Effects of antimony on anaerobic methane oxidization and microbial community in an antimony-contaminated paddy soil: A microcosm study

Anaerobic oxidation of methane driven by different electron acceptors: A review

Methane, the most significant reduced form of carbon on Earth, acts as a crucial fuel and greenhouse gas. Globally, microbial methane sinks encompass both aerobic oxidation of methane (AeOM), conducted by oxygen-utilizing methanotrophs, and anaerobic oxidation of methane (AOM), performed by anaerobic methanotrophs employing various alternative electron acceptors. These electron acceptors involved in AOM include sulfate, nitrate/nitrite, humic substances, and diverse metal oxides. The known anaerobic methanotrophic pathways comprise the internal aerobic oxidation pathway found in NC10 bacteria and the reverse methanogenesis pathway utilized by anaerobic methanotrophic archaea (ANME). Diverse anaerobic methanotrophs can perform AOM independently or in cooperation with symbiotic partners through several extracellular electron transfer (EET) pathways. AOM has been documented in various environments, including seafloor methane seepages, coastal wetlands, freshwater lakes, soils, and even extreme environments like hydrothermal vents. The environmental activities of AOM processes, driven by different electron acceptors, primarily depend on the energy yields, availability of electron acceptors, and environmental adaptability of methanotrophs. It has been suggested that different electron acceptors driving AOM may occur across a wider range of habitats than previously recognized. Additionally, it is proposed that methanotrophs have evolved flexible metabolic strategies to adapt to complex environmental conditions. This review primarily focuses on AOM, driven by different electron acceptors, discussing the associated reaction mechanisms and the habitats where these processes are active. Furthermore, it emphasizes the pivotal role of AOM in mitigating methane emissions.

Rare earth elements applied to phytoremediation: Enhanced endocytosis promotes remediation of antimony contamination with different valence levels in Solanum nigrum L

Antimony (Sb) pollution poses a noteworthy risk to human health and ecosystem sustainability, therefore effective, eco-friendly, and widely accepted restoration methods are urgently needed. This study introduces a new approach of using La(III) foliar application on Solanum nigrum L. (S. nigrum), a cadmium hyperaccumulator, to improve its photosynthetic and root systems under Sb stress, resulting in a higher biomass. Notably, La(III) also enhances endocytosis in root cells, facilitating efficient and non-selective remediation of both Sb(III) and Sb(V) forms. The absorption of Sb by root cell endocytosis was observed visually with a confocal laser scanning microscope. The subcellular distribution of Sb in the cell wall of S. nigrum is reduced. And the antioxidant enzyme activity system is improved, resulting in an enhanced Sb tolerance in S. nigrum. Based on the existing bibliometric analysis, this paper identified optimal conditions for S. nigrum to achieve maximum translocation and bioconcentration factor values for Sb. The foliar application of La(III) on plants treated with Sb(III), Sb(V), and a combination of both resulted in translocation factor values of 0.89, 1.2, 1.13 and bioconcentration factor values of 11.3, 12.81, 14.54, respectively. Our work suggests that La(III)-enhanced endocytosis of S. nigrum root cells is a promising remediation strategy for Sb-contaminated environments.

Stibnite dissolution and Sb oxidation by Paraccocus versutus XT0.6 via direct and indirect contact

In this study Paraccocus versutus XT0.6 was employed to address the mechanism of microbial dissolution and oxidation of stibnite. Results showed that with the growth of XT0.6, pH increased to 9.0 in both microbe-mineral contact (MM) and microbe-mineral non-contact groups (M[M]). Dissolved Sb(III) was released from stibnite, which was subsequently quickly oxidized to Sb(V) completely in MM and partially in M[M] groups. On the contrast, the final pH decreased to 6.5 and 4.9, respectviely, in system amended with extracellular secretion (EM) of XT0.6 and abiotic groups. Dissolution of stibnite and oxidation of Sb(III) were also observed in EM group, suggesting a potential contribution of extracellular enzyme in Sb(III) oxidation. The dissolution and oxidation rates were the highest in MM group, followed by those in M[M], EM and abiotic groups. To be noted, Sb(V) concentration decreased in MM group on the fifth day, which might indicate the formation of Sb(V)-bearing secondary mineral. Genome of XT0.6 consisted of two chromosomes and one plasmid, and most genes responsible for antimony oxidation and antimony resistance were located on the chromosomes. Proteomics analysis of the extracellular secretions indicated the up-regulated proteins were mainly related to electron-transfer, suggesting their potential role in Sb(III) oxidation.

Selective pressure of arsenic and antimony co-contamination on microbial community in alkaline sediments

Although response of microbial community to arsenic (As) and antimony (Sb) co-contamination has been investigated in neutral and acidic environments, little is known in alkaline environment. Herein, the microbial response and survival strategies under the stress of As and Sb co-contamination were determined in the alkaline sediments. Elevated concentrations of As (13700 ± 5012 mg/kg) and Sb (10222 ± 1619 mg/kg) were introduced into the alkaline sediments by the mine drainage, which was partially adopted in the aquatic environment and resulted in a relatively lower contamination (As, 6633 ± 1707 mg/kg; Sb, 6108 ± 1095 mg/kg) in the downstream sediments. The microbial richness was significantly damaged and the microbial compositions were dramatically shifted by the As and Sb co-contamination. Metagenomic analysis shed light on the survival strategies of the microbes under the pressure of As and Sb co-contamination including metal oxidation coupled with denitrification, metal reduction, and metal resistance. The representative microbes were revealed in the sediments with higher (Halomonas) and lower (Thiobacillus, Hydrogenophaga and Flavihumibacter) As and Sb concentration, respectively. In addition, antibiotic resistance genes were found to co-occur with metal resistance genes in the assembled bins. These findings might provide theoretical guidance for bioremediation of As and Sb co-contamination in alkaline environment.

Study on performance and mechanisms of anaerobic oxidation of methane-microbial fuel cells (AOM-MFCs) with acetate-acclimatizing or formate-acclimatizing electroactive culture

Anaerobic oxidation of methane-microbial fuel cells with acetate-acclimatizing or formate-acclimatizing electroactive culture (A-AOM-MFC and F-AOM-MFC) were designed and operated at room temperature in this study to evaluate and explore the electrochemical performance and mechanisms of methane conversion and electricity generation. The results indicated that A-AOM-MFC output a higher voltage (0.526 ± 0.001 V) and F-AOM-MFC started up in a shorter time (51 d), resulting from different mechanisms of methane-electrogen caused by discrepant microbial alliances. Specifically, in A-AOM-MFC, acetoclastic methanogens (e.g., Methanosaeta) converted methane into intermediates (e.g., acetate) through reversing methanogenesis and carried out the direct interspecific electron transfer (DIET) with Geobacter-predominated electricigens which can oxidize the intermediates to carbon dioxide and transfer electrons to the electrodes. Differently, the intermediate-dependent extracellular electron transfer (EET) existed in F-AOM-MFC between hydro-methanogens (e.g., Methanobacterium) and electricigens (e.g., Geothrix), which was more difficult than DIET. Additionally, hydro-methanogens metabolized methane to produce formate-dominant intermediates more quickly.

Microbial response to antimony-arsenic distribution and geochemical factors at arable soil around an antimony mining site

Antimony (Sb) mining often causes severe Sb pollution and associate arsenic (As) compound contamination. To further understand the interaction mechanism among soil microorganisms, heavy metal distribution, and geochemical factors, the effects of environmental factors on soil microbial communities under different levels of Sb-As co-contamination were studied in situ of Chashan antimony mine, Guangxi Province. The results showed that the range of Sb and As contents in soil were 1339.63-7762.28 mg/kg and 2170.3-10,371.36 mg/kg, respectively, and the residual fraction accounted for more than 98.0% with less than 2.0% of bioavailable fraction. Besides, the concentration of the two metals is both related to the distance to surface runoff. Different microbial communities in arable soils of each sample site were analyzed, which was significantly affected by soil environmental factors such as pH, ALN, AP, OM, Tot-Sb, Tot-As, Bio-As, and Bio-Sb. The phylum of Actinobacteria in sites 1, 4, and 5 was the most dominant and the phylum of Proteobacteria were the most dominant in sites 2 and 3. Moreover, the results of redundancy analysis (RDA), variation partition analysis (VPA), and Spearman correlation analyses demonstrated that microorganisms, heavy metal distribution, and geochemical factors interacted with each other and together shaped the microbial community. Our findings are beneficial for understanding the response of soil microorganisms to As-Sb distribution and geochemical factors in arable soils under Sb mining areas.

The synergy of Fe(III) and NO2- drives the anaerobic oxidation of methane

The anaerobic oxidation of methane (AOM) driven by NO₂^- or Fe(III) alone was limited by slow electron delivery and ineffective enrichment of microbes. The flexible coupling between Fe(III) and NO₂^- potentially cooperated to accelerate AOM. One negative control was fed CH₄ and NO₂^-, and four treatment reactors were supplemented with CH₄, NO₂^- and ferric citrate (FC)/ferric chloride (FCH)/ chelate iron (FCI)/ferric hydroxide (FH) and were anaerobically operated for 1200 days to verify the synergy and promicrobial roles of Fe(III) and NO₂^- in improving AOM. The changes in gas and ion profiles were observed in the reactors, and microbial development was studied using 16S rRNA gene sequencing with the Illumina platform. The results indicated that the combined Fe(III) and NO₂^- treatment improved AOM, and their synergy followed the order of FC > FCI > FCH > FH. The biochemical reaction of Fe³⁺ with NO₂^- and its secondary process accelerated electron transfer to microbial cells and subsequently enhanced AOM in the reactors. The total organic carbon (TOC) content, NH₄⁺ content, NO₃^- content, and pH value altered the dominant bacteria the most in the FC reactor, FCI, FCH, and FH groups, respectively. Several dominant bacterial species were enriched, whereas only two archaea were highly concentrated in the FC and FCI groups. Only bacteria were detected in the FCH group, and archaea contributed substantially to the FH group. These findings contribute to an improved understanding of the interactions among nitrogen, iron and CH₄ that are paramount to accelerating the process of AOM for engineering applications.

Quinolone antibiotics enhance denitrifying anaerobic methane oxidation in Wetland sediments: Counterintuitive results

Denitrifying anaerobic methane oxidation (DAMO) plays an important role in the element cycle of wetlands. In recent years, the content of antibiotics in wetlands has gradually increased due to human activities. However, the impact of antibiotics on the ecological function of DAMO remains unclear. Here we studied the influence of three high-content quinolone antibiotics (QNs) on DAMO in the sediments of the Baiyangdian Wetland. The results show that QNs can significantly promote the potential DAMO rates. Moreover, the enhancement of potential DAMO rates is positively correlated with the dosage of QNs. This promotion effect of QNs on nitrate-DAMO can be attributed to the hormesis phenomenon or their inhibition of substrate competitors. As antibacterial agents, QNs inhibit nitrite-DAMO conducted by bacteria, but greatly promote nitrate-DAMO conducted by archaea. These results suggest that the short-term effect of QNs on DAMO in wetlands is promotion rather than inhibition.

Enhanced biological antimony removal from water by combining elemental sulfur autotrophic reduction and disproportionation

Antimony (Sb), a toxic metalloid, has serious negative effects on human health and its pollution has become a global environmental problem. Bio-reduction of Sb(V) is an effective Sb-removal approach. This work, for the first time, demonstrates the feasibility of autotrophic Sb(V) bio-reduction and removal coupled to anaerobic oxidation of elemental sulfur (S⁰). In the S⁰-based biological system, Sb(V) was reduced to Sb(III) via autotrophic bacteria by using S⁰ as electron donor. Meanwhile, S⁰ disproportionation reaction occurred under anaerobic condition, generating sulfide and SO₄^2- in the bio-systems. Subsequently, Sb(III) reacted with sulfide and formed Sb(III)-S precipitate, achieving an effective total Sb removal. The precipitate was identified as Sb₂S₃ by SEM-EDS, XPS, XRD and Raman spectrum analyses. In addition, it was found that co-existing nitrate inhibited the Sb removal, as nitrate is the favored electron acceptor over Sb(V). In contrast, the bio-reduction of co-existing SO₄^2- enhanced sulfide generation, followed by promoting Sb(V) reduction and precipitation. Illumina high-throughput sequencing analysis revealed that Metallibacterium, Citrobacter and Thiobacillus might be responsible for Sb(V) reduction and S⁰ disproportionation. This study provides a promising approach for the remediation of Sb(V)-contaminated water.

Impacts of typical engineering nanomaterials on the response of rhizobacteria communities and rice (Oryza sativa L.) growths in waterlogged antimony-contaminated soils

The combined eco-risks of Sb (widely presented in soils, especially nearing mining areas) and the engineering nanomaterials (ENMs) (applied in agriculture and soil remediation) still remain uncovered. The current study investigated the impacts of single and combined exposure of CuO, CeO₂ nanoparticles (NPs) and multi-walled carbon nanotube (MWCNTs) with Sb on rice growths and rhizosphere bacterial communities. The results showed that co-exposure of CuO NPs (0.075 wt%) with Sb (III) posed the most adverse impacts on root biomass and branches (up to 66.59% and 70.00% compared to other treatments, respectively). Treatments containing MWCNTs showed insignificant dose-dependent effects, while CeO₂ NPs combined with Sb (III) showed significant synergistic stimulating effects on the fresh weights of root and shoot, by 68.30% and 73.48% (p < 0.05) compared to single Sb exposure, respectively. The rice planting increased the percentage of non-specifically sorbed Sb in soils by 1.50-14.49 than the no-planting stage. Analysis on microbial communities revealed that co-exposure of CuO NPs with Sb (III) induced the greatest adverse impacts on rhizobacteria abundances and community structures at both phylum and genus levels. Therein, significant decrease of Bacteroidetes, Acidobacteria and increase of Firmicutes abundance at the phylum level were observed. This study provided information about the risks of different ENMs released to Sb-contaminated soils under flooded condition on both crops and bacterial communities.

Metagenomic analysis reveals the response of microbial community in river sediment to accidental antimony contamination

The mining of deposits containing metals like antimony (Sb) causes serious environmental issues that threaten human health and ecological systems. However, information on the effect of Sb on freshwater sediment microorganisms and the mechanism of microbial Sb resistance is still very limited. This was the first attempt to explore microbial communities in river sediments impacted by accidental Sb spill. Metagenomic analysis revealed the high relative abundance of Proteobacteria and Actinobacteria in all the studied river sediments, showing their advantage in resistance to Sb pollution. Under Sb stress, microbial functions related to DNA repair and ion transport were enhanced. Increase in heavy metal resistance genes (HMRGs), particularly Sb transport-related arsB gene, was observed at Sb spill-impacted sites. HMRGs were significantly correlated with ARGs and MGEs, and the abundant MGEs at Sb spill-impacted sites might contribute to the increase in HMRGs and ARGs via horizontal gene transfer. Deinococcus, Sphingopyxis and Paracoccus were identified as potential tolerant genera under Sb pressure and might be related to the transmission of HMRGs and ARGs. This study can add new insights towards the effect of accidental metal spill on sediment microbial community.

Stabilization of lead and cadmium in soil by sulfur-iron functionalized biochar: Performance, mechanisms and microbial community evolution

Sulfur-iron functionalized biochar (BC-Fe-S) was designed by simultaneously supporting Fe₂O₃ nanoparticles and grafting sulfur-containing functional groups onto biochar to stabilize Pb and Cd in soil. The BC-Fe-S exhibited excellent stabilization performance for Pb and Cd with fast kinetic equilibrium within 5 days associating with pseudo-second-order model. The bioavailable-Pb and -Cd contents decreased by 59.22% and 70.28% with 3% BC-Fe-S treatment after 20 days of remediation. Speciation transformation analysis revealed that the increase of stabilization time and BC-Fe-S dosage with appropriate soil moisture and pH promoted toxicities decrease of Pb and Cd with transformation of labile fractions to more steady fractions. The labile fractions of Pb and Cd decreased by 12.22% and 16.21% with 3% BC-Fe-S treatment, and transformed to the residual speciation. Meanwhile, wetting-drying and freezing-thawing aging did not markedly alter the bioavailability of Pb and Cd, proving that the BC-Fe-S holds promise for stabilization of Pb and Cd in varying environmental conditions. 16S rRNA sequencing analysis demonstrated that the BC-Fe-S significantly improved diversity and composition of microbial community, especially increasing the relative abundance of heavy metal-resistant bacteria. Overall, these results suggested BC-Fe-S as a high-performance and environmental-friendly amendment with stability to remediate heavy metals polluted soil.

Metabolic potential of anaerobic methane oxidizing archaea for a broad spectrum of electron acceptors

Methane (CH₄) is a potent greenhouse gas significantly contributing to the climate warming we are currently facing. Microorganisms play an important role in the global CH₄ cycle that is controlled by the balance between anaerobic production via methanogenesis and CH₄ removal via methanotrophic oxidation. Research in recent decades advanced our understanding of CH₄ oxidation, which until 1976 was believed to be a strictly aerobic process. Anaerobic oxidation of methane (AOM) coupled to sulfate reduction is now known to be an important sink of CH₄ in marine ecosystems. Furthermore, in 2006 it was discovered that anaerobic CH₄ oxidation can also be coupled to nitrate reduction (N-DAMO), demonstrating that AOM may be much more versatile than previously thought and linked to other electron acceptors. In consequence, an increasing number of studies in recent years showed or suggested that alternative electron acceptors can be used in the AOM process including Fe^III, Mn^IV, As^V, Cr^VI, Se^VI, Sb^V, V^V, and Br^V. In addition, humic substances as well as biochar and perchlorate (ClO₄^-) were suggested to mediate AOM. Anaerobic methanotrophic archaea, the so-called ANME archaea, are key players in the AOM process, yet we are still lacking deeper understanding of their metabolism, electron acceptor preferences and their interaction with other microbial community members. It is still not clear whether ANME archaea can oxidize CH₄ and reduce metallic electron acceptors independently or via electron transfer to syntrophic partners, interspecies electron transfer, nanowires or conductive pili. Therefore, the aim of this review is to summarize and discuss the current state of knowledge about ANME archaea, focusing on their physiology, metabolic flexibility and potential to use various electron acceptors.

Energy Availability Determines Strategy of Microbial Amino Acid Synthesis in Volatile Fatty Acid-Fed Anaerobic Methanogenic Chemostats

In natural communities, microbes exchange a variety of metabolites (public goods) with each other, which drives the evolution of auxotroph and shapes interdependent patterns at community-level. However, factors that determine the strategy of public goods synthesis for a given community member still remains to be elucidated. In anaerobic methanogenic communities, energy availability of different community members is largely varied. We hypothesized that this uneven energy availability contributed to the heterogeneity of public goods synthesis ability among the members in these communities. We tested this hypothesis by analyzing the synthetic strategy of amino acids of the bacterial and archaeal members involved in four previously enriched anaerobic methanogenic communities residing in thermophilic chemostats. Our analyses indicate that most of the members in the communities did not possess ability to synthesize all the essential amino acids, suggesting they exchanged these essential public goods to establish interdependent patterns for survival. Importantly, we found that the amino acid synthesis ability of a functional group was largely determined by how much energy it could obtain from its metabolism in the given environmental condition. Moreover, members within a functional group also possessed different amino acid synthesis abilities, which are related to their features of energy metabolism. Our study reveals that energy availability is a key driver of microbial evolution in presence of metabolic specialization at community level and suggests the feasibility of managing anaerobic methanogenic communities for better performance through controlling the metabolic interactions involved.

A Critical Review of Resistance and Oxidation Mechanisms of Sb-Oxidizing Bacteria for the Bioremediation of Sb(III) Pollution

Antimony (Sb) is a priority pollutant in many countries and regions due to its chronic toxicity and potential carcinogenicity. Elevated concentrations of Sb in the environmental originating from mining and other anthropogenic sources are of particular global concern, so the prevention and control of the source of pollution and environment remediation are urgent. It is widely accepted that indigenous microbes play an important role in Sb speciation, mobility, bioavailability, and fate in the natural environment. Especially, antimony-oxidizing bacteria can promote the release of antimony from ore deposits to the wider environment. However, it can also oxidize the more toxic antimonite [Sb(III)] to the less-toxic antimonate [Sb(V)], which is considered as a potentially environmentally friendly and efficient remediation technology for Sb pollution. Therefore, understanding its biological oxidation mechanism has great practical significance to protect environment and human health. This paper reviews studies of the isolation, identification, diversity, Sb(III) resistance mechanisms, Sb(III) oxidation characteristics and mechanism and potential application of Sb-oxidizing bacteria. The aim is to provide a theoretical basis and reference for the diversity and metabolic mechanism of Sb-oxidizing bacteria, the prevention and control of Sb pollution sources, and the application of environment treatment for Sb pollution.