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Lin YZ, Chen QQ, Qiu YF, Xie RR, Zhang H, Zhang Y, Li JB, Han YH. Spartina alterniflora invasion altered phosphorus retention and microbial phosphate solubilization of the Minjiang estuary wetland in southeastern China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 358:120817. [PMID: 38593740 DOI: 10.1016/j.jenvman.2024.120817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 01/27/2024] [Accepted: 04/01/2024] [Indexed: 04/11/2024]
Abstract
Spartina alterniflora invasion is considered a critical event affecting sediment phosphorus (P) availability and stock. However, P retention and microbial phosphate solubilization in the sediments invaded with or without S. alterniflora have not been fully investigated. In this study, a sequential fractionation method and high-throughput sequencing were used to analyze P transformation and the underlying microbial mechanisms in the sediments of no plant (NP) zone, transition (T) zone, and plant (P) zone. Results showed that except for organic phosphate (OP), total phosphate (TP), inorganic phosphate (IP), and available phosphate (AP) all followed a significant decrease trend from the NP site to the T site, and to the P site. The vertical decrease of TP, IP, and AP was also observed with an increase in soil depth. Among the six IP fractions, Fe-P, Oc-P, and Ca10-P were the predominant forms, while the presence of S. alterniflora resulted in an obvious P depletion except for Ca8-P and Al-P. Although S. alterniflora invasion did not significantly alter the alpha diversity of phosphate-solubilizing bacteria (PSB) harboring phoD gene, several PSB belonging to p_Proteobacteria, p_Planctomycetes, and p_Cyanobacteriota showed close correlations with P speciation and IP fractions. Further correlation analysis revealed that the reduced soil pH, soil TN and soil EC, and the increased soil TOC mediated by the invasion of S. alterniflora also significantly correlated to these PSB. Overall, this study elucidates the linkage between PSB and P speciation and provides new insights into understanding P retention and microbial P transformation in the coastal sediment invaded by S. alterniflora.
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Affiliation(s)
- Yan-Zhen Lin
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Qi-Qi Chen
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Yi-Fan Qiu
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China; College of Carbon Neutral Modem Industry, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Rong-Rong Xie
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Hong Zhang
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Yong Zhang
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Jia-Bing Li
- College of Carbon Neutral Modem Industry, Fujian Normal University, Fuzhou, 350117, Fujian, China; Fujian Key Laboratory of Pollution Control and Resource Reuse, Fuzhou, 350117, Fujian, China.
| | - Yong-He Han
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
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2
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Guo M, Zhang J, Wang Y, Chen H, Lv J, Kong D, Jin Z, Ke T, Zhang H, Luo J, Yang M. Determination of mycobiota and aflatoxin contamination in commercial bee pollen from eight provinces and one autonomous region of China. Int J Food Microbiol 2024; 411:110511. [PMID: 38043476 DOI: 10.1016/j.ijfoodmicro.2023.110511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Revised: 11/22/2023] [Accepted: 11/25/2023] [Indexed: 12/05/2023]
Abstract
The co-occurrence of fungi and mycotoxins in various foods has been frequently reported in many countries, posing a serious threat to the health and safety of consumers. In this study, the mycobiota in five types of commercial bee pollen samples from China were first revealed by DNA metabarcoding. Meanwhile, the content of total aflatoxins in each sample was investigated by high-performance liquid chromatography with fluorescence detection. The results demonstrated that Cladosporium (0.16 %-89.29 %) was the most prevalent genus in bee pollen, followed by Metschnikowia (0-81.12 %), unclassified genus in the phylum Ascomycota (0-81.13 %), Kodamaea (0-73.57 %), and Penicillium (0-36.13 %). Meanwhile, none of the assayed aflatoxins were determined in the 18 batches of bee pollen samples. In addition, the fungal diversity, community composition, and trophic mode varied significantly among five groups. This study provides comprehensive information for better understanding the fungal communities and aflatoxin residues in bee pollen from different floral origins in China.
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Affiliation(s)
- Mengyue Guo
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Jing Zhang
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Yunyun Wang
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Hubiao Chen
- School of Chinese Medicine, Hong Kong Baptist University, 999077, Hong Kong, China
| | - Jianxin Lv
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Dandan Kong
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Ziyue Jin
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Tongwei Ke
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
| | - Hongkun Zhang
- Sichuan Haoyun Pharmaceutical Co., Ltd., Guangyuan 628000, China
| | - Jiaoyang Luo
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China.
| | - Meihua Yang
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China; NMPA Key Laboratory for Quality Control of Traditional Chinese Medicine (Chinese Materia Medica and Prepared Slices), Lanzhou 730070, China.
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3
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Ren B, Meng M, Yu J, Ma X, Li D, Li J, Yang J, Bai L, Feng Y. Invasion by Cenchrus spinifex changes the soil microbial community structure in a sandy grassland ecosystem. Heliyon 2023; 9:e20860. [PMID: 37920531 PMCID: PMC10618509 DOI: 10.1016/j.heliyon.2023.e20860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 10/07/2023] [Accepted: 10/09/2023] [Indexed: 11/04/2023] Open
Abstract
Continuous nitrogen deposition increases the nitrogen content of terrestrial ecosystems and alters the soil nitrogen cycling process. Invasive plants have strong environmental adaptability, which can not only affect the composition and diversity of soil microbial community but also significantly affect the transformation process of soil nitrogen, leading to successful invasion. Currently, research on invasive plant soil ecosystems mainly focused on changes in soil nutrients and soil microorganisms. As an invasive annual grass weed with strong ecological adaptability, the impact of Cenchrus spinifex at different growth periods on soil environment and soil microbial structure composition and diversity in sandy grassland ecosystems is still unclear. In this study, soil samples were collected from four habitats with different degrees of invasion in situ during the vegetation and reproductive growth periods of Cenchrus spinifex. High-throughput sequencing and qPCR technology were used to analyze the changes in the composition, structure and diversity characteristics of the soil microbial communities during Cenchrus spinifex invasion. The results indicated that Cenchrus spinifex invasion had different effects on the soil environment at different growth periods, and Cenchrus spinifex had a preference for the utilization of ammonium nitrogen during vegetation growth period. Moreover, Cenchrus spinifex invasion significantly changed the composition and structure of soil bacterial communities, and the response of soil bacterial and fungal communities to the invasion was inconsistent. Additionally, the bacterial network was more stable than the fungal network. At different growth periods, Cenchrus spinifex had a significant impact on the key microbial communities of soil nitrogen cycling. The invasion increased the abundance of nifH and AOA-amoA, while decreased the abundance of AOA-amoB. Alkaline hydrolyzed nitrogen, total nitrogen and total phosphorus content were key factors that affect vegetation growth period and change the key microbial communities of nitrogen cycling. Alkaline hydrolyzed nitrogen, total phosphorus and organic carbon were key factors in reproductive growth period that alter the nitrogen cycling of key microbial communities.
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Affiliation(s)
- Baihui Ren
- Corresponding author. No. 120 Dongling Road, Shenhe District, Shenyang, Liaoning, 110866, China.
| | | | - Jianxin Yu
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Xinwei Ma
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Daiyan Li
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Jiahuan Li
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Jiyun Yang
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Long Bai
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
| | - Yulong Feng
- Shenyang Agricultural University, Shenyang, Liaoning, 110866, China
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Zhang M, Wang K, Shi C, Li X, Qiu Z, Shi F. Responses of Fungal Assembly and Co-Occurrence Network of Rhizosphere Soil to Amaranthus palmeri Invasion in Northern China. J Fungi (Basel) 2023; 9:jof9050509. [PMID: 37233220 DOI: 10.3390/jof9050509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/07/2023] [Accepted: 04/23/2023] [Indexed: 05/27/2023] Open
Abstract
The interaction between invasive plants and soil microbial communities is critical for plant establishment. However, little is known about the assembly and co-occurrence patterns of fungal communities in the rhizosphere soil of Amaranthus palmeri. The soil fungal communities and co-occurrence networks were investigated in 22 invaded patches and 22 native patches using high-throughput Illumina sequencing. Despite having little effect on alpha diversity, plant invasion significantly altered the composition of the soil fungal community (ANOSIM, p < 0.05). Fungal taxa associated with plant invasion were identified using linear discriminant analysis effect size (LEfSe). In the rhizosphere soil of A. palmeri, Basidiomycota was significantly enriched, while Ascomycota and Glomeromycota were significantly reduced when compared to native plants. At the genus level, the invasion of A. palmeri dramatically increased the abundance of beneficial fungi and potential antagonists such as Dioszegia, Tilletiopsis, Colacogloea, and Chaetomium, while it significantly decreased the abundance of pathogenic fungi such as Alternaria and Phaeosphaeria. Plant invasion reduced the average degree and average path length, and increased the modularity value, resulting in a less complex but more effective and stable network. Our findings improved the knowledge of the soil fungal communities, network co-occurrence patterns, and keystone taxa in A. palmeri-invaded ecosystems.
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Affiliation(s)
- Mei Zhang
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Kefan Wang
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Cong Shi
- School of Environmental Science and Engineering, Tiangong University, Tianjin 300387, China
| | - Xueying Li
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Zhenlu Qiu
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Fuchen Shi
- Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China
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5
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Zhang G, Jia J, Zhao Q, Wang W, Wang D, Bai J. Seasonality and assembly of soil microbial communities in coastal salt marshes invaded by a perennial grass. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 331:117247. [PMID: 36642049 DOI: 10.1016/j.jenvman.2023.117247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/29/2022] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
Plant invasion profoundly changes the microbial-driven processes in the ecosystem; however, the seasonality of soil microbial communities and their assembly under plant invasion is poorly understood. In this study, coastal salt marshes with native Suaeda salsa (L.) Pall. and exotic Spartina alterniflora Loisel. in the Yellow River Estuary, North China, were selected, and soil bacterial and fungal communities and their seasonal variance were characterized by metabarcoding sequencing of the 16S rRNA gene and ITS2 regions, respectively. The importance of deterministic and stochastic processes in shaping bacterial and fungal seasonal assembly was explored by the null model. Results showed that soil microbes exhibited the lowest diversities in spring, while their diversity significantly improved in summer and autumn with the increase in organic carbon and nitrogen content in soils. Strong seasonal variances in microbial communities were observed, but plant invasion reduced the seasonal variation strength of soil bacteria. For the microbial assembly, the seasonal variability of soil bacterial community was mainly controlled by homogeneous selection, whereas soil fungal community was dominantly structured by stochastic processes. Among the selected variables, soil pH was the key abiotic factor driving the seasonal changes in bacteria and fungi. The microbial function annotation derived from taxonomy-based inference suggested that carbon metabolism was relatively stronger in spring, but nitrogen and sulfur metabolism increased evidently in summer and autumn, and the proportion of saprophytic fungi increased substantially after plant invasion. The seasonal turnover of bacterial and fungal groups were tightly associated with the seasonal variation in soil carbon and nitrogen contents. Collectively, these findings reveal the strong seasonal variability of different soil microbial constituents in plant-invaded coastal salt marshes and suggest the linkage between microbial community assembly and microbial-mediated functions in the context of plant invasions.
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Affiliation(s)
- Guangliang Zhang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China; Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, 519087, PR China
| | - Jia Jia
- Henan Key Laboratory of Ecological Environment Protection and Restoration of Yellow River Basin, Yellow River Institute of Hydraulic Research, Zhengzhou, 45003, PR China
| | - Qingqing Zhao
- Shandong Provincial Key Laboratory of Applied Microbiology, Ecology Institute, Qilu University of Technology (Shandong Academy of Sciences), Ji'nan, 250103, PR China
| | - Wei Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China
| | - Dawei Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China
| | - Junhong Bai
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China; Shandong Key Laboratory of Eco-Environmental Science for the Yellow River Delta, Binzhou University, Binzhou, 256600, PR China.
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6
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Nie S, Mo S, Gao T, Yan B, Shen P, Kashif M, Zhang Z, Li J, Jiang C. Coupling effects of nitrate reduction and sulfur oxidation in a subtropical marine mangrove ecosystem with Spartina alterniflora invasion. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 862:160930. [PMID: 36526186 DOI: 10.1016/j.scitotenv.2022.160930] [Citation(s) in RCA: 35] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 12/10/2022] [Accepted: 12/10/2022] [Indexed: 06/17/2023]
Abstract
The mangrove ecosystem has a high nitrate reduction capacity, which significantly alleviates severe nitrogen pollution. However, current research on nitrate reduction mechanisms in the mangrove ecosystem is limited. Furthermore, Spartina alterniflora invasion has disrupted the balance of the mangrove ecosystem and the effect of S. alterniflora on nitrate reduction has not yet been fully elucidated. Nitrate reduction was comprehensively investigated in a subtropical mangrove ecosystem in this study, which has been invaded by S. alterniflora for 40 years. Results showed that S. alterniflora significantly increased the relative and absolute abundance of nitrate reduction genes, especially nirS (nitrite reductase), in the mangrove ecosystem. Dissimilatory nitrate reduction to ammonium was the main pathway of nitrate reduction in the mangrove ecosystem. Nitrate reduction was mainly performed by Desulfobacterales and occurred in the shallow layers (0-10 cm) of mangrove sediments. A strong positive correlation was found between nitrate reduction and sulfur oxidation (especially sulfide oxidation), and the sulfide content was significantly positively correlated with the relative abundance of nitrate reduction genes. Moreover, 207 metagenomic assembled genomes (MAGs) were constructed, including 50 MAGs with high numbers (≥ 10) of nitrate reduction genes. This finding indicates that the dominant microbes had strong nitrate reduction potential in mangrove sediments. Our findings highlight the impact of S. alterniflora invasion on nitrate reduction in a subtropical marine mangrove ecosystem. This study provides new insights into our understanding of nitrogen pollution control and contributes to the exploration of new nitrogen-degrading microbes in mangrove ecosystems.
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Affiliation(s)
- Shiqing Nie
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China; State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shuming Mo
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China; National Engineering Research Center for Non-Food Biorefinery, State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Key Laboratory of Bio-refinery, Guangxi Research Center for Biological Science and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Tingwei Gao
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai 536000, China
| | - Bing Yan
- National Engineering Research Center for Non-Food Biorefinery, State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Key Laboratory of Bio-refinery, Guangxi Research Center for Biological Science and Technology, Guangxi Academy of Sciences, Nanning 530007, China; Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai 536000, China
| | - Peihong Shen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Muhammad Kashif
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China; National Engineering Research Center for Non-Food Biorefinery, State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Key Laboratory of Bio-refinery, Guangxi Research Center for Biological Science and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Zufan Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Jinhui Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Chengjian Jiang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning 530004, China; National Engineering Research Center for Non-Food Biorefinery, State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Key Laboratory of Bio-refinery, Guangxi Research Center for Biological Science and Technology, Guangxi Academy of Sciences, Nanning 530007, China.
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7
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Ye G, Chen J, Yang P, Hu HW, He ZY, Wang D, Cao D, Zhang W, Wu B, Wu Y, Wei X, Lin Y. Non-native Plant Species Invasion Increases the Importance of Deterministic Processes in Fungal Community Assembly in a Coastal Wetland. MICROBIAL ECOLOGY 2022:10.1007/s00248-022-02144-z. [PMID: 36372840 DOI: 10.1007/s00248-022-02144-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
Abstract
Fungal communities are essential to the maintenance of soil multifunctionality. Plant invasion represents a growing challenge for the conservation of soil biodiversity across the globe, but the impact of non-native species invasion on fungal diversity, community structure, and assembly processes remains largely unknown. Here, we examined the diversity, community composition, functional guilds, and assembly process of fungi at three soil depths underneath a native species, three non-native species, and a bare tidal flat from a coastal wetland. Plant species was more important than soil depth in regulating the diversity, community structure, and functional groups of fungi. Non-native species, especially Spartina alterniflora, increased fungal diversity, altered fungal community structure, and increased the relative abundance of saprotrophic and pathogenic fungi in coastal wetland soils. Stochastic processes played a predominant role in driving fungal community assembly, explaining more than 70% of the relative contributions. However, compared to a native species, non-native species, especially S. alterniflora, reduced the relative influence of stochastic processes in fungal community assembly. Collectively, our results provide novel evidence that non-native species can increase fungal diversity, the relative abundance of saprotrophic and pathogenic fungi, and deterministic processes in the assembly of fungi in coastal wetlands, which can expand our knowledge of the dynamics of fungal communities in subtropical coastal wetlands.
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Affiliation(s)
- Guiping Ye
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Jianming Chen
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Ping Yang
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Hang-Wei Hu
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, VIC 3010, Melbourne, Australia
| | - Zi-Yang He
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, VIC 3010, Melbourne, Australia
| | - Dan Wang
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Dingding Cao
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Wenbin Zhang
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Bingyu Wu
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Yonghong Wu
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Xiangying Wei
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China.
| | - Yongxin Lin
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China.
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8
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Zhang G, Bai J, Tebbe CC, Huang L, Jia J, Wang W, Wang X, Yu L, Zhao Q. Plant invasion reconstructs soil microbial assembly and functionality in coastal salt marshes. Mol Ecol 2022; 31:4478-4494. [PMID: 35789059 DOI: 10.1111/mec.16600] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 06/25/2022] [Accepted: 06/30/2022] [Indexed: 11/27/2022]
Abstract
Microbiologically driven ecosystem processes can be profoundly altered by alien plant invasions. The understanding of ecological mechanisms orchestrating different microbial constituents and their roles in emerging functional properties under plant invasions is limited. Here, we investigated soil microbial communities and functions using high-throughput amplicon sequencing and GeoChip technology, respectively, along a chronological gradient of smooth cordgrass invasion in salt marshes located in the Yellow River Estuary, China. We found a positive correlation between microbial diversity and the duration age of invasion, and both bacterial and fungal communities exerted orderly changes with invasion. Soil microbial metabolic potential, as indicated by the abundance of microbial functional genes involved in biogeochemical cycling, decreased in response to invasion. As a consequence, declined soil microbial metabolisms by plant invasion facilitated the carbon accumulation in invaded salt marshes. Bacteria and fungi exhibited distinct contributions to assembly processes along the invasion gradient: bacterial communities were mainly driven by selection and dispersal limitation, while fungi were dramatically shaped by stochastic processes. Soil microbial-mediated functions were taxon-specific, as indicated by community-function relationships. This study demonstrates the distinct contributions of microbial constituents to microbial community assembly and functions and sheds light on the implications of plant invasion on microbiologically driven ecosystem processes in coastal wetlands.
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Affiliation(s)
- Guangliang Zhang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, P.R. China
| | - Junhong Bai
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, P.R. China
| | - Christoph C Tebbe
- Thünen Institute of Biodiversity, Bundesallee 65, Braunschweig, Germany
| | - Laibin Huang
- Department of Land, Air, and Water Resources, University of California-, Davis, USA
| | - Jia Jia
- Henan Key Laboratory of Ecological Environment Protection and Restoration of Yellow River Basin, Yellow River Institute of Hydraulic Research, Zhengzhou, P.R. China
| | - Wei Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, P.R. China
| | - Xin Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, P.R. China
| | - Lu Yu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, P.R. China
| | - Qingqing Zhao
- Qilu University of Technology (Shandong Academy of Sciences), Ji' nan, P.R. China.,Ecology Institute of Shandong Academy of Sciences, Ji' nan, P.R. China
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9
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Gao GF, Li H, Shi Y, Yang T, Gao CH, Fan K, Zhang Y, Zhu YG, Delgado-Baquerizo M, Zheng HL, Chu H. Continental-scale plant invasions reshuffle the soil microbiome of blue carbon ecosystems. GLOBAL CHANGE BIOLOGY 2022; 28:4423-4438. [PMID: 35447006 DOI: 10.1111/gcb.16211] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
Theory and experiments support that plant invasions largely impact aboveground biodiversity and function. Yet, much less is known on the influence of plant invasions on the structure and function of the soil microbiome of coastal wetlands, one of the largest major reservoirs of biodiversity and carbon on Earth. We studied the continental-scale invasion of Spartina alterniflora across 2451 km of Chinese coastlines as our model-system and found that S. alterniflora invasion can largely influence the soil microbiome (across six depths from 0 to 100 cm), compared with the most common microhabitat found before invasion (mudflats, Mud). In detail, S. alterniflora invasion was not only positively associated with bacterial richness but also resulted in important biotic homogenization of bacterial communities, suggesting that plant invasion can lead to important continental scale trade-offs in the soil microbiome. We found that plant invasion changed the community composition of soil bacterial communities across the soil profile. Moreover, the bacterial communities associated with S. alterniflora invasions where less responsive to climatic changes than those in native Mud microhabitats, suggesting that these new microbial communities might become more dominant under climate change. Plant invasion also resulted in important reductions in the complexity and stability of microbial networks, decoupling the associations between microbes and carbon pools. Taken together, our results indicated that plant invasions can largely influence the microbiome of coastal wetlands at the scale of China, representing the first continental-scale example on how plant invasions can reshuffle the soil microbiome, with consequences for the myriad of functions that they support.
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Affiliation(s)
- Gui-Feng Gao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Huan Li
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
- College of Food and Bio-Engineering, Bengbu University, Bengbu, China
| | - Yu Shi
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Teng Yang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chang-Hao Gao
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Kunkun Fan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yihui Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistemico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, Sevilla, Spain
| | - Hai-Lei Zheng
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Haiyan Chu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
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10
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Sun Y, Chen L, Zhang S, Miao Y, Zhang Y, Li Z, Zhao J, Yu L, Zhang J, Qin X, Yao Y. Plant Interaction Patterns Shape the Soil Microbial Community and Nutrient Cycling in Different Intercropping Scenarios of Aromatic Plant Species. Front Microbiol 2022; 13:888789. [PMID: 35711748 PMCID: PMC9197114 DOI: 10.3389/fmicb.2022.888789] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 04/19/2022] [Indexed: 12/26/2022] Open
Abstract
Intercropping systems improve the soil nutrient cycle through microbial community activity and then land productivity. However, their interactions mechanism underlying that the mixed aromatic plant species intercropping regulate the soil microbiome and nutrient cycling on the perennial woody orchard is still uncovered. We designed treatments with 0, 1, and 3 aromatic plant species intercropped in two scenarios of clean tillage (T model, T1, T2, and T4) and natural grass (G model, G1, G2, and G4) in apple orchards, and investigated intercrops effects at the branch growing stage (BGS) and fruit development stage (FDS), respectively. Compared with T model, G model in FDS increased alpha diversity of bacterial community and Shannon index fungal community, the relative abundance of dominant taxa, such as Acidobacteria and Actinobacteria, and also the numbers of up and down-regulated OTUs, the most of indices of co-occurrence network in both bacterial and fungal community, and then improved invertase activity and available nitrogen content. Relative to G1, G2 and G4 reduced diversity bacterial community in FDS, the relative abundance of dominant taxa, the most of indices of co-occurrence network, and then improved soil invertase activity and total phosphorus content in soil. Moreover, Shannon index of fungal community, the altered number of OTUs and the most indices of co-occurrence network were higher in G4 than those in G2 in FDS. These changes above in FDS were more markedly than those in BGS, suggesting that chemical diversity of litter from mixed species of aromatic plants in natural grass scenario led to diversity, complexity, and stability of soil microbial community and then nutrient cycling. It provided a novel highlight and method to modulate biocenosis and then improve the soil nutrient cycling.
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Affiliation(s)
- Yue Sun
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China.,College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Li Chen
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Shiyi Zhang
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Yantao Miao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Yan Zhang
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Zhenglin Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Jingya Zhao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Lu Yu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Jie Zhang
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Xiaoxiao Qin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
| | - Yuncong Yao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.,College of Plant Science and Technology, Beijing University of Agriculture, Beijing, China.,Beijing Key Laboratory for Agricultural Application and New Technique, Beijing University of Agriculture, Beijing, China
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11
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Guseva K, Darcy S, Simon E, Alteio LV, Montesinos-Navarro A, Kaiser C. From diversity to complexity: Microbial networks in soils. SOIL BIOLOGY & BIOCHEMISTRY 2022; 169:108604. [PMID: 35712047 PMCID: PMC9125165 DOI: 10.1016/j.soilbio.2022.108604] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 02/08/2022] [Accepted: 02/09/2022] [Indexed: 05/07/2023]
Abstract
Network analysis has been used for many years in ecological research to analyze organismal associations, for example in food webs, plant-plant or plant-animal interactions. Although network analysis is widely applied in microbial ecology, only recently has it entered the realms of soil microbial ecology, shown by a rapid rise in studies applying co-occurrence analysis to soil microbial communities. While this application offers great potential for deeper insights into the ecological structure of soil microbial ecosystems, it also brings new challenges related to the specific characteristics of soil datasets and the type of ecological questions that can be addressed. In this Perspectives Paper we assess the challenges of applying network analysis to soil microbial ecology due to the small-scale heterogeneity of the soil environment and the nature of soil microbial datasets. We review the different approaches of network construction that are commonly applied to soil microbial datasets and discuss their features and limitations. Using a test dataset of microbial communities from two depths of a forest soil, we demonstrate how different experimental designs and network constructing algorithms affect the structure of the resulting networks, and how this in turn may influence ecological conclusions. We will also reveal how assumptions of the construction method, methods of preparing the dataset, and definitions of thresholds affect the network structure. Finally, we discuss the particular questions in soil microbial ecology that can be approached by analyzing and interpreting specific network properties. Targeting these network properties in a meaningful way will allow applying this technique not in merely descriptive, but in hypothesis-driven research. Analysing microbial networks in soils opens a window to a better understanding of the complexity of microbial communities. However, this approach is unfortunately often used to draw conclusions which are far beyond the scientific evidence it can provide, which has damaged its reputation for soil microbial analysis. In this Perspectives Paper, we would like to sharpen the view for the real potential of microbial co-occurrence analysis in soils, and at the same time raise awareness regarding its limitations and the many ways how it can be misused or misinterpreted.
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Affiliation(s)
- Ksenia Guseva
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
- Corresponding author.
| | - Sean Darcy
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
| | - Eva Simon
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
- Doctoral School in Microbiology and Environmental Science, University of Vienna, Vienna, Austria
| | - Lauren V. Alteio
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
| | - Alicia Montesinos-Navarro
- Centro de Investigaciones sobre Desertificación (CIDE, CSIC-UV-GV), Carretera de Moncada-Náquera Km 4.5, 46113, Moncada, Valencia, Spain
| | - Christina Kaiser
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
- Corresponding author.
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12
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Li L, Jiang X, Zhou Q, Chen J, Zang Y, Zhang Z, Gao C, Tang X, Shang S. Responses of Soil Microbiota to Different Control Methods of the Spartina alterniflora in the Yellow River Delta. Microorganisms 2022; 10:microorganisms10061122. [PMID: 35744640 PMCID: PMC9230759 DOI: 10.3390/microorganisms10061122] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 05/20/2022] [Accepted: 05/27/2022] [Indexed: 02/01/2023] Open
Abstract
Spartina alterniflora invasion has negative effects on the structure and functioning of coastal wetland ecosystems. Therefore, many methods for controlling S. alterniflora invasion have been developed. S. alterniflora control methods can affect plant community, which results in changes in microbial communities and subsequent changes in soil ecological processes. However, the effects of controlling S. alterniflora on soil microbial communities remain poorly understood. We aimed to examine the responses of bacterial and fungal communities to invasion control methods (cutting plus tilling treatment: CT; mechanical rolling treatment: MR). Soil bacterial and fungal community diversity and composition structure were assessed using high-throughput sequencing technology. The findings of the study showed that bacterial diversity and richness in the CT treatment reduced substantially, but fungal diversity and richness did not show any remarkable change. Bacterial and fungal diversity and richness in the MR treatment were not affected considerably. In addition, the two control methods significantly changed the soil microbial community structure. The relative abundance of bacteria negatively associated with nutrient cycling increased considerably in the CT treatment. The considerable increases in the relative abundance of certain bacterial taxa in the MR treatment may promote soil nutrient cycling. Compared with mechanical rolling, soil bacterial community diversity and structure were more sensitive to cutting plus tilling.
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Affiliation(s)
- Liangyu Li
- College of Marine Life Sciences, Ocean University of China, Qingdao 266005, China; (L.L.); (J.C.); (Y.Z.)
| | - Xiangyang Jiang
- Shandong Provincial Key Laboratory of Marine Ecological Restoration, Shandong Marine Resource and Environment Research Institute, Yantai 250299, China; (X.J.); (Q.Z.); (C.G.)
| | - Quanli Zhou
- Shandong Provincial Key Laboratory of Marine Ecological Restoration, Shandong Marine Resource and Environment Research Institute, Yantai 250299, China; (X.J.); (Q.Z.); (C.G.)
| | - Jun Chen
- College of Marine Life Sciences, Ocean University of China, Qingdao 266005, China; (L.L.); (J.C.); (Y.Z.)
| | - Yu Zang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266005, China; (L.L.); (J.C.); (Y.Z.)
| | - Zaiwang Zhang
- College of Biological and Environmental Engineering, Binzhou University, Binzhou 256601, China;
| | - Chen Gao
- Shandong Provincial Key Laboratory of Marine Ecological Restoration, Shandong Marine Resource and Environment Research Institute, Yantai 250299, China; (X.J.); (Q.Z.); (C.G.)
| | - Xuexi Tang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266005, China; (L.L.); (J.C.); (Y.Z.)
- Correspondence: (X.T.); (S.S.)
| | - Shuai Shang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266005, China; (L.L.); (J.C.); (Y.Z.)
- College of Biological and Environmental Engineering, Binzhou University, Binzhou 256601, China;
- Correspondence: (X.T.); (S.S.)
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13
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Shang S, Hu S, Liu X, Zang Y, Chen J, Gao N, Li L, Wang J, Liu L, Xu J, Zhang Y, Wu T, Tang X. Effects of
Spartina alterniflora
invasion on the community structure and diversity of wetland soil bacteria in the Yellow River Delta. Ecol Evol 2022; 12:e8905. [PMID: 35571753 PMCID: PMC9077829 DOI: 10.1002/ece3.8905] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 04/19/2022] [Accepted: 04/20/2022] [Indexed: 01/04/2023] Open
Affiliation(s)
- Shuai Shang
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
- College of Marine Life Sciences Ocean University of China Qingdao Shandong China
| | - Shunxin Hu
- Shandong Provincial Key laboratory of Marine Ecological Restoration Shandong Marine Resource and Environment Research Institute Yantai China
| | - Xiaoxue Liu
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Yu Zang
- College of Marine Life Sciences Ocean University of China Qingdao Shandong China
| | - Jun Chen
- College of Marine Life Sciences Ocean University of China Qingdao Shandong China
| | - Ning Gao
- National Marine Environment Monitoring Center Dalian China
| | - Liangyu Li
- College of Marine Life Sciences Ocean University of China Qingdao Shandong China
| | - Jun Wang
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Longxiang Liu
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Jikun Xu
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Yumiao Zhang
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Tao Wu
- College of Biological and Environmental Engineering Binzhou University Binzhou Shandong China
| | - Xuexi Tang
- College of Marine Life Sciences Ocean University of China Qingdao Shandong China
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14
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Yang C, Tang W, Sun J, Guo H, Sun S, Miao F, Yang G, Zhao Y, Wang Z, Sun J. Weeds in the Alfalfa Field Decrease Rhizosphere Microbial Diversity and Association Networks in the North China Plain. Front Microbiol 2022; 13:840774. [PMID: 35418969 PMCID: PMC8998637 DOI: 10.3389/fmicb.2022.840774] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 02/07/2022] [Indexed: 11/16/2022] Open
Abstract
The competition between weeds and crops for soil nutrients is affected by soil microorganisms, which drive diverse ecological processes and are critical in maintaining the stability of agroecosystems. However, the effects of plant species identity, particularly between forage and weed, on soil microbial diversity, composition, and association are not well understood. Here, we investigate the soil physicochemical properties and bacterial/fungal communities in an agroecosystem with native alfalfa [Medicago stativa (Ms)] and five common weed species (Digitaria sanguinalis, Echinochloa crusgalli, Acalypha australis, Portulaca oleracea, and Chenopodium album) in the North China Plain. The five weeds had a lower plant carbon content than Ms. while the opposite was true for plant nitrogen and phosphorus concentrations. The Shannon diversity of bacterial and fungal communities of the five weeds were significantly lower than in Ms. Soil pH and PO43−-P were identified as the most important factors in shaping the relative abundances of bacteria (Sphingomonadaceae) and fungi (Pleosporaceae), respectively. Importantly, the weeds greatly inhibited the growth of pathogenic fungi (Nectriaceae and Pleosporaceae). Bacterial co-occurrence networks depended on specific species, indicating that Ms. harbored co-occurrence networks that were more complex than those in the bacterial communities of other weed groups. Our study examines how soil nutrients and the soil microbial community structure of five weed species changed in an Ms. field. This analysis of the microbial ecological network enhances our understanding of the influence of weeds on the soil microbiome in agroecosystems.
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Affiliation(s)
- Chao Yang
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Wei Tang
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Junqi Sun
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
| | - Haipeng Guo
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
| | - Shusheng Sun
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
| | - Fuhong Miao
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Guofeng Yang
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Yiran Zhao
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Zengyu Wang
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
| | - Juan Sun
- College of Grassland Science, Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao, China
- Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, Qingdao, China
- *Correspondence: Juan Sun,
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15
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Huang C, Wu X, Liu X, Fang Y, Liu L, Wu C. Functional fungal communities dominate wood decomposition and are modified by wood traits in a subtropical forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:151377. [PMID: 34740660 DOI: 10.1016/j.scitotenv.2021.151377] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 10/28/2021] [Accepted: 10/29/2021] [Indexed: 06/13/2023]
Abstract
Wood decomposition is a fundamental process of the carbon cycle in forest ecosystems and differs under varying environmental conditions. However, it remains unclear whether exposure situation and litter removal affect wood decomposition, especially in subtropical forests. Therefore, we chose wood from four dominant species and carried out an experiment with treatments consisting of placing wood in ground contact with and without litter input and above ground exposure. The experiment was performed for 2.5 consecutive years in the subtropical forest of Southwest China to reveal the potential effects of microenvironmental changes due to above ground exposure and nutrient input changes due to litter removal. In this study, neither above ground exposure nor litter removal significantly changed the fungal communities, microbial respiration rates or decomposition rates of the wood, but significant differences among tree species were observed. The abundance of Ascomycota (70.2%) was higher than that of Basidiomycota (24.3%), and there was a significant negative relationship between their abundances, suggesting competition. Moreover, negative (Ascomycota) and positive (Basidiomycota) relationships with microbial respiration and explained 21.5 and 25.5% of the variation in microbial respiration, respectively. The wood density was directly controlled by the sugar, cellulose, and lignin contents and influenced the water content in the wood. The abundances of saprotrophic and pathotrophic fungi were significantly and directly regulated by the water content of the wood. The abundance of pathotrophic fungi was unaffected by wood traits, but these fungi may limit saprotrophic fungal colonization, thereby affecting microbial respiration and decomposition processes. We confirmed that the saprotrophic fungal abundance, rather than fungal diversity, determined wood microbial respiration. These results are of great significance for the comprehensive assessment of wood decomposition and the carbon cycle in subtropical forests, although long-term fungal community dynamics and decomposition rates under different conditions require further study.
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Affiliation(s)
- Changjiang Huang
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China
| | - Xiaoqing Wu
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China.
| | - Xiaoyu Liu
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China
| | - Yuting Fang
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China
| | - Lei Liu
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China
| | - Chuansheng Wu
- Anhui Province Key Laboratory of Environmental Hormone and Reproduction, Anhui Province Key Laboratory of Embryo Development and Reproductive Regulation, Fuyang Normal University, Fuyang, 236037, China.
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16
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Zhong F, Fan X, Ji W, Hai Z, Hu N, Li X, Liu G, Yu C, Chen Y, Lian B, Wei H, Zhang J. Soil Fungal Community Composition and Diversity of Culturable Endophytic Fungi from Plant Roots in the Reclaimed Area of the Eastern Coast of China. J Fungi (Basel) 2022; 8:jof8020124. [PMID: 35205878 PMCID: PMC8878519 DOI: 10.3390/jof8020124] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/16/2022] [Accepted: 01/25/2022] [Indexed: 12/13/2022] Open
Abstract
As an important resource for screening microbial strains capable of conferring stress tolerance in plants, the fungal community associated with the plants grown in stressful environments has received great attention. In this study, high-throughput sequencing was employed to study the rhizosphere fungal community in the reclaimed area (i.e., sites F, H, and T) of the eastern coast of China. Moreover, endophytic fungi from the root of six plant species colonizing the investigated sites were isolated and identified. The differences in soil physicochemical parameters, fungal diversity, and community structure were detected among the sampling sites and between the seasons. Ectomycorrhizal (ECM) fungi (e.g., genera Tuber and Geopora) were dominant at site F, which was characterized by high soil total carbon (SC) and total nitrogen (SN) contents and low soil electrical conductivity (EC) value. Arbuscular mycorrhizal (AM) fungi, including genera Glomus, Rhizophagus, and Entrophospora were dominant at sites H (winter), H (summer), and T (summer), respectively. The positive relationship between the EC value and the abundance of genus Glomus indicated the ability of this AM fungus to protect plants against the salt stress. Endophytic fungi at sites F (Aspergillus and Tetracladium), H (Nigrospora), and T (Nigrospora, Coniochaeta and Zopfiella) were recognized as the biomarkers or keystone taxa, among which only genus Aspergillus was isolated from the plant roots. The aforementioned AM fungi and endophytic fungi could contribute to the promotion of plant growth in the newly reclaimed land.
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Affiliation(s)
- Fei Zhong
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
- Correspondence: (F.Z.); (J.Z.)
| | - Xinlei Fan
- The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, China;
| | - Wenhui Ji
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
| | - Zhixing Hai
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
| | - Naican Hu
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
| | - Xintong Li
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
| | - Guoyuan Liu
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
| | - Chunmei Yu
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
| | - Yanhong Chen
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
| | - Bolin Lian
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
| | - Hui Wei
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
| | - Jian Zhang
- School of Life Science, Nantong University, Nantong 226019, China; (W.J.); (Z.H.); (N.H.); (X.L.); (G.L.); (C.Y.); (Y.C.); (B.L.); (H.W.)
- Key Lab of Landscape Plant Genetics and Breeding, Nantong 226019, China
- Correspondence: (F.Z.); (J.Z.)
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Pan Y, Kang P, Hu J, Song N. Bacterial community demonstrates stronger network connectivity than fungal community in desert-grassland salt marsh. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 798:149118. [PMID: 34332392 DOI: 10.1016/j.scitotenv.2021.149118] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Revised: 07/12/2021] [Accepted: 07/14/2021] [Indexed: 06/13/2023]
Abstract
The diversity of soil bacterial and fungal communities is closely related to the soil characteristics and vegetation types in salt marsh ecosystems, but the biogeographic patterns and driving factors in desert-grassland salt marsh (DGSM) are still unclear. In this study, we divided sample plots according to the dominant species in Jiantan Lake wetland of a typical DGSM in Northwestern China. The effects of different environmental factors and halophytes on the structure of soil bacterial and fungal communities were investigated using soil physicochemical characterization and high-throughput sequencing analysis. The diversity of bacterial communities in bulk soil and three dominant halophytes (Kalidium cuspidatum, Nitraria tangutorum and Sophora alopecuroides) were the main factors affecting soil physicochemical properties and halophyte vegetation coverage. Proteobacteria, Bacteroides and Gemmatimonadetes had the highest abundance in bulk soil and the lowest in Sophora alopecuroides sample soil; the opposite was true for Acidobacteria and Chloroflexi. The abundance of Ascomycota in bulk soil and Sophora alopecuroides sample soil was higher than Kalidium cuspidatum and Nitraria tangutorum sample soils, whereas the Mortierellomycota was the highest in Nitraria tangutorum sample soil. Co-occurrence network analysis showed that halophyte cover increased the connectivity and complexity of the bacterial-fungal interaction network, and the halophytic shrub sample soil had a more stable network relationship than the halophytic herb soil. The key taxa of each plot were identified through network relationships. It was found that the keystone taxa of Proteobacteria, Firmicutes, Ascomycota and Chytridiomycota played important roles in maintaining community functions, and most of them were not significantly influenced by soil physicochemical properties. The results of this study provide new insights for a deeper understanding of the halophytes that drive the multifunctionality and stability of soil ecosystems in DGSM.
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Affiliation(s)
- Yaqing Pan
- College of Agriculture, Ningxia University, Yinchuan 750021, Ningxia, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan 750021, Ningxia, China; Key Laboratory for Restoration and Reconstruction of Degraded Ecosystems in Northwest China, Ministry of Education, Ningxia University, Yinchuan 750021, China
| | - Peng Kang
- College of Biological Sciences and Engineering, North Minzu University, Yinchuan 750021, China; Ningxia Key Laboratory for the Development and Application of Microbial Resources in Extreme Environments, North Minzu University, Yinchuan 750021, China
| | - Jinpeng Hu
- College of Biological Sciences and Engineering, North Minzu University, Yinchuan 750021, China
| | - Naiping Song
- College of Agriculture, Ningxia University, Yinchuan 750021, Ningxia, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan 750021, Ningxia, China; Key Laboratory for Restoration and Reconstruction of Degraded Ecosystems in Northwest China, Ministry of Education, Ningxia University, Yinchuan 750021, China.
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Responses of the Soil Microbial Community to Salinity Stress in Maize Fields. BIOLOGY 2021; 10:biology10111114. [PMID: 34827107 PMCID: PMC8614889 DOI: 10.3390/biology10111114] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 10/23/2021] [Accepted: 10/26/2021] [Indexed: 01/13/2023]
Abstract
To investigate the diversity and structure of soil bacterial and fungal communities in saline soils, soil samples with three increasing salinity levels (S1, S2 and S3) were collected from a maize field in Yanqi, Xinjiang Province, China. The results showed that the K+, Na+, Ca2+ and Mg2+ values in the bulk soil were higher than those in the rhizosphere soil, with significant differences in S2 and S3 (p < 0.05). The enzyme activities of alkaline phosphatase (ALP), invertase, urease and catalase (CAT) were lower in the bulk soil than those in the rhizosphere. Principal coordinate analysis (PCoA) demonstrated that the soil microbial community structure exhibited significant differences between different salinized soils (p < 0.001). Data implied that the fungi were more susceptible to salinity stress than the bacteria based on the Shannon and Chao1 indexes. Mantel tests identified Ca2+, available phosphorus (AP), saturated electrical conductivity (ECe) and available kalium (AK) as the dominant environmental factors correlated with bacterial community structures (p < 0.001); and AP, urease, Ca2+ and ECe as the dominant factors correlated with fungal community structures (p < 0.001). The relative abundances of Firmicutes and Bacteroidetes showed positive correlations with the salinity gradient. Our findings regarding the bacteria having positive correlations with the level of salinization might be a useful biological indicator of microorganisms in saline soils.
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Jing H, Ji L, Wang Z, Guo J, Lu S, Sun J, Cai L, Wang Y. Synthesis of ZnO Nanoparticles Loaded on Biochar Derived from Spartina alterniflora with Superior Photocatalytic Degradation Performance. NANOMATERIALS 2021; 11:nano11102479. [PMID: 34684920 PMCID: PMC8541112 DOI: 10.3390/nano11102479] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/16/2021] [Accepted: 09/16/2021] [Indexed: 12/27/2022]
Abstract
Spartina alterniflora is an invasive plant from coastal wetlands, and its use in applications has garnered much interest. In this study, a composite photocatalyst (ZnO@BC) was synthesized by preparing zinc oxide (ZnO) nanoparticles with S. alterniflora extracts, S. alterniflora, and one-step carbonization, which was characterized using scanning electron microscope (SEM), transmission electron microscopy (TEM), Fourier transform infrared spectroscopy (FT-IR), Raman, X-ray photoelectron spectroscopy, ultraviolet-visible spectroscopy (UV-vis DRS), photoluminescence (PL) and N2 adsorption-desorption isotherm. The degradation capacity and mechanism of malachite green (MG) using ZnO@BC were analyzed under visible irradiation, and the degradation products of malachite green were detected by LC-MS. The results show that ZnO@BC has a larger surface area (83.2 m2/g) and various reactive groups, which enhance its photocatalytic efficiency, with the presence of oxygen vacancy further improving the photocatalytic activity. The total removal rate of malachite green (400 mg/L) using ZnO@BC is up to 98.38%. From the LC-MS analysis, it could be concluded that malachite green is degraded by demethylation, deamination, conjugate structure and benzene ring structure destruction. This study provides a novel idea for the high-value utilization of S. alterniflora.
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Affiliation(s)
- Hua Jing
- National Marine Facilities Aquaculture Engineering Technology Research Center, Zhejiang Ocean University, Zhoushan 316022, China; (H.J.); (S.L.); (J.S.); (Y.W.)
| | - Lili Ji
- National Marine Facilities Aquaculture Engineering Technology Research Center, Zhejiang Ocean University, Zhoushan 316022, China; (H.J.); (S.L.); (J.S.); (Y.W.)
- Correspondence: ; Tel.: +86-180-5805-3897
| | - Zhen Wang
- Zhejiang Lichen New Material Technology Co., Ltd., Hangzhou 310000, China;
| | - Jian Guo
- College of Food and Medical, Zhejiang Ocean University, Zhoushan 316022, China;
| | - Shiyao Lu
- National Marine Facilities Aquaculture Engineering Technology Research Center, Zhejiang Ocean University, Zhoushan 316022, China; (H.J.); (S.L.); (J.S.); (Y.W.)
| | - Jiaxing Sun
- National Marine Facilities Aquaculture Engineering Technology Research Center, Zhejiang Ocean University, Zhoushan 316022, China; (H.J.); (S.L.); (J.S.); (Y.W.)
| | - Lu Cai
- Donghai Science and Technology College, Zhejiang Ocean University, Zhoushan 316000, China;
| | - Yaning Wang
- National Marine Facilities Aquaculture Engineering Technology Research Center, Zhejiang Ocean University, Zhoushan 316022, China; (H.J.); (S.L.); (J.S.); (Y.W.)
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