The molecular mechanisms of Chlorella sp. responding to high CO2: A study based on comparative transcriptome analysis between strains with high- and low-CO2 tolerance

Two-stage carbon sequestration by Haematococcus pluvialis: Integrated research from small-scale to pilot-scale cultivation and data quality monitoring

A novel two-stage carbon sequestration strategy (3 % and 10 % CO2) was developed and its feasibility was comprehensively demonstrated by multiple methods (pilot-scale cultivation, kinetics, economics and carbon fixation analysis). It was also a safe, efficient and low-cost harvesting strategy. At the end of the culture, astaxanthin production and content increased 2.3 and 2.2 times, respectively. Sedimentation rate (SR) was introduced for the first time to evaluate microalgae culture methods. The SR reached 82.2 % after 2 h of standing. Pilot-scale cultivation was achieved outdoors, with the optimal photobioreactor being a 40 L tubular photobioreactor (T-PBRs), which individually achieved 3.1 g/L and 2.3 % biomass and astaxanthin content. The maximum rate of carbon sequestration (227.9 mg/L/d) was observed in 40 L T-PBRs. The cost of producing 1 kg of astaxanthin-enriched Haematococcus pluvialis (H. pluvialis) was only 17.5 USD. This study brings new perspectives to carbon sequestration and the development of astaxanthin markets.

Isolation and Whole-genome analysis of Desmodesmus sp. SZ-1: Novel acid-tolerant carbon-fixing microalga

Utilizing microalgae to capture flue gas pollutants is an effective strategy for mitigating greenhouse gas emissions. However, existing carbon-fixing microalgae exhibit poor tolerance towards acidic flue gas. In this study, the Desmodesmus sp. SZ-1, which can thrive in acidic environments and efficiently sequester CO2, was isolated. Desmodesmus sp. SZ-1 exhibited strong acid tolerance ability, with an average carbon fixation rate of 497.6 mg/L/d under 10 % CO2 and pH 3.5. Physiological analysis revealed that SZ-1 responded to high CO2 by increasing chlorophyll levels while coping with acidic stress by activating antioxidant enzymes. Genome analysis revealed a large number of carbon fixation and acid adaptation genes, involved in membrane lipid biosynthesis, H+ pumps, molecular chaperones, peroxidase system, amino acid synthesis, and carbonic anhydrase. This study provides a novel algal resource for mitigating acid gas emissions and a comprehensive genetic database for genetically modifying microalgae.

Bubble column photobioreactor (BCPR) for cultivating microalgae and microalgal consortium (Co-CC) with additional CO2 supply for enhancing biomass, lipid, and preferable fatty acids production

The present study has designed and developed a 5 L bubble column photobioreactor (BCPR) to investigate two microalgal strains Chlorella sp. S-01, Chlorella sp. S-02 and their consortium Co-CC (Chlorella sp. S-01 + Chlorella sp. S-02) at 0.03, 5, and 10% CO2 supply for biomass and lipid production. The dry cell weight of Chlorella sp. S-01, Chlorella sp. S-02 and Co-CC were, respectively about 1.41, 1.32, and 1.39 g/L on the 20th day without CO2 supply, while it was 1.76, 1.61, and 1.87 g/L, respectively at 10% CO2 supply and similarly, chlorophyll-a content was higher in 10% CO2 supplied condition over control. Interestingly, Co-CC grown at all the CO2 concentrations showed similar lipid content between 19.30 and 1F9.41%. As an integrated refinery approach, de-oiled biomass of Co-CC was subjected to carbohydrates and protein estimation and found that 46.2% and 30.80% in 10% CO2 supply condition in BCPR. Lipid extracted from the Co-CC grown under 0.03, 5, and 10% CO2 supply in 5L BCPR was converted to biodiesel, and the biodiesel yield was estimated to be 62.78%. Further, the fatty acid profile of Co-CC grown at 10% CO2 showed higher levels of C16:0, C16:1, C18:1, and monounsaturated fatty acids contents over other CO2 supplied conditions. Biodiesel of Co-CC showed favourable fuel properties such as density, higher heating value, oxidative stability, CFPP, viscosity, degree of unsaturation, saponification value, and cetane number, which were also in accordance with ASTM, and EN, biodiesel standards.

The V-type ATPase enhances photosynthesis in marine phytoplankton and further links phagocytosis to symbiogenesis

Diatoms, dinoflagellates, and coccolithophores are dominant groups of marine eukaryotic phytoplankton that are collectively responsible for the majority of primary production in the ocean.1 These phytoplankton contain additional intracellular membranes around their chloroplasts, which are derived from ancestral engulfment of red microalgae by unicellular heterotrophic eukaryotes that led to secondary and tertiary endosymbiosis.2 However, the selectable evolutionary advantage of these membranes and the physiological significance for extant phytoplankton remain poorly understood. Since intracellular digestive vacuoles are ubiquitously acidified by V-type H+-ATPase (VHA),3 proton pumps were proposed to acidify the microenvironment around secondary chloroplasts to promote the dehydration of dissolved inorganic carbon (DIC) into CO2, thus enhancing photosynthesis.4,5 We report that VHA is localized around the chloroplasts of centric diatoms and that VHA significantly contributes to their photosynthesis across a wide range of oceanic irradiances. Similar results in a pennate diatom, dinoflagellate, and coccolithophore, but not green or red microalgae, imply the co-option of phagocytic VHA activity into a carbon-concentrating mechanism (CCM) is common to secondary endosymbiotic phytoplankton. Furthermore, analogous mechanisms in extant photosymbiotic marine invertebrates6,7,8 provide functional evidence for an adaptive advantage throughout the transition from endosymbiosis to symbiogenesis. Based on the contribution of diatoms to ocean biogeochemical cycles, VHA-mediated enhancement of photosynthesis contributes at least 3.5 Gtons of fixed carbon per year (or 7% of primary production in the ocean), providing an example of a symbiosis-derived evolutionary innovation with global environmental implications.

Production of sustainable biofuels from microalgae with CO2 bio-sequestration and life cycle assessment

Due to anthropogenic emissions, there is an increase in the concentration of carbon dioxide (CO₂) in the atmosphere. Microalgae are versatile, universal, and photosynthetic microorganisms present in nature. Biological CO₂ sequestration using microalgae is a novel concept in CO₂ mitigation strategies. In the current review, the difference between carbon capture and storage (CCS), carbon capture utilization and storage (CCUS), and carbon capture and utilization (CCU) is clarified. The current status of CO₂ sequestration techniques is discussed, including various methods and a comparative analysis of abiotic and biotic sequestration. Particular focus is given to sequestration methods associated with microalgae, including advantages of CO₂ bio-sequestration using microalgae, a summary of microalgae species that tolerate high CO₂ concentrations, biochemistry of microalgal CO₂ biofixation, and elements influencing the microalgal CO₂ sequestration. In addition, this review highlights and summarizes the research efforts made on the production of various biofuels using microalgae. Notably, Chlorella sp. is found to be the most beneficial microalgae, with a sizeable hydrogen (H₂) generation capability ranging from 6.1 to 31.2 mL H₂/g microalgae, as well as the species of C. salina, C. fusca, Parachlorella kessleri, C. homosphaera, C. vacuolate, C. pyrenoidosa, C. sorokiniana, C. lewinii, and C. protothecoides. Lastly, the technical feasibility and life cycle analysis are analyzed. This comprehensive review will pave the way for promoting more aggressive research on microalgae-based CO₂ sequestration.

Pilot-scale remediation of rare earth elements ammonium wastewater by Chlamydomonas sp. YC in summer under outdoor conditions

This work evaluated the performance of real rare earth elements (REEs) wastewater purification and carbon dioxide (CO₂) fixation by Chlamydomonas sp. YC with pilot-scale airlift-photobioreactors (AL-PBRs), tubular photobioreactors (TB-PBRs) and raceway ponds (ORWPs) under high-temperature outdoor conditions in summer. The obtained results showed that Chlamydomonas sp. YC at 1 g/L oyster shell piece (OSP) and 3 % CO₂ had the highest biomass (1.9 g/L) and NH₄⁺-N removal efficiency (34.0 %) during the REEs wastewater treatment. Among the selected photobioreactors, Chlamydomonas sp. YC to treat real REEs wastewater at 3 % CO₂ under high-temperature outdoor conditions attained the highest biomass (2.3 g/L) in the TB-PBRs with the best NH₄⁺-N removal efficiency (43.0 %). Furthermore, the input cost and CO₂ net sequestration evaluation revealed that TB-PBRs was more economical photobioreactors to treat REEs wastewater and fix CO₂ by Chlamydomonas sp. YC, providing some vital scientific details for REEs wastewater and CO₂ fixation by microalgal biotechnology.

Clustered regularly interspaced short palindromic repeats (CRISPR) technology and genetic engineering strategies for microalgae towards carbon neutrality: A critical review

Carbon dioxide is the major greenhouse gas and regards as the critical issue of global warming and climate changes. The inconspicuous microalgae are responsible for 40% of carbon fixation among all photosynthetic plants along with a higher photosynthetic efficiency and convert the carbon into lipids, protein, pigments, and bioactive compounds. Genetic approach and metabolic engineering are applied to accelerate the growth rate and biomass of microalgae, hence achieve the mission of carbon neutrality. Meanwhile, CRISPR/Cas9 is efficiently to enhance the productivity of high-value compounds in microalgae for it is easier operation, more affordable and is able to regulate multiple genes simultaneously. The genetic engineering strategies provide the multidisciplinary concept to evolute and increase the CO₂ fixation rate through Calvin-Benson-Bassham cycle. Therefore, the technologies, bioinformatics tools, systematic engineering approaches for carbon neutrality and circular economy are summarized and leading one step closer to the decarbonization society in this review.

CO2 Levels Modulate Carbon Utilization, Energy Levels and Inositol Polyphosphate Profile in Chlorella

Microalgae have a growing recognition of generating biomass and capturing carbon in the form of CO₂. The genus Chlorella has especially attracted scientists' attention due to its versatility in algal mass cultivation systems and its potential in mitigating CO₂. However, some aspects of how these green microorganisms respond to increasing concentrations of CO₂ remain unclear. In this work, we analyzed Chlorella sorokiniana and Chlorella vulgaris cells under low and high CO₂ levels. We monitored different processes related to carbon flux from photosynthetic capacity to carbon sinks. Our data indicate that high concentration of CO₂ favors growth and photosynthetic capacity of the two Chlorella strains. Different metabolites related to the tricarboxylic acid cycle and ATP levels also increased under high CO₂ concentrations in Chlorella sorokiniana, reaching up to two-fold compared to low CO₂ conditions. The signaling molecules, inositol polyphosphates, that regulate photosynthetic capacity in green microalgae were also affected by the CO₂ levels, showing a deep profile modification of the inositol polyphosphates that over-accumulated by up to 50% in high CO₂ versus low CO₂ conditions. InsP₄ and InsP₆ increased 3- and 0.8-fold, respectively, in Chlorella sorokiniana after being subjected to 5% CO₂ condition. These data indicate that the availability of CO₂ could control carbon flux from photosynthesis to carbon storage and impact cell signaling integration and energy levels in these green cells. The presented results support the importance of further investigating the connections between carbon assimilation and cell signaling by polyphosphate inositols in microalgae to optimize their biotechnological applications.

Energy metabolism and intracellular pH regulation reveal different physiological acclimation mechanisms of Chlorella strains to high concentrations of CO2

The intolerance of high CO₂ in the exhaust gas is the "bottleneck" limiting the wide application of microalgae for CO₂ biosequestration. Around this topic, we selected high-CO₂-tolerant (LAMB 33 and 31) and nontolerant (LAMB 122) Chlorella strains to study their different energy metabolisms and cytoplasmic pH regulations in response to high CO₂. Under 40 % CO₂, LAMB 33 and 31 both showed elevated ATP synthesis, accelerated ATP consumption and fast cytoplasmic pH regulation while exhibiting different acclimating strategies therein: chloroplast acclimations were reflected by high chlorophyll contents in 33 but photosystem transitions in 31; faster mitochondrial acclimations occurred in 33 than in 31; cellular organic carbon mainly flowed to monosaccharide synthesis for 33 but to monosaccharide and protein synthesis for 31; and cytoplasmic pH regulation was attributed to V-ATPase in 31 but not in 33. All the above metabolic processes gradually collapsed in 122, leading to growth inhibition. Our study identified different metabolic acclimation strategies among Chlorella strains to high CO₂ and provided new traits for breeding microalgae for CO₂ biosequestration.

Transcriptome analysis of the production enhancement mechanism of antimicrobial lipopeptides of Streptomyces bikiniensis HD-087 by co-culture with Magnaporthe oryzae Guy11

The lipopeptides produced by Streptomyces bikiniensis have a significant inhibitory effect on Magnaporthe oryzae, but the low yield limits its application. In this study, the anti-M. oryzae activity of the broth of S. bikiniensis HD-087 co-cultured with M. oryzae Guy11 mycelium has risen by 41.22% compared with pure culture, and under induction conditions of adding Guy11-inducer (cell-free supernatant of M. oryzae Guy11), the activity of strain HD-087 improved 61.76%. The result proved that the enhancement effect of Guy11 on the antimicrobial activity of HD-087 was mainly related to metabolites but mycelium cells. Under optimum induction conditions, NRPS gene expression levels of HD-087 were significantly increased by induction with Guy11-inducer, the biomass of HD-087 had no significant change, but crude extract of lipopeptide (CEL) production was 107.4% higher than pure culture, and TLC result under acid hydrolysis showed that the induced culture has one component more than pure culture. To clarify the regulation mechanism of improving lipopeptide production of HD-087 with Guy11-inducer, transcriptomic analysis was performed using RNAseq to compare the induced culture and pure culture. In the induced culture, 943 genes were up-regulated, while 590 genes were down-regulated in DEGs (differentially expressed genes). KEGG results showed that the expression of genes related to amino acid synthesis, fatty acid metabolism, TCA cycle and pyruvate metabolism pathway were significantly increased. The increased expression of genes related to these metabolic pathways provided sufficient precursors for lipopeptide synthesis. Accordingly, key enzyme genes responsible for the synthesis of lipopeptides Srf and NRPS was significantly increased. Quorum sensing related genes OppA and MppA were significantly up-regulated, and then ComP was activated and promoted lipopeptide synthesis. These results provided a scientific basis for using M. oryzae to induce the increase of the production of Streptomyces lipopeptides, and also laid a foundation for further exploring the co-culture mechanisms among different genera.

Time-resolved transcriptome analysis of Scenedesmus obliquus HTB1 under 10% CO2 condition

Certain microalgal species can grow under high CO₂ concentrations providing potential for mitigating CO₂ pollution in flue gas produced by power plants. Microalga Scenedesmus obliquus strain HTB1 was isolated from the Chesapeake Bay and grow rapidly in a high level of CO₂ . However, little is known about the molecular responses of HTB1 to high CO₂ levels. Here, we investigated how HTB1 responds to 10% CO₂ using the time-resolved transcriptome analysis. Gene expression profiles indicated that HTB1 responds quickly (in 2 h) and becomes adaptive within 12 h when exposed to 10% CO₂ . Interestingly, certain genes of light-harvesting, chlorophyll synthesis and carbon fixation (i.e. rbcS) were up-regulated at 10% CO₂ , and these functional responses are consistent with the increased photosynthesis efficiency and algal biomass under 10% CO₂ . Nitrate assimilation was strongly enhanced, with amino acid biosynthesis and aminoacyl tRNA biosynthesis genes being markedly up-regulated, indicating that HTB1 actively takes up nitrogen and accelerates protein synthesis at 10% CO₂ . Carbon metabolism including fatty acid biosynthesis and TCA cycle was enhanced at 10% CO₂ , supporting the earlier observation of increased lipid content of Scenedesmus sp. under high CO₂ levels. Interestingly, key genes like RuBisCO (rbcL) and carbonic anhydrase in carboxysomes did not respond actively to 10% CO₂ , implying that exposure to 10% CO₂ has little impact on the carbon concentrating mechanisms and CO₂ fixation of the Calvin cycle. It appears that HTB1 can grow rapidly at 10% CO₂ without significant metabolic changes in carbon fixation and ATP synthesis.

Oleaginous Microalga Coccomyxa subellipsoidea as a Highly Effective Cell Factory for CO2 Fixation and High-Protein Biomass Production by Optimal Supply of Inorganic Carbon and Nitrogen

Microalgae used for CO2 biofixation can effectively relieve CO2 emissions and produce high-value biomass to achieve "waste-to-treasure" bioconversion. However, the low CO2 fixation efficiency and the restricted application of biomass are currently bottlenecks, limiting the economic viability of CO2 biofixation by microalgae. To achieve high-efficient CO2 fixation and high-protein biomass production, the oleaginous microalga Coccomyxa subellipsoidea (C. subellipsoidea) was cultivated autotrophically through optimizing inorganic carbon and nitrogen supply. 0.42 g L-1 NaHCO3 supplemented with 2% CO2 as a hybrid carbon source resulted in high biomass concentration (3.89 g L-1) and productivity (318.33) with CO2 fixation rate 544.21 mg L-1 d-1 in shake flasks. Then, used in a 5-L photo-fermenter, the maximal protein content (60.93% DW) in batch 1, and the highest CO2 fixation rate (1043.95 mg L-1 d-1) with protein content (58.48% DW) in batch 2 of repeated fed-batch cultures were achieved under 2.5 g L-1 nitrate. The relative expression of key genes involved in photosynthesis, glycolysis, and protein synthesis showed significant upregulation. This study developed a promising approach for enhancing carbon allocation to protein synthesis in oleaginous microalga, facilitating the bioconversion of the fixed carbon into algal protein instead of oil in green manufacturing.

Combined effect of CO2 concentration and low-cost urea repletion/starvation in Chlorella vulgaris for ameliorating growth metrics, total and non-polar lipid accumulation and fatty acid composition

Different CO₂ concentration such as 0.03, 5, 10 and 15% and low-cost urea repletion/starvation in Chlorella vulgaris on growth, total and non-polar lipid content and fatty acid composition was studied. Chlorella vulgaris grown at 0.03% CO₂ apparently revealed inferior biomass yield 0.55 g/L on 14th day compared to CO₂ supplemented cells. In the case of CO₂ supply, 15% CO₂ has unveiled higher biomass yield at about 1.83 g/L on day 12 whereas biomass yield for 5 and 10% CO₂ supplemented cells was 1.61 and 1.73 g/L, respectively on 12th day of cultivation. The biomass productivity (g) per liter per day was 32 mg in control condition whereas it was 125, 134 and 144 mg/L/d in 5, 10 and 15% CO₂ supplied cells, respectively. Lipid content of the strain grown at control, 5, 10 and 15% CO₂ was 21.2, 22.1, 23.4 and 24.6%, respectively and however, without CO₂ addition in low-cost urea repleted and urea depleted medium grown cells revealed 21.2 and 24.2%, respectively. Interestingly, strain grown at 15% CO₂ supply in urea deplete medium yielded 28.7% lipid and contribution of non-polar lipids in total lipids is 69.7%. Further, the fatty acid composition of the strain grown in 15% CO₂ supply in urea depleted medium showed C16:0, C16:1, C18:1 and C18:3 in the level of 30.12, 9.98, 23.43, and 11.97%, respectively compared to control and urea amended condition.