Biofiltration of oil sands process water in fixed-bed biofilm reactors shapes microbial community structure for enhanced degradation of naphthenic acids

A multi-step approach: Coupling of biodegradation and UV photocatalytic oxidation TiO2 for the treatment of naphthenic acid fraction compounds in oil sands process-affected water

Bitumen extraction in Alberta's oil sands region uses large volumes of water, leading to an abundance of oil sands process-affected water (OSPW). OSPW contains naphthenic acid fraction compounds (NAFCs) which have been found to contribute to OSPW toxicity. This study utilized a multistep treatment, coupling biological degradation with UV photocatalytic oxidation, and nutrient addition to boost the native microbial community's degradation capacity. OSPW initially contained 40-42 mg/L NAFCs with a toxicity of 3.8-3.9 TU. Initial biodegradation (Step 1) was used to remove the easily biodegradable NAFCs (11-25% removal), followed by a light or heavy dose of oxidation (Step 2) to breakdown the recalcitrant NAFCs (66-82% removal). Lastly, post-oxidation biodegradation with nutrients (Step 3) removed the residual bioavailable NAFCs (16-31% removal). By the end of the multistep treatment, the final NAFC concentrations and toxicity ranged from 5.3 to 6.8 mg/L and 1.1-1.2 TU. Analysis showed that OPSW was limited in phosphorus (below detection limit), and the addition of nutrients improved the degradation of NAFCs. Two treatments throughout the multistep treatment never received nutrients and showed minimal NAFC degradation post-oxidation. The native microbial community survived the stress from UV photocatalytic oxidation as seen by the post-oxidation NAFC biodegradation. Microbial community diversity was reduced considerably following oxidation, but increased with nutrient addition. The microbial community consisted predominately of Proteobacteria (Gammaproteobacteria and Alphaproteobacteria), and the composition shifted depending on the level of oxidation received. Possible NAFC-degrading microbes identified after a light oxidation dose included Pseudomonas, Acinetobacter and Xanthomonadales, while Xanthobacteracea and Rhodococcus were the dominant microbes after heavy oxidation. This experiment confirms that the microbial community is capable of degrading NAFCs and withstanding oxidative stress, and that degradation is further enhanced with the addition of nutrients.

Comprehensive characterization of organics in oil sands process water in constructed mesocosms utilizing multiple analytical methods

This study aims to provide a thorough characterization of dissolved organics in oil sands process water (OSPW) in field-based aquatic mesocosms at both molecular and bulk measurement levels using multiple analytical methods. In a 3-year outdoor mesocosm experiment, the analysis of naphthenic acid (NA) species was conducted using ultra-performance liquid chromatography time-of-flight mass spectrometry (UPLC-TOFMS). The results revealed the removal of both total NAs (38% and 35%) and classical NAs (O2-NAs, 58% and 49%) in undiluted and half-diluted OSPW, respectively. The increased ratios of oxidized NAs (O3-O6 NAs) to classical NAs suggested a transformation trend. The results also indicated that O2-NAs with higher carbon number and lower double bond equivalent (DBE) were more easily degraded in the mesocosm systems. Biomimetic extraction using solid-phase microextraction (BE-SPME) measurement displayed 26% (undiluted OSPW) and 30% (half-diluted OSPW) decrease in total bioavailable organics over 3 years. Naphthenic acids fraction compounds (NAFCs) obtained by liquid-liquid extraction (LLE) were also determined using Fourier transform infrared spectroscopy (FTIR). Reduction in acute toxicity for undiluted (43%) and half-diluted (26%) OSPW was observed over 3 years, which are well correlated with the decreases of NAs and BE-SPME concentrations. Moreover, BE-SPME values were found to be linearly correlated with total NAs concentrations (r = 0.96) and NAFCs (r = 0.96). Additionally, the linear relationships of individual O2-O6 NA species and BE-SPME concentrations unveiled the changes in the relative abundances of O2-O6 NA species in total bioavailable organics over time in the mesocosms. The present study has provided comprehensive insights by integrating various analytical methods, contributing valuable information for assessing the effectiveness of aquatic mesocosm systems in studying the temporal changes of organics in OSPW.

Sample preparation, analytical characterization, monitoring, risk assessment and treatment of naphthenic acids in industrial wastewater and surrounding water impacted by unconventional petroleum production

Industrial extraction of unconventional petroleum results in notable volumes of oil sands process water (OSPW), containing elevated concentrations of naphthenic acids (NAs). The presence of NAs represents an intricate amalgamation of dissolved organic constituents, thereby presenting a notable hurdle for the domain of environmental analytical chemistry. There is growing concern about monitoring the potential seepage of OSPW NAs into nearby groundwater and river water. This review summarizes recent studies on sample preparation, characterization, monitoring, risk assessment, and treatment of NAs in industrial wastewater and surrounding water. Sample preparation approaches, such as liquid-liquid extraction, solid phase microextraction, and solid phase extraction, are crucial in isolating chemical standards, performing molecular level analysis, assessing aquatic toxicity, monitoring, and treating OSPW. Instrument techniques for NAs analysis were reviewed to cover different injection modes, ionization sources, and mass analyzers. Recent studies of transfer and transformation of NAs provide insights to differentiate between anthropogenic and natural bitumen-derived sources of NAs. In addition, related risk assessment and treatment studies were also present for elucidation of environmental implication and reclamation strategies. The synthesis of the current state of scientific knowledge presented in this review targets government regulators, academic researchers, and industrial scientists with interests spanning analytical chemistry, toxicology, and wastewater management.

Invited review: Current perspectives for analyzing the dairy biofilms by integrated multiomics

Biofilms formed by pathogenic or spoilage microorganisms have become serious issues in the dairy industry, as this mode of life renders such microorganisms highly resistant to cleaning-in-place (CIP) procedures, disinfectants, desiccation, and other control strategies. The advent of omics techniques, especially the integration of different omics tools, has greatly improved our understanding of the features of microbial biofilms, and provided in-depth knowledge on developing effective methods that are directly against deleterious biofilms. This review provides novel insights into the single use of each omics tool and the application of multiomics tools to unravel the mechanisms of biofilm formation, specific molecular phenotypes exhibited by biofilms, and biofilm control strategies. Challenges and future perspective on the integration of omics tools for biofilm studies are also addressed.

Microbial degradation of naphthenic acids using constructed wetland treatment systems: metabolic and genomic insights for improved bioremediation of process-affected water

Naphthenic acids (NAs) are a complex mixture of organic compounds released during bitumen extraction from mined oil sands that are important contaminants of oil sands process-affected water (OSPW). NAs can be toxic to aquatic organisms and, therefore, are a main target compound for OSPW. The ability of microorganisms to degrade NAs can be exploited for bioremediation of OSPW using constructed wetland treatment systems (CWTS), which represent a possible low energy and low-cost option for scalable in situ NA removal. Recent advances in genomics and analytical chemistry have provided insights into a better understanding of the metabolic pathways and genes involved in NA degradation. Here, we discuss the ecology of microbial NA degradation with a focus on CWTS and summarize the current knowledge related to the metabolic pathways and genes used by microorganisms to degrade NAs. Evidence to date suggests that NAs are mostly degraded aerobically through ring cleavage via the beta-oxidation pathway, which can be combined with other steps such as aromatization, alpha-oxidation, omega-oxidation, or activation as coenzyme A (CoA) thioesters. Anaerobic NA degradation has also been reported via the production of benzoyl-CoA as an intermediate and/or through the involvement of methanogens or nitrate, sulfate, and iron reducers. Furthermore, we discuss how genomic, statistical, and modeling tools can assist in the development of improved bioremediation practices.

Aerobic naphthenic acid-degrading bacteria in petroleum-coke improve oil sands process water remediation in biofilters: DNA-stable isotope probing reveals methylotrophy in Schmutzdecke

There is an increasing interest in treatment of oil sands process water (OSPW) via biofiltration with petroleum coke (PC) as a substratum. In fixed bed biofilters (FBBs) with PC, the dominance of anaerobic digestion of dissolved organics results in poor removal of naphthenic acids (NAs) along with a high degree of methanogenesis. In this study, the operation of FBBs was modified to improve OSPW remediation by supporting the filtering bed with aerobic naphthenic acid-degrading bacteria treating aerated OSPW (FBB_{bioaugmentation}). The results were compared with a biofilter operated under controlled conditions (FBB_control). To this end, a consortium of three aerobic NAs-degrading bacterial strains was immobilized on PC as a top layer (10 cm). These bacteria were pre-screened for growth on 15 different NAs surrogates as a sole carbon source, and for the presence of catabolic genes coding alkane hydroxylase (CYP153) and alkane monooxygenase (alkB) enzymes. The results illustrated that biofiltration in FBB_{bioaugmentation} removed 32% of classical NAs in 15 days; while in the FBB_control, degradation was limited to 19%. The degradation of fluorophore (aromatic) compounds was also improved from 16% to 39% for single ring (O_I), 22% to 29% for double ring (O_II), and 15% to 23% for three rings (O_III) compounds. DNA-Stable Isotope Probing revealed that potential hydrocarbons degraders such as Pseudomonas (inoculated), Pseudoxanthomonas (indigenous) were present up to 9.0% in the ¹³C-labelled DNA fraction. Furthermore, a high abundance of methylotrophs was observed in the Schmutzdecke, with Methylobacillus comprising more than two-third of the total community. This study shows that bioaugmentation rapidly improved OSPW remediation. Aeration mostly contributed to methane consumption in the top layer, thus minimizing its release into the environment.

Photocatalytic membrane reactors for produced water treatment and reuse: Fundamentals, affecting factors, rational design, and evaluation metrics

Treatment and reuse of produced water (PW), the largest wastewater stream generated during oil and gas production, provides a promising option to address the increasing clean water demands. High-performance treatment technologies are needed to efficiently remove the organic and inorganic contaminants in PW for fit-for-purpose applications. Photocatalytic membrane reactor (PMR) is an emerging green technology for removal of organic pollutants, photoreduction of heavy metals, photo-inactivation of bacteria, and resource recovery. This study critically reviewed the mechanisms of photocatalysis and membrane processes in PMR, factors affecting PMR performance, rational design, and evaluation metrics for PW treatment. Specifically, PW characteristics, photocatalysts properties, membranes applied, and operating conditions are of utmost importance for rational design and reliable operation of PMR. PW pretreatment to remove oil and grease, colloidal and suspended solids is necessary to reduce membrane fouling and ensure optimal PMR performance. The metrics to evaluate PMR performance were developed including light utilization, exergetic efficiency, water recovery, product water improvement, lifetime of the photocatalyst, and costs. This review also presented the research gaps and outlook for future research.

Transcriptome Analysis of Environmental Pseudomonas Isolates Reveals Mechanisms of Biodegradation of Naphthenic Acid Fraction Compounds (NAFCs) in Oil Sands Tailings

Naphthenic acid fraction compounds (NAFCs) are highly recalcitrant constituents of oil sands tailings. Although some microorganisms in the tailings can individually and synergistically metabolize NAFCs, the biochemical mechanisms that underpin these processes are hitherto unknown. To this end, we isolated two microorganisms, Pseudomonas protegens and Pseudomonas putida, from oils sands tailings and analyzed their transcriptomes to shed light on the metabolic processes employed by them to degrade and detoxify NAFCs. We identified 1048, 521 and 1434 genes that are upregulated in P. protegens, P. putida and a 1:1 co-culture of the strains, respectively. We subsequently enumerated the biochemical activities of enriched genes and gene products to reveal the identities of the enzymes that are associated with NAFC degradation. Separately, we analyzed the NAFCs that are degraded by the two pseudomonads and their 1:1 co-culture and determined the composition of the molecules using mass spectrometry. We then compared these molecular formulas to those of the cognate substrates of the enriched enzymes to chart the metabolic network and understand the mechanisms of degradation that are employed by the microbial cultures. Not only does the consortium behave differently than the pure cultures, but our analysis also revealed the mechanisms responsible for accelerated rate of degradation of NAFCs by the co-culture. Our findings provide new directions for engineering or evolving microorganisms and their consortia for degrading NAFCs more stably and aggressively.

Bacterial diversity in petroleum coke based biofilters treating oil sands process water

Adopting nature-based solutions for the bioremediation of oil sands process water (OSPW) is of significant interest, which requires a thorough understanding of how bacterial communities behave within treatment systems operated under natural conditions. This study investigates the OSPW remediation potential of delayed petroleum-coke (PC), which is a byproduct of bitumen upgrading process and is readily available at oil refining sites, in fixed-bed biofilters particularly for the degradation of naphthenic acids (NAs) and aromatics. The biofilters were operated continuously and total and active bacterial communities were studied by DNA and RNA-based amplicon sequencing in a metataxonomic fashion to extrapolate the underlying degradation mechanisms. The results of total community structure indicated a high abundance of aerobic bacteria at all depths of the biofilter, e.g., Porphyrobacter, Legionella, Pseudomonas, Planctomyces. However, redox conditions within the biofilters were anoxic (-153 to -182 mV) that selected anaerobic bacteria to actively participate in the remediation of OSPW, i.e., Ruminicoccus, Eubacterium, Faecalibacterium, Dorea. After 15 days of operation, the removal of classical NAs was recorded up to 20% whereas oxidized NAs species were poorly removed, i.e., O₃-NAs: 4.8%, O₄-NAs: 1.2%, O₅-NAs: 1.7%, and O₆-NAs: 0.5%. Accordingly, monoaromatics, diaromatics, and triaromatics were removed up to 16%, 22%, and 15%, respectively. The physiology of the identified genera suggested that the degradation in the PC-based biofilters was most likely proceeded in a scheme similar to beta-oxidation during anaerobic digestion process. The presence of hydrogenotrophic methanogens namely Methanobrevibacter and Methanomassiliicoccus and quantification of mcrA gene (2.4 × 10² to 8.7 × 10² copies/mg of PC) revealed that methane production was likely occurring in a syntrophic mechanism during the OSPW remediation. A slight reduction in toxicity was also observed. This study suggests that PC-based biofilters may offer some advantages in the remediation of OSPW; however, the production of methane could be of future concerns if operated at field-scale.

Treatment of oil sands process water using petroleum coke: Field pilot

This is the first large-scale field pilot study that examined the feasibility and effectiveness of petroleum coke (PC), produced by a Fluid Coking Process, as an adsorbent for oil sands process water (OSPW) treatment. The pilot program consisted of an inline series of two reactors (pipeline reactor 1, and batch reactor 2) and lasted for approximately 4 months. The quality of treated OSPW as a function of residence time in the PC deposit under natural climatic conditions was assessed by looking at changes in organic compounds (acid extractable fraction (AEF), dissolved organic carbon (DOC), etc.), vanadium, and other trace element concentrations, major ions, conductivity, total suspended solids (TSS), pH and toxicity. The results indicated that the AEF adsorption by PC followed pseudo-second order kinetics and the overall combined removal efficiency of AEF was greater than 80%. Reactor 1 showed higher AEF removal than Reactor 2. DOC decreased about 50% after 4 weeks of retention in the PC deposit. An increase of vanadium concentration after PC contact indicated that vanadium leaching occurred. However, with increased residence time in the PC deposit, vanadium concentration decreased in the cells and tanks by 42% and 98%, respectively. Filtration through the PC deposit reduced the TSS in OSPW to less than laboratory detectable limits. Unlike untreated OSPW, treated OSPW did not show an acute toxic response based on whole effluent toxicity testing using trout, zooplankton, and bacteria. This study demonstrated that PC adsorption is a potentially commercially viable technology for highly efficient treatment of OSPW.

Developments in Molecular Level Characterization of Naphthenic Acid Fraction Compounds Degradation in a Constructed Wetland Treatment System

The reclamation of oil sands process-affected water (OSPW) is a matter of environmental importance because of the aquatic toxicity to biota. This study describes refinements in advanced analytical methods to assess the performance of biological treatment systems for OSPW, such as constructed wetland treatment systems (CWTSs). Assessment of treatment efficiency by measurement of the degradation of naphthenic acid fraction compounds (NAFCs) in OSPW is challenging in CWTS due to potentially interfering constituents such as humic acids, organic acids, salts, and hydrocarbons. Here we have applied a previous weak anion exchange (WAX) solid-phase extraction (SPE) method and high-resolution Orbitrap-mass spectrometry (MS) to remove major interferences from the NAFC analysis. The refinements in data processing employing principal component analysis (PCA) indicates that the relative abundance of NAFCs decreased with time in the treated OSPW relative to the untreated OSPW. The most saturated NAFCs with higher carbon numbers were relatively more degraded as compared to unsaturated NAFCs. The use of Kendrick plots and van Krevelen plots for assessment of the performance of the CWTS is shown to be well-suited to detailed monitoring of the complex composition of NAFCs as a function of degradation. The developments and application of analytical methods such as the WAX SPE method and high-resolution Orbitrap-MS are demonstrated as tools enabling the advancement of CWTS design and optimization, enabling passive or semi-passive water treatment systems to be a viable opportunity for OSPW treatment.