity but increased the proportions of soil labile P fractions (Resin-P + NaHCO3 -Pi + NaHCO3 -Po) to total P (TP) by 9.0-15.5% throughout the experiment. The combined application of CP and AZO had a synergistic effect on soil phosphatase activity and soil P fractions compared with a single application. CONCLUSION Although AZO application and CP fumigation can increase soil available P in the short term, they might negatively affect soil fertility in the long run by inhibiting soil phosphatase activity. Soil microbial activities, especially microorganisms related to P cycling, may be responsible for the variations in soil P availability, but further research is needed. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Yan Wang
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Soil Physics and Land Management Group, Wageningen University, Wageningen, The Netherlands
| | - Xiaomei Yang
- Soil Physics and Land Management Group, Wageningen University, Wageningen, The Netherlands
- College of Natural Resources and Environment, Northwest A&F University, Yangling, China
| | - Minggang Xu
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
- Shanxi Province Key Laboratory of Soil Environment and Nutrient Resources, Institute of Eco-environment and Industrial Technology, Shanxi Agricultural University, Taiyuan, China
| | - Violette Geissen
- Soil Physics and Land Management Group, Wageningen University, Wageningen, The Netherlands
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Sun Y, Zeng R, Fang W, Hua J, Huang S, Wang Q, Cao A, Zhu F, Zhang H. Mechanisms by which chloropicrin fumigation promotes soil potassium conversion and absorption. Front Microbiol 2023; 14:1208973. [PMID: 37520378 PMCID: PMC10373873 DOI: 10.3389/fmicb.2023.1208973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 06/30/2023] [Indexed: 08/01/2023] Open
Abstract
Fumigation of soil using chloropicrin has been proven to significantly affect soil nutrient cycling, but the mechanism by which soil potassium conversion and plant uptake is promoted remains unclear. In this study, we conducted a fumigation experiment to investigate the effects of chloropicrin soil fumigation on the conversion of soil potassium post-fumigation (days 7-70), and its mechanisms, tomatos were planted in fumigated and non-fumigated soils to enable further comparisons. Results showed that the content of rapidly available potassium and available potassium decreased by 16-24% and 17-23% at day 28 respectively, when tomato was planted in chloropicrin-fumigated soils compared to the non-fumigated soils. The potassium content of tomato planted in fumigated soil was significantly higher than that planted in non-fumigated soil (30.3 vs. 21.9 mg g-1 dry weight). Chloropicrin fumigation resulted in a significant change in the soil bacterial and fungal community structures, and trigged a long-term (at least 70-day) decrease in microbial diversity. Network analysis showed that chloropicrin soil fumigation changed microbial co-occurrence patterns by decreasing bacterial total links, nodes, and average degree, and increasing fungal total links, nodes, and average degree. Chloropicrin fumigation caused significant changes in the relative abundance of Bacillus species, which are involved in potassium dissolution. Structural equation model (SEM) suggested that fumigation with chloropicrin enhanced the contribution of soil potassium to tomato growth and reduced the contribution of bacterial communities. Together, the results of our study help in understanding the crop yield enhancement mechanism of soil fumigation.
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Affiliation(s)
- Yang Sun
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Rong Zeng
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jvling Hua
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Shuijin Huang
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Feng Zhu
- Institute of Plant Protection, Guizhou Academy of Agricultural Sciences, Guiyang, China
| | - Haiyan Zhang
- Institute of Plant Protection, Guizhou Academy of Agricultural Sciences, Guiyang, China
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Yadav R, Khare P. Dissipation kinetics of chlorpyrifos and 3,5,6 trichloro-2-pyridinol under vegetation of different aromatic grasses: Linkage with enzyme kinetics and microbial community of soil. JOURNAL OF HAZARDOUS MATERIALS 2023; 448:130960. [PMID: 36860046 DOI: 10.1016/j.jhazmat.2023.130960] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Revised: 02/02/2023] [Accepted: 02/05/2023] [Indexed: 06/18/2023]
Abstract
The dissipation of chlorpyrifos (CP) and its hydrolytic metabolite 3,5,6-trichloro-2-pyridinol (TCP) in the soil is crucial for safe agriculture. However, there is still lacking relevant information about its dissipation under different vegetation for remediation purposes. In the present study, evaluation of dissipation of CP and TCP in non-planted and planted soil with different cultivars of three types of aromatic grass viz Cymbopogon martinii (Roxb. Wats), Cymbopogon flexuosus, and Chrysopogon zizaniodes (L.) Nash was examined in light of soil enzyme kinetics, microbial communities, and root exudation. Results revealed that the dissipation of CP was well-fitted into a single first-order exponential model (SFO). A significant reduction in the half-life (DT50) of CP was observed in planted soil (30-63 days) than in non-planted soil (95 days). The presence of TCP in all soil samples was observed. The three types of the inhibitory effect of CP i.e. linear mixed inhibition (increase in enzyme-substrate affinity (Km) and decrease in enzyme pool (Vmax), un-competitive inhibition (decrease in Km and Vmax), and simple competitive inhibition were observed on soil enzymes involved in mineralization of carbon, nitrogen, phosphorus, and sulfur. The improvement in the enzyme pool (Vmax) was observed in planted soil. Streptomyces, Clostridium, Kaistobacter, Planctomyces, and Bacillus were the dominant genera in CP stress soil. CP contamination in soil demonstrated a reduction of richness in microbial diversity and enhancement of functional gene family related to cellular process, metabolism, genetic, and environmental information processing. Among all the cultivars, C. flexuosus cultivars demonstrated a higher dissipation rate of CP along with more root exudation.
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Affiliation(s)
- Ranu Yadav
- Crop Production and Protection Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Puja Khare
- Crop Production and Protection Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Huang B, Chen Y, Pei Z, Jiang L, Zhang Y, Wang J, Wang J. Application of microbial organic fertilizers promotes the utilization of nutrients and restoration of microbial community structure and function in rhizosphere soils after dazomet fumigation. Front Microbiol 2023; 13:1122611. [PMID: 36741882 PMCID: PMC9891460 DOI: 10.3389/fmicb.2022.1122611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 12/28/2022] [Indexed: 01/19/2023] Open
Abstract
Introduction Soil fumigant dazomet is a broad-spectrum nematicide and fungicide that can kill non-target microbes. Fungicides or organic fertilizers are often added after fumigation to improve the recovery of soil microbes. However, the effect of adding microbial organic fertilizers (MOF) after fumigation on the structure and function of rhizosphere soil microbial communities of crops is unclear. Methods Therefore, we investigated the effects of adding Junweinong and Junlisu MOFs after dazomet fumigation on the structure and function of rhizosphere microbial communities and its relationship with soil properties and enzyme activities. Results and discussion The results showed that the addition of these two MOFs after dazomet fumigation significantly reduced the rhizosphere soil available phosphorus, available potassium, organic matter content, and urease, alkaline phosphatase, and catalase activities, but increased the soil pH compared with the fumigation treatment. The application of MOFs after fumigation resulted in significant enrichment of bacteria such as Gaiella, norank_f_Vicinamibacteraceae, and Flavisolibacter and fungi such as Peroneutypa, Olpidium, and Microascus in the rhizosphere soil of the crop and increased the relative abundance of functional genes of 13 kinds of amino acids metabolism, pyruvate metabolism, TCA cycle, and pentose phosphate pathway as well as endophytic and epiphytic functional groups in the rhizosphere soil. In particular, NH4 +-N, pH, and AK had the greatest effect on rhizosphere microorganisms. Overall, the addition of MOFs after fumigation promoted crop root nutrient uptake, enhanced rhizosphere soil microbial metabolism, allowed more beneficial communities to colonize the roots, and promoted soil microbiological health.
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Affiliation(s)
- Bin Huang
- Pest Integrated Management Key Laboratory of China Tobacco, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Yuxuan Chen
- Pest Integrated Management Key Laboratory of China Tobacco, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Zhouyang Pei
- Xuancheng Modern Agricultural Industrial Park, Xuancheng, China
| | - Lianqiang Jiang
- Sichuan Provincial Tobacco Company Liangshanzhou Company, Liangshanzhou, China
| | - Yu Zhang
- Pest Integrated Management Key Laboratory of China Tobacco, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Jing Wang
- Pest Integrated Management Key Laboratory of China Tobacco, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China
| | - Jie Wang
- Pest Integrated Management Key Laboratory of China Tobacco, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, China,*Correspondence: Jie Wang,
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Castellano-Hinojosa A, Noling JW, Bui HX, Desaeger JA, Strauss SL. Effect of fumigants and non-fumigants on nematode and weed control, crop yield, and soil microbial diversity and predicted functionality in a strawberry production system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 852:158285. [PMID: 36030874 DOI: 10.1016/j.scitotenv.2022.158285] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 07/26/2022] [Accepted: 08/22/2022] [Indexed: 06/15/2023]
Abstract
Fumigants are commonly used to control soil-borne pathogens of high-value crops, but they may also impact non-target soil microorganisms. Increasing interest in the use of sustainable management practices to control plant- and root-parasitic nematodes has resulted in the formulation of non-fumigant nematicides (chemicals or bionematicides) which are considered environmentally friendly alternatives to fumigants. However, the impact of these new products compared to standard fumigants on soil-borne pathogens, plant production, and the diversity and composition of non-target microbial communities in all crops remains unclear. To begin to address this knowledge gap, we examined the effect of fumigants commonly used in Florida (United States) strawberry production and newly formulated non-fumigant nematicides on nematode and weed control, plant growth, crop yield, and bacterial and fungal community diversity and predicted functionality. We found the standard fumigants increased crop yields and reduced weed pressure more than non-fumigants. Both fumigants and non-fumigants were an efficient management strategy to control sting nematodes. Treatments also impacted the abundance of specific beneficial and antagonistic taxa. Both fumigants and non-fumigants reduced soil bacterial and fungal diversity, an effect that remained for six months, thus suggesting a potential residual impact of these products on soil microorganisms. However, only fumigants altered soil microbial community composition and reduced network complexity, inducing a decrease or even a loss of some predicted bacterial and fungal functions, particularly during the first weeks after fumigation. Nevertheless, soil collected at the end of the season showed significant levels of root-knot nematode suppression in a growth chamber experiment, irrespective of the previous treatment. By linking the effect of fumigants and non-fumigants on soil-borne pests, plant and production, and the soil microbiome, this study increases our knowledge regarding the environmental impact of these products.
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Affiliation(s)
- Antonio Castellano-Hinojosa
- Southwest Florida Research and Education Center, Department of Soil and Water Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29N, Immokalee, FL 34142, USA
| | - Joseph W Noling
- Gulf Coast Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, 14625 Co Rd 672, Wimauma, FL 33598, USA
| | - Hung Xuan Bui
- Gulf Coast Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, 14625 Co Rd 672, Wimauma, FL 33598, USA
| | - Johan A Desaeger
- Gulf Coast Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, 14625 Co Rd 672, Wimauma, FL 33598, USA
| | - Sarah L Strauss
- Southwest Florida Research and Education Center, Department of Soil and Water Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29N, Immokalee, FL 34142, USA.
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Wang P, Li Q, Ge F, Li F, Liu Y, Deng S, Zhang D, Tian J. Correlation of bacterial community with phosphorus fraction drives discovery of Actinobacteria involved soil phosphorus transformation during the trichlorfon degradation. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 302:119043. [PMID: 35217138 DOI: 10.1016/j.envpol.2022.119043] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 02/17/2022] [Accepted: 02/18/2022] [Indexed: 06/14/2023]
Abstract
Trichlorfon (TCF) is a broad-spectrum phosphorus (P)-containing pesticide, yet its effects on soil P fraction transformation and bacterial communities during the TCF degradation in soils is unknown. In this study, we investigated soil TCF degradation behavior at different contents of 50, 100 and 200 mg/kg, and analyzed residual TCF contents and metabolites by gas chromatography mass spectrometry after 216-h incubation. Our results suggested that TCF was gradually degraded in soils and was be initially hydrolyzed to dichlorvos via P-C bond cleavage and then other P-containing metabolites. By analyzing different P fractions and soil microbial community composition, we found significant increases of soil available phosphorus contents from 2.76 mg/kg (control) to 3.23 mg/kg (TCF-50), 5.12 mg/kg (TCF-100) and 5.72 mg/kg (TCF-200), respectively. Inorganic CaCl2-P was easily and instantly transformed to primary mineral inorganic P (Pi) forms of HCl-P and citrate-P, while the proportion of enzyme-P (a labile organic P) fluctuated throughout TCF degradation process. Soil available P contents and Pi fractions were significantly correlated with the relative abundance of Actinobacteria. These results highlighted that Actinobacteria is the dominant soil species utilizing TCF as P sources to increase its community richness, and subsequently affect the transformation of P fractions to regulate soil P cycle. Our study gives new understanding on the microorganisms can involve soil P transformation during organophosphorus pesticides degradation in soils, highlighting the importance of bacteria in P transformation and pesticides soil decontamination.
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Affiliation(s)
- Peiying Wang
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China
| | - Qiqiang Li
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China
| | - Fei Ge
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China
| | - Feng Li
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China
| | - Yun Liu
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China
| | - Songqiang Deng
- Research Institute for Environmental Innovation (Tsinghua-Suzhou), Suzhou, China
| | - Dayi Zhang
- School of Environment, Tsinghua University, Beijing, China
| | - Jiang Tian
- Department of Environmental Science and Engineering, College of Environment and Resources, Xiangtan University, Xiangtan, China.
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12
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Wang M, Wu Y, Zhao J, Liu Y, Chen Z, Tang Z, Tian W, Xi Y, Zhang J. Long-term fertilization lowers the alkaline phosphatase activity by impacting the phoD-harboring bacterial community in rice-winter wheat rotation system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153406. [PMID: 35092777 DOI: 10.1016/j.scitotenv.2022.153406] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 01/16/2022] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
PhoD-harboring bacteria and the secreted alkaline phosphatases (ALP) are crucial in the regulation of soil phosphorus (P) cycling. However, the influential factors of these crucial indicators and their internal interactions remain controversial. Here, a long-term field experiment containing different fertilization regimes was conducted (chemical, organic, and no fertilizer applied). The results indicated that the richness and diversity of phoD-harboring bacterial community were significantly decreased after long-term fertilization. The applied fertilizer promoted the growth of competitive species, while phoD-harboring bacteria lost the advantage to outcompete other microorganisms after long-term fertilization. The decreased ALP activity was caused by the declined phoD gene abundance, which is attributed to the comprehensive effects of soil organic C (SOC), total nitrogen (TN), and various forms of P. The random forest models identified SOC, TN, and available P (AP) to be the dominant environmental factors in shaping the phoD-harboring bacterial community. In addition, some other forms of P such as organic P (Po), inorganic P (Pi) or total P (TP) also exerted significant effects. Different fertilization regimes changed the keystone genera that contributed significantly to soil ALP activities, while Pseudolabrys and Pseudomonas were predicted to be the most important genera regardless of different fertilization regimes. This study extends the understanding of the main process and mechanisms of P mobilization in response to different fertilization regimes.
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Affiliation(s)
- Mengmeng Wang
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Yuncheng Wu
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Jiayin Zhao
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Yu Liu
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Zhe Chen
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Zhaoyang Tang
- Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Sciences, Huzhou University, Huzhou 313000, China
| | - Wei Tian
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China.
| | - Yunguan Xi
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Jibing Zhang
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
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13
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Li Q, Zhang D, Cheng H, Ren L, Jin X, Fang W, Yan D, Li Y, Wang Q, Cao A. Organic fertilizers activate soil enzyme activities and promote the recovery of soil beneficial microorganisms after dazomet fumigation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 309:114666. [PMID: 35151999 DOI: 10.1016/j.jenvman.2022.114666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 01/27/2022] [Accepted: 02/01/2022] [Indexed: 06/14/2023]
Abstract
Soil fumigation can reduce the impact of soil-borne diseases, weeds and insect pests on commercial crop production. Unfortunately, fumigation also kills beneficial microorganisms. In this study, we explored if dazomet fumigation could be used in combination with organic fertilizers (silicon fertilizer, potassium humate organic fertilizer, Bacillus microbial fertilizer, and mixtures of the last two) to reduce its impact on soil beneficial microorganisms. We evaluated the effects of adding these fertilizers after fumigation on the soil's physical and chemical properties and its enzyme activities, as well as its effects on the soil microbial communities under continuous production for >20 years. We found that fertilizers applied after fumigation increased the soil nitrate nitrogen content by 11.6%-29.4%, increased available potassium content by 5.6%-26.3% and increased organic matter content by 28.5%-48.8%. In addition, soil conductivity and water content increased significantly by 8.2%-26.5% and 8.0%-16.0%, respectively. The activities of soil catalase and soil sucrase were significantly increased by 6.2%-15.9% and 133.1%-238.5%, respectively. High-throughput DNA sequencing showed that fertilizers applied after fumigation increased the relative abundance of the phyla Proteobacteria, Actinobacteria and Ascomycota; and the genera Sphingomonas, Chaetomium and Mortierella. Silicon fertilizer applied after fumigation has the most significant promotion effect on soil micro-ecological health. The results showed that organic fertilizers applied after fumigation can improve the soil's fertility, activate soil enzyme activities and promote the recovery of soil beneficial microorganisms, which are all factors that improve crop quality and yield.
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Affiliation(s)
- Qingjie Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Daqi Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Hongyan Cheng
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Lirui Ren
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Xi Jin
- Hebei Technology Innovation Center for Green Management of Soil-borne Diseases Baoding University, Baoding, Hebei, 071000, China
| | - Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; State Key Laboratory for Biology of Plant Disease and Insect Pests, Beijing, 100193, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; State Key Laboratory for Biology of Plant Disease and Insect Pests, Beijing, 100193, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; State Key Laboratory for Biology of Plant Disease and Insect Pests, Beijing, 100193, China
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; State Key Laboratory for Biology of Plant Disease and Insect Pests, Beijing, 100193, China.
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14
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Sennett LB, Goyer C, Burton DL, Zebarth BJ, Whitney S. Chemical fumigation and biofumigation alter soil bacterial community diversity and composition. FEMS Microbiol Ecol 2022; 98:fiac026. [PMID: 35441686 DOI: 10.1093/femsec/fiac026] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024] Open
Abstract
Chemical fumigation and biofumigation are used to reduce soil-borne diseases in agricultural production systems; however, non-targeted soil microorganisms may also be affected. This study compared the effects of chemical fumigation, either used alone or combined with an organic amendment, and biofumigation on soil bacterial community diversity and composition under controlled conditions over 160 days. Treatments included: fumigation with chloropicrin (CP), fumigation with metam sodium used alone (MS) or combined with barley plant residues (MSBR); biofumigation with mustard plant residues; addition of barley plant residues; and untreated control. Biofumigation had a greater impact on bacterial diversity at early time points, transiently decreasing species evenness and yielding the most dissimilar β-diversity after 3 days. MS fumigation did not affect bacterial diversity indices; however, MSBR transiently decreased species evenness after 8 days. CP-treated soil had decreased species evenness that did not recover over time and had the most dissimilar β-diversity at the end of the incubation compared to all other treatments. This study demonstrated that CP fumigation had the greatest and most persistent impact on bacterial diversity, whereas MS fumigation and biofumigation led to transient decreases in bacterial diversity.
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Affiliation(s)
- Louise B Sennett
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Truro, NS, Canada
- Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada
| | - Claudia Goyer
- Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada
| | - David L Burton
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Truro, NS, Canada
| | - Bernie J Zebarth
- Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada
| | - Sean Whitney
- Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada
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15
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Castellano-Hinojosa A, Boyd NS, Strauss SL. Impact of fumigants on non-target soil microorganisms: a review. JOURNAL OF HAZARDOUS MATERIALS 2022; 427:128149. [PMID: 34999405 DOI: 10.1016/j.jhazmat.2021.128149] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 12/21/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
Fumigants have been used for decades to control soil-borne pathogens of high-value crops, and increasing evidence indicates they can affect non-target soil microbial communities. Understanding the impacts of these products on soil microorganisms is of critical importance not only for evaluating their environmental safety, but also because soil microbial communities have a central role in soil quality and nutrient cycling, plant growth, and crop production. Thus, we conducted a systematic review and metanalysis study of fumigant impacts on non-target soil microorganisms. In general, we found that fumigation decreases the bacterial diversity and abundance of total bacteria and nitrogen-cycling genes by approximately 10-50% during the first four weeks after application compared to non-treated soils. These decreases appear transient and tend to diminish or disappear after four weeks. Increases in bacterial diversity and abundance can occur after fumigation but are less common. Fumigant application can also alter bacterial community composition during the first six weeks after treatment by significantly increasing and/or decreasing the relative abundance of bacterial taxa involved in key soil functions such as N-cycling and plant-growth promotion. Knowledge gaps and areas where future research efforts should be prioritized to improve our understanding of the impact of organic fumigants on non-target soil microorganisms are discussed.
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Affiliation(s)
- Antonio Castellano-Hinojosa
- Southwest Florida Research and Education Center, Department of Soil and Water Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29 N, Immokalee, FL 34142, USA
| | - Nathan S Boyd
- Gulf Coast Research and Education Center, Department of Horticulture, Institute of Food and Agricultural Sciences, University of Florida, 14625 C.R. 672, Wimauma, FL 33598, USA
| | - Sarah L Strauss
- Southwest Florida Research and Education Center, Department of Soil and Water Sciences, Institute of Food and Agricultural Sciences, University of Florida, 2685 State Rd 29 N, Immokalee, FL 34142, USA.
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16
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Shi W, Xing Y, Zhu Y, Gao N, Ying Y. Diverse responses of pqqC- and phoD-harbouring bacterial communities to variation in soil properties of Moso bamboo forests. Microb Biotechnol 2022; 15:2097-2111. [PMID: 35298867 PMCID: PMC9249317 DOI: 10.1111/1751-7915.14029] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 03/02/2022] [Accepted: 03/03/2022] [Indexed: 11/30/2022] Open
Abstract
Phosphate‐mobilizing bacteria (PMB) play a critical role in the regulation of phosphorus availability in the soil. The microbial genes pqqC and phoD encode pyrroloquinoline quinone synthase and bacterial alkaline phosphatase, respectively, which regulate inorganic and organic phosphorus mobilization, and are therefore used as PMB markers. We examined the effects of soil properties in three Moso bamboo forest sites on the PMB communities that were profiled using high‐throughput sequencing. We observed differentiated responses of pqqC‐ and phoD‐harbouring PMB communities to various soil conditions. There was significant variation among the sites in the diversity and structure of the phoD‐harbouring community, which correlated with variation in phosphorus levels and non‐capillary porosity; soil organic carbon and soil water content also affected the structure of the phoD‐harbouring community. However, no significant difference in the diversity of pqqC‐harbouring community was observed among different sites, while the structure of the pqqC‐harbouring bacteria community was affected by soil organic carbon and soil total nitrogen, but not soil phosphorus levels. Overall, changes in soil conditions affected the phoD‐harbouring community more than the pqqC‐harbouring community. These findings provide a new insight to explore the effects of soil conditions on microbial communities that solubilize inorganic phosphate and mineralize organic phosphate.
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Affiliation(s)
- Wenhui Shi
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Yijing Xing
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Ying Zhu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Ning Gao
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Yeqing Ying
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
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17
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Wang Y, Yang X, Xu M, Geissen V. Effects of chloropicrin fumigation and azoxystrobin application on ginger growth and phosphorus uptake. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 232:113246. [PMID: 35091296 DOI: 10.1016/j.ecoenv.2022.113246] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Revised: 01/07/2022] [Accepted: 01/24/2022] [Indexed: 06/14/2023]
Abstract
Soil chloropicrin (CP) fumigation helps to increase crop yields by eliminating soil-borne diseases which inhibit plant growth. However, little is known about the effect of the CP fumigation combined with fungicide application on plant growth and nutrient uptake. In this study, we conducted a mesocosm experiment with six treatments: CK (untreated soil), AZO1 (a single application of azoxystrobin (AZO)), AZO2 (double applications of AZO), CP (CP fumigation with no AZO), CP+AZO1 (CP combined with AZO1) and CP+AZO2 (CP combined with AZO2) to investigate the effects of CP fumigation and AZO application on ginger growth and phosphorus (P) uptake. Results showed that a single application of AZO had no significant effect on ginger height, biomass and P uptake whether treated with or without CP fumigation, whereas double applications of AZO combined with CP fumigation significantly improved ginger height and the total amount of P in root (P < 0.05). Meanwhile, AZO residues were similar in all treatments with the same number of applications, with less than 50% remaining in the soil after 7 days applied, indicating that CP fumigation treatment did not influence AZO degradation in ginger cultivation. In addition, although the differences in P use efficiency observed across the different treatments were not significant, they nevertheless suggest that the P budget and soil microbial activity may contribute to those differences. Therefore, further studies should be done to link P cycling with microbial communities, and how these related to fumigation and fungicide application.
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Affiliation(s)
- Yan Wang
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA, Wageningen, The Netherlands; National Engineering Laboratory for Improving Quality of Arable Land, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Xiaomei Yang
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA, Wageningen, The Netherlands; College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China.
| | - Minggang Xu
- National Engineering Laboratory for Improving Quality of Arable Land, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Violette Geissen
- Soil Physics and Land Management Group, Wageningen University, P.O. Box 47, 6700 AA, Wageningen, The Netherlands.
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18
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Pu R, Wang P, Guo L, Li M, Cui X, Wang C, Liu Y, Yang Y. The remediation effects of microbial organic fertilizer on soil microorganisms after chloropicrin fumigation. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 231:113188. [PMID: 35051756 DOI: 10.1016/j.ecoenv.2022.113188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 01/05/2022] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
Soil fumigation with chloropicrin (CP) is an effective means of overcoming continuous cropping obstacles (CCO) in Panax notoginseng and improving its yield and quality. CP fumigation can change the microbial community of soil. Therefore, a key step after CP fumigation is the rapid restoration of soil microorganisms and the promotion of beneficial microorganism proliferation as the dominant flora. In this study, continuously cropped soil of P. notoginseng was fumigated with CP, and general organic fertilizer (GOF) or microbial organic fertilizer (MOF) was used to restore soil microorganisms after fumigation. Soil physical and chemical properties, soil microorganisms, and quality of P. notoginseng were investigated. The application of MOF and GOF after CP fumigation promoted increases in soil nitrogen (9.88% and 8.21%, respectively), phosphorus (21.39% and 11.57%, respectively), potassium (7.99% and 2.75%, respectively), and the quality of P. notoginseng; it also promoted the accumulation of saponins in the main roots (23.62% and 9.12%, respectively). Application of MOF and GOF can restore the diversity of microorganisms in the soil. MOF increased the relative abundance of the beneficial soil microorganisms Glomeromycota, Mortierellomycota, Humicola and Bacillus, thereby lowering the relative abundance of the harmful Ascomycota and Fusarium relative to GOF. In summary, CP fumigation reduces the diversity of microorganisms in the soil. The addition of organic fertilizer can promote microbial diversity and increase the relative abundance of beneficial species. Moreover, the promotion effect of MOF is better than that of GOF, thereby improving soil fertility and ultimately promoting the quality and yield of P. notoginseng.
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Affiliation(s)
- Rongfeng Pu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China
| | - Panpan Wang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China
| | - Lanping Guo
- China Academy of Chinese Medical Sciences, Beijing 100700, China
| | - Minghua Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China; Yunnan Provincial Key Laboratory of Panax notoginseng, Kunming 650500, China; Key Laboratory of Panax notoginseng Resources Sustainable Development and Utilization of State Administration of Traditional Chinese Medicine, Kunming 650500, China; Kunming Key Laboratory of Sustainable Development and Utilization of Famous-Region Drug, Kunming 650500, China; Sanqi Research Institute of Yunnan Province, Kunming 650500, Yunnan, China
| | - Xiuming Cui
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China; Yunnan Provincial Key Laboratory of Panax notoginseng, Kunming 650500, China; Key Laboratory of Panax notoginseng Resources Sustainable Development and Utilization of State Administration of Traditional Chinese Medicine, Kunming 650500, China; Kunming Key Laboratory of Sustainable Development and Utilization of Famous-Region Drug, Kunming 650500, China; Sanqi Research Institute of Yunnan Province, Kunming 650500, Yunnan, China
| | - Chengxiao Wang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China; Yunnan Provincial Key Laboratory of Panax notoginseng, Kunming 650500, China; Key Laboratory of Panax notoginseng Resources Sustainable Development and Utilization of State Administration of Traditional Chinese Medicine, Kunming 650500, China; Kunming Key Laboratory of Sustainable Development and Utilization of Famous-Region Drug, Kunming 650500, China; Sanqi Research Institute of Yunnan Province, Kunming 650500, Yunnan, China
| | - Yuan Liu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China; Yunnan Provincial Key Laboratory of Panax notoginseng, Kunming 650500, China; Key Laboratory of Panax notoginseng Resources Sustainable Development and Utilization of State Administration of Traditional Chinese Medicine, Kunming 650500, China; Kunming Key Laboratory of Sustainable Development and Utilization of Famous-Region Drug, Kunming 650500, China; Sanqi Research Institute of Yunnan Province, Kunming 650500, Yunnan, China.
| | - Ye Yang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, Yunnan, China; Yunnan Provincial Key Laboratory of Panax notoginseng, Kunming 650500, China; Key Laboratory of Panax notoginseng Resources Sustainable Development and Utilization of State Administration of Traditional Chinese Medicine, Kunming 650500, China; Kunming Key Laboratory of Sustainable Development and Utilization of Famous-Region Drug, Kunming 650500, China; Sanqi Research Institute of Yunnan Province, Kunming 650500, Yunnan, China.
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19
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Zhang D, Cheng H, Hao B, Li Q, Wu J, Zhang Y, Fang W, Yan D, Li Y, Wang Q, Jin X, He L, Cao A. Fresh chicken manure fumigation reduces the inhibition time of chloropicrin on soil bacteria and fungi and increases beneficial microorganisms. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 286:117460. [PMID: 34438480 DOI: 10.1016/j.envpol.2021.117460] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 04/22/2021] [Accepted: 05/22/2021] [Indexed: 06/13/2023]
Abstract
Chloropicrin (CP) controls soil-borne plant diseases caused by pathogenic microbes, increases crop yield, but has a long-term inhibitory effect on beneficial soil microorganisms. Therefore, we evaluated the effects of biofumigation material fresh chicken manure (FCM) on soil microorganisms, and the duration of those effects in this experiment. Our results showed that in the laboratory, FCM significantly increased substrate-induced respiration (SIR) of soil microorganisms by 2.2-3.2 times at 80 d compared to the control, however, CP significantly inhibited the SIR of soil microorganisms. FCM and CP increased NH4+-N concentration within 40 days which then returned to the control level. FCM increased NO3--N by 2.82-5.78 times by 80 days, compared with the control, while the concentration of NO3--N in the CP treatment was not significantly different from the control at the 80 day. Although in the laboratory FCM inhibited the relative abundance of 16 S rRNA and the nitrogen cycle functional genes AOA amoA, AOB amoA, nirK and nosZ over a 40-day period, the taxonomic diversity of soil bacteria and fungi in the FCM treatment were restored to unfumigated level within 90 days in the field. However, CP treatment has a strong inhibitory effect on soil microorganisms after 90 days. Importantly, the relative abundance of some beneficial microorganisms that control soil-borne pathogenic microbes or degrade pollutants increased significantly in FCM, including Bacillus, Pseudomonas and Streptomyces bacterial genera and Chaetomium and Mycothermus fungal genera. Noteworthy, like CP, FCM still had a strong inhibitory effect on Fusarium at 90 d. Our results indicated that FCM not only increased the content of inorganic nitrogen and improved the respiration rate of soil microorganisms, but it also shortened the recovery time of beneficial soil microorganisms and increased taxonomic diversity. Our previous reports showed that FCM and CP treatments had the same effect in disease control and crop growth. Combined with the results of this experiment, we believe that FCM has the potential to replace CP, which would eliminate CP's detrimental environmental impact, improve farmer safety and promote sustainable crop production.
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Affiliation(s)
- Daqi Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Hongyan Cheng
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Baoqiang Hao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Qingjie Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Jiajia Wu
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Yi Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Xi Jin
- Hebei Technology Innovation Center for Green Management of Soil-borne Diseases Baoding University, Baoding, Hebei, 071000, China
| | - Lin He
- College of Plant Protection, Southwest University, Chongqing, 400716, China.
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Hebei Technology Innovation Center for Green Management of Soil-borne Diseases Baoding University, Baoding, Hebei, 071000, China.
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20
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Cheng H, Zhang D, Ren L, Song Z, Li Q, Wu J, Fang W, Huang B, Yan D, Li Y, Wang Q, Cao A. Bio-activation of soil with beneficial microbes after soil fumigation reduces soil-borne pathogens and increases tomato yield. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 283:117160. [PMID: 33878684 DOI: 10.1016/j.envpol.2021.117160] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 01/21/2021] [Accepted: 04/12/2021] [Indexed: 05/20/2023]
Abstract
Soil-borne diseases have become increasingly problematic for farmers producing crops intensively under protected agriculture. Although soil fumigants are convenient and effective for minimizing the impact of soil-borne disease, they are most often detrimental to beneficial soil microorganisms. Previous research showed that bio-activation of soil using biological control agents present in biofertilizers or organic fertilizers offered promise as a strategy for controlling soil-borne pathogens when the soil was bio-activated after fumigation. Our research sought to determine how bio-activation can selectively inhibit pathogens while promoting the recovery of beneficial microbes. We monitored changes in the soil's physicochemical properties, its microbial community and reductions in soil-borne pathogens. We found that the population density of Fusarium and Phytophthora were significantly reduced and tomato yield was significantly increased when the soil was bio-activated. Soil pH and soil catalase activity were significantly increased, and the soil's microbial community structure was changed, which may have enhanced the soil's ability to reduce Fusarium and Phytophthora. Our results showed that soil microbial diversity and relative abundance of beneficial microorganisms (such as Sphingomonas, Bacillus, Mortierella and Trichoderma) increased shortly after bio-activation of the soil, and were significantly and positively correlated with pathogen suppression. The reduction in pathogens may have been due to a combination of fumigation-fertilizer that reduced pathogens directly, or the indirect effect of an optimized soil microbiome that improved the soil's non-biological factors (such as soil pH, fertility structure), enhanced the soil's functional properties and increased tomato yield.
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Affiliation(s)
- Hongyan Cheng
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Daqi Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Lirui Ren
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Zhaoxin Song
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Laboratory of Integrated and Urban Phytopathology, University of Liege, Gembloux Agro-Bio Tech, Passage des Deportes 2, 5030, Gembloux, Belgium
| | - Qingjie Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Jiajia Wu
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China
| | - Bin Huang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Institute of Tobacco Research, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing, 100029, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing, 100029, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing, 100029, China
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing, 100029, China.
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21
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Gao J, Pei H, Xie H. Influence of Allyl Isothiocyanate on the Soil Microbial Community Structure and Composition during Pepper Cultivation. J Microbiol Biotechnol 2021; 31:978-989. [PMID: 33782224 PMCID: PMC9705941 DOI: 10.4014/jmb.2012.12016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 03/09/2021] [Accepted: 03/29/2021] [Indexed: 12/15/2022]
Abstract
Allyl isothiocyanate (AITC), as a fumigant, plays an important role in soil control of nematodes, soilborne pathogens, and weeds, but its effects on soil microorganisms are unclear. In this study, the effects of AITC on microbial diversity and community composition of Capsicum annuum L. soil were investigated through Illumina high-throughput sequencing. The results showed that microbial diversity and community structure were significantly influenced by AITC. AITC reduced the diversity of soil bacteria, stimulated the diversity of the soil fungal community, and significantly changed the structure of fungal community. AITC decreased the relative abundance of dominant bacteria Planctomycetes, Acinetobacter, Pseudodeganella, and RB41, but increased that of Lysobacter, Sphingomonas, Pseudomonas, Luteimonas, Pseudoxanthomonas, and Bacillus at the genera level, while for fungi, Trichoderma, Neurospora, and Lasiodiplodia decreased significantly and Aspergillus, Cladosporium, Fusarium, Penicillium, and Saccharomyces were higher than the control. The correlation analysis suggested cellulase had a significant correlation with fungal operational taxonomic units and there was a significant correlation between cellulase and fungal diversity, while catalase, cellulose, sucrase, and urease were the major contributors in the shift of the community structure. Our results will provide useful information for the use of AITC in the assessment of environmental and ecological security.
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Affiliation(s)
- Jingxia Gao
- Institute of Germplasm Resources, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan 750002, P.R. China
| | - Hongxia Pei
- Institute of Germplasm Resources, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan 750002, P.R. China
| | - Hua Xie
- Institute of Germplasm Resources, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan 750002, P.R. China,Corresponding author Phone: +13709506257 E-mail: Xie
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22
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Duan WJ, Gao JF, Zhang WZ, Wang YW, Liu J. Elimination of antibiotic resistance genes in waste activated sludge by persulfate treatment during the process of sludge dewatering. BIORESOURCE TECHNOLOGY 2020; 311:123509. [PMID: 32417659 DOI: 10.1016/j.biortech.2020.123509] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Revised: 05/01/2020] [Accepted: 05/05/2020] [Indexed: 06/11/2023]
Abstract
Two sludge conditioning modes (nanoscale zero valent iron modified by Ginkgo biloba L. leaf (G-nZVI)/sodium persulfate (PS) conditioning with different ratios (1:0, 1:0.1, 1:1 and 1:10) and G-nZVI/PS conditioning with continuous addition) in reducing the specific resistance of filtration (SRF) and removing antibiotic resistant genes (ARGs) were investigated. After 3 min, the SRF values decreased in following order: 2.45 × 108 m/kg (1:10) > 5.95 × 106 m/kg (1:0.1) > 3.72 × 106 m/kg (1:0) > 4.92 × 105 m/kg (1:1). In the continuous addition (1:1), the SRF value decreased from 1.04 × 108 m/kg to 6.47 × 106 m/kg at 9 min. Removal efficiency of ARGs was 2-6 orders of magnitude and no regeneration of ARGs was observed in sludge and water phase. When treated samples were incubated for 36 h, dominant microflora was negatively correlated with ARGs. This study revealed persulfate treatment could achieve dewatering and remove ARGs, simultaneously.
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Affiliation(s)
- Wan-Jun Duan
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing 100124, China
| | - Jing-Feng Gao
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing 100124, China.
| | - Wen-Zhi Zhang
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing 100124, China
| | - Yu-Wei Wang
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing 100124, China
| | - Jie Liu
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Beijing University of Technology, Beijing 100124, China
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23
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Zhang T, Qin M, Wei C, Li D, Lu X, Zhang L. Suspended particles phoD alkaline phosphatase gene diversity in large shallow eutrophic Lake Taihu. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 728:138615. [PMID: 32348945 DOI: 10.1016/j.scitotenv.2020.138615] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 04/08/2020] [Accepted: 04/08/2020] [Indexed: 06/11/2023]
Abstract
The bacterial phoD gene encodes alkaline phosphatase plays an important role in the release of bioavailable inorganic phosphorus (P) from organic P in environmental systems. However, phoD gene diversity in suspended particles in shallow freshwater lakes is poorly understood. In this study, we explored the potential relationship between environmental factors and phoD phosphatase gene in suspended particles in different ecosystem types (lake zones) in Lake Taihu, a large shallow eutrophic lake in China. Quantitative PCR and high-throughput sequencing were used to analyze phoD gene abundance and the phoD-harboring bacterial community composition. Our results indicate that the distribution of phoD gene abundance in suspended particles had a high spatiotemporal heterogeneity. The phoD gene abundance in each lake zone decreased significantly from June to September. The dominant phoD-harboring phylum in all samples was Actinobacteria, followed by Proteobacteria, Cyanobacteria and Gemmatimonadetes. The first predominant phoD-harboring genera varied among samples, but most of them belonged to phylum Actinobacteria. Driven by different environmental factors, the phoD-harboring bacterial community structure varied with sampling month and ecosystem type. Nitrate and ammonia nitrogen were the main environmental drivers of phoD-harboring bacterial community in suspended particles in the river mouth zone, while water pH and dissolved oxygen were important factors for the algae-dominated, macrophyte-dominated and central lake zones.
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Affiliation(s)
- Tingxi Zhang
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, School of Geography Science, Nanjing Normal University, Nanjing 210023, China; Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, Nanjing Normal University, Nanjing 210023, China.
| | - Mengyao Qin
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China
| | - Chao Wei
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China
| | - Defang Li
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China
| | - Xiaoran Lu
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China
| | - Limin Zhang
- Nanjing Normal University, School of Environment, Wenyuan Road 1, Nanjing 210023, China
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