Stable isotopes reveal the formation diversity of humic substances derived from different cotton straw-based materials

Mechanism underlying effects of cellulose-degrading microbial inoculation on amino acid degradation and biosynthesis during composting

Amino acids are essential organic compounds in composting products. However, the mechanism underlying the amino acid metabolism during composting remains unclear. This study aims at exploring the impacts of inoculating cellulose-degrading microbes on amino acid metabolism during composting with mulberry branches and silkworm excrements. Cellulose-degrading microbial inoculation enhanced amino acid degradation by 18%-43% by increasing protease and sucrase activities and stimulating eight amino acid degradation pathways from the initial to thermophilic phases, with Enterococcus, Saccharomonospora, Corynebacterium being the dominant bacterial genera, but stimulated amino acid production by 54% by increasing sucrase and urease activities, decreasing β-glucosidase activities, and stimulating twenty-two amino acid synthesis pathways at the mature phase, with Thermobifida, Devosia, and Cellulosimicrobium being the dominant bacterial genera. The results suggest that cellulose-degrading microbial inoculation enhances amino acid degradation from the initial to thermophilic phases and biosynthesis at the mature phase, thereby improving the quality of organic fertilizer.

Continuous planting of euhalophyte Suaeda salsa enhances microbial diversity and multifunctionality of saline soil

Halophyte-based remediation emerges as a novel strategy for ameliorating saline soils, offering a sustainable alternative to conventional leaching methods. While bioremediation is recognized for its ability to energize soil fertility and structure, the complex interplays among plant traits, soil functions, and soil microbial diversity remain greatly unknown. Here, we conducted a 5-year field experiment involving the continuous cultivation of the annual halophyte Suaeda salsa in saline soils to explore soil microbial diversity and their relationships with plant traits and soil functions. Our findings demonstrate that a decline in soil salinity corresponded with increases in the biomass and seed yield of S. salsa, which sustained a consistent seed oil content of approximately 22% across various salinity levels. Significantly, prolonged cultivation of halophytes substantially augmented soil microbial diversity, particularly from the third year of cultivation. Moreover, we identified positive associations between soil multifunctionality, seed yield, and taxonomic richness within a pivotal microbial network module. Soils enriched with taxa from this module showed enhanced multifunctionality and greater seed yields, correlating with the presence of functional genes implicated in nitrogen fixation and nitrification. Genomic analysis suggests that these taxa have elevated gene copy numbers of crucial functional genes related to nutrient cycling. Overall, our study emphasizes that the continuous cultivation of S. salsa enhances soil microbial diversity and recovers soil multifunctionality, expanding the understanding of plant-soil-microbe feedback in bioremediation.IMPORTANCEThe restoration of saline soils utilizing euhalophytes offers a viable alternative to conventional irrigation techniques for salt abatement and soil quality enhancement. The ongoing cultivation of the annual Suaeda salsa and its associated plant traits, soil microbial diversity, and functionalities are, however, largely underexplored. Our investigation sheds light on these dynamics, revealing that cultivation of S. salsa sustains robust plant productivity while fostering soil microbial diversity and multifunctionality. Notably, the links between enhanced soil multifunctionality, increased seed yield, and network-dependent taxa were found, emphasizing the importance of key microbial taxa linked with functional genes vital to nitrogen fixation and nitrification. These findings introduce a novel understanding of the role of soil microbes in bioremediation and advance our knowledge of the ecological processes that are vital for the rehabilitation of saline environments.

The co-inoculation of Trichoderma viridis and Bacillus subtilis improved the aerobic composting efficiency and degradation of lignocellulose

The aim of this study was to reveal the mechanism by which co-inoculation with both Trichoderma viridis and Bacillus subtilis improved the efficiency of composting and degradation of lignocellulose in agricultural waste. The results showed that co-inoculation with Trichoderma and Bacillus increased abundance of Bacteroidota to promote the maturation 7 days in advance. Galbibacter may be a potential marker of co-inoculation composting efficiency compost. The compost became dark brown, odorless, and had a carbon to nitrogen ratio of 16.40 and a pH of 8.2. Moreover, Actinobacteriota and Firmicutes still dominated the degradation of lignocellulose following inoculation with Trichoderma or Bacillus 35 days after composting. Bacterial function prediction analysis showed that carbohydrate metabolism was the primary metabolic pathway. In conclusion, co-inoculation with Trichoderma and Bacillus shortened the composting cycle and accelerated the degradation of lignocellulose. These findings provide new strategies for the efficient use of agricultural waste to produce organic fertilizers.

The native SOC increase in woodland and lawn soil amended with biochar surpassed greenhouse - A seven-year field trial

The effects of applying biochar with the same characteristics and at the same dose on the storage, composition, and underlying mechanisms of native organic carbon (n-SOC) dynamics in different ecosystems are still unclear. This study aimed to explore the effects of biochar amendment (7 years) on carbon sequestration and the n-SOC pools of woodland, lawn, and greenhouse soils. The 'water floating method' and improved 'combustion loss method' were used in this study to quantify residual biochar in soil. The results showed that after 7 years, the amount of biochar left in woodland, lawn, and greenhouse soils was 67.12 %, 87.50 %, and 88.13 % of the initial applied amount, respectively. And the n-SOC content increased approximately 2.07, 3.07, and 0.22 times, respectively, mainly due to increases in the native soil humin (n-HM) content of the soil. Biochar also increased the proportion of large aggregates in woodland and lawn soil and increased the t-SOC content of aggregates in each particle size fraction. Additionally, biochar increased the t-SOC of greenhouse soil aggregates but had no significant effect on the distribution of aggregates. The presence of biochar increased native soil easily oxidizable carbon (n-EOC) and microbial biomass carbon (n-MBC) in all three ecosystems. And increases in n-MBC in woodland and lawn soils occurred, which promoted the depletion of native soil hot water dissolvable organic carbon (n-HWOC) and increased CO2 emissions. Furthermore, the microbial respiration quotient (qCO2) of woodland and greenhouse soils was reduced by biochar, and that of lawn soil was unchanged. The carbon use efficiency (CUE) of lawn soils were reduced, possibly because biochar reduced the abundance of soil fungi/bacteria (F/B). In summary, the 7-year application of biochar significantly enhanced the n-SOC content in woodland and lawn soils, mainly due to an increase in humin, while a weaker enhancement was observed in greenhouse soil.

Trade-offs in carbon-degrading enzyme activities limit long-term soil carbon sequestration with biochar addition

Biochar amendment is one of the most promising agricultural approaches to tackle climate change by enhancing soil carbon (C) sequestration. Microbial-mediated decomposition processes are fundamental for the fate and persistence of sequestered C in soil, but the underlying mechanisms are uncertain. Here, we synthesise 923 observations regarding the effects of biochar addition (over periods ranging from several weeks to several years) on soil C-degrading enzyme activities from 130 articles across five continents worldwide. Our results showed that biochar addition increased soil ligninase activity targeting complex phenolic macromolecules by 7.1%, but suppressed cellulase activity degrading simpler polysaccharides by 8.3%. These shifts in enzyme activities explained the most variation of changes in soil C sequestration across a wide range of climatic, edaphic and experimental conditions, with biochar-induced shift in ligninase:cellulase ratio correlating negatively with soil C sequestration. Specifically, short-term (<1 year) biochar addition significantly reduced cellulase activity by 4.6% and enhanced soil organic C sequestration by 87.5%, whereas no significant responses were observed for ligninase activity and ligninase:cellulase ratio. However, long-term (≥1 year) biochar addition significantly enhanced ligninase activity by 5.2% and ligninase:cellulase ratio by 36.1%, leading to a smaller increase in soil organic C sequestration (25.1%). These results suggest that shifts in enzyme activities increased ligninase:cellulase ratio with time after biochar addition, limiting long-term soil C sequestration with biochar addition. Our work provides novel evidence to explain the diminished soil C sequestration with long-term biochar addition and suggests that earlier studies may have overestimated soil C sequestration with biochar addition by failing to consider the physiological acclimation of soil microorganisms over time.

Bioaugmentation on humification during co-composting of corn straw and biogas slurry

In order to increase the nutrients and humic acid (HA) contents of corn straw (CS) derived organic fertilizer and recover resources from biogas slurry (BS) simultaneously, the co-composting of CS and BS was carried out with the addition of biochar and microbial agents including lignocellulose degrading and ammonia assimilating bacteria. The results showed that 1 kg straw could treat 2.5 L BS by recovering nutrients and bio-heat introduced evaporation. The bioaugmentation strengthened both the polyphenol and Maillard humification pathways by promoting the polycondensation of precursors (reducing sugars, polyphenols, and amino acids). HA obtained in the microbial-enhanced group (20.83 g/kg), biochar-enhanced group (19.34 g/kg), and combined-enhanced group (21.66 g/kg) were significantly higher than that in the control group (16.26 g/kg). The bioaugmentation achieved directional humification and reduced the loss of C and N by promoting the CN formation of HA. The humified co-compost had nutrient slow-release effect in agricultural production.

Exogenous microbial antagonism affects the bioaugmentation of humus formation under different inoculation using Trichoderma reesei and Phanerochaete chrysosporium

This study was aimed at exploring the effect of antagonism of Trichoderma reesei (T.r) and Phanerochaete chrysosporium (P.c) on humification during fermentation of rice (RS) and canola straw (CS). Results showed that exogeneous fungi accelerated straw degradation and enzyme activities of CMCase, xylanase and LiP. P.c inhibited the activity of LiP when co-existing with T.r beginning, it promoted the degradation of lignin and further increased the production of humus-like substances (HLS) and humic-like acid (HLA) in later fermentation when nutrients were insufficient. The HLS of RTP was 54.9 g/kg RS, higher than the other treatments, and displayed more complex structure and higher thermostability. Brucella and Bacillus were the main HLA bacterial producers. P.c was the HLA fungal producer, while T.r assisted FLA and polyphenol transformation. Therefore, RTP was recommended to advance technologies converting crop straw into humus resources.

Variation in community structure and network characteristics of spent mushroom substrate (SMS) compost microbiota driven by time and environmental conditions

Global mushroom production is growing rapidly, raising concerns about polluting effects of spent mushroom substrate (SMS) and interest in uses in composts. In this study, SMS composting trials and high-throughput sequencing were carried out to investigate to better understand how the structure, co-occurrence patterns, and functioning of bacterial and fungal communities vary through compost time and across environmental conditions. The results suggested that both bacterial and fungal microbiota displayed significant variation in community composition across different composting stages. Enzyme activity levels showed both directional and fluctuating changes during composting, and the activity dynamics of carboxymethyl cellulase, polyphenol oxidase, laccase, and catalase correlated significantly with the succession of microbial community composition. The co-occurrence networks are "small-world" and modularized and the topological properties of each subnetwork were significantly influenced by the environmental factors. Finally, seed germination and seedling experiments were performed to verify the biosafety and effectiveness of the final composting products.

Effects of exogenous cellulose-degrading bacteria on humus formation and bacterial community stability during composting

This study aimed to reveal the potential mechanism of influence exogenous cellulose-degrading bacteria (ECDB) exerted on humus synthesis during the co-composting of corn straw and cattle manure. By measuring the changes in physicochemical factors and bacterial communities, it was revealed that inoculation with ECDB enhanced the driving force of cellulose degradation and humus synthesis. ECDB not only directly participated in cellulose degradation as degrading bacteria, but also changed the bacterial community succession, and increased the abundance of bacterial communities associated with cellulose degradation. The results showed that ECDB stimulated the potential functions and interactions of bacterial communities. Structural equation modeling confirmed that ECDB acted mainly as a bioactivator to promote humus formation in co-composting of corn straw and cattle manure. Taken together, these findings offered new strategies which can be effectively utilized to increase the efficiency and quality of corn straw composting.

Bioaugmentation mechanism on humic acid formation during composting of food waste

In this study, microbes were added to food waste compost in order to investigate the bioaugmentation mechanism of Humic acid (HA) formation. Thermogravimetric analysis, structural equation model, Fourier transform infrared spectroscopy and statistical analysis were utilized to explain the bioaugmentation mechanism. The results showed that bioaugmentation increased humification rate and degree. Bioaugmentation not only promoted the formation of aromatic structures and CC bonds but also brought different change orders of functional groups in HA. The HA obtained in bioaugmentation group (BA, 7.51 g/kg) was significantly higher compared to the control group (CK, 2.37 g/kg). Similarly, the HA/FA of BA (1.90) was also higher than that of CK (0.62), and peaked at 2.34 on day 40. The polyphenol humification pathway played a major role regardless of the addition of inoculant. However, the exogenous microbes promoted protein and carbohydrate degradation in the initial stage, and the abundance of precursors (amino acids and reducing sugars) enhanced both Maillard and polyphenol humification pathways. When polyphenol was insufficient in later stage, bioaugmentation mainly embodied in the strengthening of Maillard humification pathway. This finding benefited the practice of directional humification process of food waste composting.

Suppression mechanism of model humic constituents on laccase-enabled 17β-estradiol oxidation and oligomerization

Humic constituents (HCs) are ubiquitous in the aquatic ecosystems, and contain various functional groups that seriously impact the conversion of 17β-estradiol (17β-E2) by fungal laccase. The purpose of this study was to explore the influencing mechanism of HCs on Trametes versicolor laccase-enabled 17β-E2 oxidation and oligomerization. Herein, T. versicolor-secreted laccase could rapidly convert 99.2% of 17β-E2 (rate constant = 3.7 × 10^-2 min^-1, half-life = 18.7 min) into multifarious oligomers at 25 °C and pH 5.0, by phenolic radical-caused C-C and/or C-O self-linking routes, whereas HCs with O-phenolic hydroxyl groups (O-p-OH, i.e., catechol, pyrogallol, gallic acid, and caffeic acid) dramatically suppressed 17β-E2 oligomerization. Compared with HC-free, 17β-E2 rate constants weakened 6.3-15.8 fold in the presence of HCs containing O-p-OH. It is largely because the O-p-OH was preferentially oxidized by T. versicolor laccase to create the electrophilic O-quinone monomers/oligomers. These unstable reactive O-quinone intermediates strongly reversed 17β-E2 phenolic radicals to their monomeric molecules via two proton-transfer versus two electron-transfer channels, thus intercepting 17β-E2 oxidation and oligomerization. These findings highlight new insights into the effect of HCs containing O-p-OH on T. versicolor laccase-started 17β-E2 conversion, which is beneficial to re-understanding the fate and geochemical behavior of 17β-E2 in water.

Synergistic effects of crop residue and microbial inoculant on soil properties and soil disease resistance in a Chinese Mollisol

The soil-borne disease caused by Fusarium graminearum seriously affects the corn quality. Straw can greatly improve soil quality, but the effect is limited by its nature and environmental factors. This study explored the impact of straw-JF-1(biocontrol bacteria) combination on soil environment and soil disease resistance. The results showed that the combined treatment increased the proportion of soil large and small macro-aggregates by 22.50 and 3.84%, with soil organic carbon (SOC) content by 16.18 and 16.95%, respectively. Compared to treatment with returning straw to the field alone, the straw-JF-1 combination increased the soil content of humic acid, fulvic acid, and humin by 14.06, 5.50, and 4.37%, respectively. Moreover, A metagenomics showed that returning straw to the field alone increased the abundance of disease-causing fungi (Fusarium and Plectosphaerella), however, the straw-JF-1 combination significantly suppressed this phenomenon as well as improved the abundance of probiotic microorganisms such as Sphingomonas, Mortierella, Bacillus, and Pseudomonas. Functional analysis indicated that the combination of straw and JF-1 improved some bacterial functions, including inorganic ion transport and metabolism, post-translational modification/protein turnover/chaperones and function unknown, fungal functions associated with plant and animal pathogens were effectively inhibited. Pot experiments showed that the straw-JF-1 combination effectively inhibited the Fusarium graminearum induced damage to maize seedlings. Therefore, the combination of straw and JF-1 could be a practical method for soil management.

Identifying the role of exogenous amino acids in catalyzing lignocellulosic biomass into humus during straw composting

This study was aimed at exploring the mechanism of promoting humus formation by the addition of exogenous amino acids. Amino acids not only participated in the synthesis of humus directly as precursors, but also changed the functions of bacterial communities. The composition and diversity of bacterial community changed with the addition of amino acids. The ability of bacterial community to degrade lignocellulose was enhanced, which provided precursors for humus synthesis. The key bacteria for humus formation and organic matter transformation were identified using random forests. These bacteria showed growth advantage with the addition of amino acids. The results showed that exogenous amino acids tended to transform organic matter and synthesize humus. Variance partitioning analysis confirmed that the bacterial community was the driving force of humus synthesis. These results were further verified by the structural equation model. These findings provided new ideas and understanding for straw waste composting.

Specified Dosages of Biochar Application Not Impact Native Organic Carbon but Promote a Positive Effect on Native Humic Acid in Humicryepts Soil

Biochar is considered to have potential use in carbon (C) sequestration and has been widely used in soil amendment. Humic substances (HSs), assigned as the stable organic C, have obvious agronomic benefits. However, the response mechanisms of these carbonaceous substances to biochar are unclear in biochar-amended soils. In a two-year experiment, the δ13C technique was employed to trace the fate of the biochar-derived C in HSs and evaluate the effects of four treatments, including no biochar control (CK) and biochar addition at dosages of 6 t ha−1 (BC6), 12 t ha−1 (BC12), and 24 t ha−1 soil (BC24), on soil organic carbon (SOC) and HSs. Compared to CK, biochar application significantly improved total SOC contents and the C pool index, whereas the C labile index declined. Humic acid (HA) and humin were distinctly enhanced in bulk soil. Moreover, the aliphaticity was intensified in the chemical composition of HA. In particular, native HA contents substantially increased by 16.30–55.95%. Biochar-applied C of 4.08–6.43% was finitely involved in HA formation over the two years, which resulted in a genetic relationship between soil HA and biochar to some extent. The low dosages of biochar at 6 t ha−1, 12 t ha−1 and 24 t ha−1 did not obviously affect native SOC contents. Moreover, BC24 had less of an effect on HA formation compared to BC6 and BC12, but had the highest SOC. These results demonstrate that biochar application can improve SOC stocks, reduce C instability and promote HSs formation, and they suggest that determining and keeping an optimum dosage of biochar application can represent an effective strategy (i.e., not only sequestrate C, but also improve soil quality), which is beneficial to sustainability in the ecological environment and agriculture.