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Puranik A, Diggle PJ, Odiere MR, Gass K, Kepha S, Okoyo C, Mwandawiro C, Wakesho F, Omondi W, Sultani HM, Giorgi E. Understanding the impact of covariates on the classification of implementation units for soil-transmitted helminths control: a case study from Kenya. BMC Med Res Methodol 2024; 24:294. [PMID: 39614175 DOI: 10.1186/s12874-024-02420-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 11/25/2024] [Indexed: 12/01/2024] Open
Abstract
BACKGROUND Soil-transmitted helminthiasis (STH) are a parasitic infection that predominantly affects impoverished regions. Model-based geostatistics (MBG) has been established as a set of modern statistical methods that enable mapping of disease risk in a geographical area of interest. We investigate how the use of remotely sensed covariates can help to improve the predictive inferences on STH prevalence using MBG methods. In particular, we focus on how the covariates impact on the classification of areas into distinct class of STH prevalence. METHODS This study uses secondary data obtained from a sample of 1551 schools in Kenya, gathered through a combination of longitudinal and cross-sectional surveys. We compare the performance of two geostatistical models: one that does not make use of any spatially referenced covariate; and a second model that uses remotely sensed covariates to assist STH prevalence prediction. We also carry out a simulation study in which we compare the performance of the two models in the classifications of areal units with varying sample sizes and prevalence levels. RESULTS The model with covariates generated lower levels of uncertainty and was able to classify 88 more districts into prevalence classes than the model without covariates, which instead left those as "unclassified". The simulation study showed that the model with covariates also yielded a higher proportion of correct classification of at least 40% for all sub-counties. CONCLUSION Covariates can substantially reduce the uncertainty of the predictive inference generated from geostatistical models. Using covariates can thus contribute to the design of more effective STH control strategies by reducing sample sizes without compromising the predictive performance of geostatistical models.
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Affiliation(s)
- Amitha Puranik
- Centre for Health Informatics, Computing, and Statistics (CHICAS), Lancaster Medical School, Lancaster University, Lancaster, United Kingdom
| | - Peter J Diggle
- Centre for Health Informatics, Computing, and Statistics (CHICAS), Lancaster Medical School, Lancaster University, Lancaster, United Kingdom
| | - Maurice R Odiere
- Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya
| | - Katherine Gass
- Neglected Tropical Diseases Support Center (NTD-SC), Task Force for Global Health, Atlanta, USA
| | - Stella Kepha
- Division of Vector Borne and Neglected Tropical Diseases, Ministry of Health, Nairobi, Kenya
| | - Collins Okoyo
- Eastern and Southern Africa Centre of International Parasite Control (ESACIPAC), Kenya Medical Research Institute, Nairobi, Kenya
- Department of Epidemiology, Statistics and Informatics (DESI), Kenya Medical Research Institute, Nairobi, Kenya
| | - Charles Mwandawiro
- Eastern and Southern Africa Centre of International Parasite Control (ESACIPAC), Kenya Medical Research Institute, Nairobi, Kenya
| | - Florence Wakesho
- Division of Vector Borne and Neglected Tropical Diseases, Ministry of Health, Nairobi, Kenya
| | - Wycliff Omondi
- Division of Vector Borne and Neglected Tropical Diseases, Ministry of Health, Nairobi, Kenya
| | | | - Emanuele Giorgi
- Centre for Health Informatics, Computing, and Statistics (CHICAS), Lancaster Medical School, Lancaster University, Lancaster, United Kingdom.
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Macharia PM, Wong KLM, Beňová L, Wang J, Makanga PT, Ray N, Banke-Thomas A. Measuring geographic access to emergency obstetric care: a comparison of travel time estimates modelled using Google Maps Directions API and AccessMod in three Nigerian conurbations. GEOSPATIAL HEALTH 2024; 19. [PMID: 38801322 DOI: 10.4081/gh.2024.1266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 05/01/2024] [Indexed: 05/29/2024]
Abstract
Google Maps Directions Application Programming Interface (the API) and AccessMod tools are increasingly being used to estimate travel time to healthcare. However, no formal comparison of estimates from the tools has been conducted. We modelled and compared median travel time (MTT) to comprehensive emergency obstetric care (CEmOC) using both tools in three Nigerian conurbations (Kano, Port-Harcourt, and Lagos). We compiled spatial layers of CEmOC healthcare facilities, road network, elevation, and land cover and used a least-cost path algorithm within AccessMod to estimate MTT to the nearest CEmOC facility. Comparable MTT estimates were extracted using the API for peak and non-peak travel scenarios. We investigated the relationship between MTT estimates generated by both tools at raster celllevel (0.6 km resolution). We also aggregated the raster cell estimates to generate administratively relevant ward-level MTT. We compared ward-level estimates and identified wards within the same conurbation falling into different 15-minute incremental categories (<15/15-30/30-45/45-60/+60). Of the 189, 101 and 375 wards, 72.0%, 72.3% and 90.1% were categorised in the same 15- minute category in Kano, Port-Harcourt, and Lagos, respectively. Concordance decreased in wards with longer MTT. AccessMod MTT were longer than the API's in areas with ≥45min. At the raster cell-level, MTT had a strong positive correlation (≥0.8) in all conurbations. Adjusted R2 from a linear model (0.624-0.723) was high, increasing marginally in a piecewise linear model (0.677-0.807). In conclusion, at <45-minutes, ward-level estimates from the API and AccessMod are marginally different, however, at longer travel times substantial differences exist, which are amenable to conversion factors.
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Affiliation(s)
- Peter M Macharia
- Population and Health Impact Surveillance Group, Kenya Medical Research Institute-Wellcome Trust Research Programme, Nairobi, Kenya; Department of Public Health, Institute of Tropical Medicine, Antwerp.
| | - Kerry L M Wong
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London.
| | - Lenka Beňová
- Department of Public Health, Institute of Tropical Medicine, Antwerp, Belgium; Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London.
| | - Jia Wang
- School of Computing and Mathematical Sciences, University of Greenwich, London.
| | - Prestige Tatenda Makanga
- Surveying and Geomatics Department, Midlands State University Faculty of the Built Environment, Gweru, Midlands, Zimbabwe; Climate, Environment and Health Department, Centre for Sexual Health and HIV/AIDS Research, Harare, Zimbabwe; Department of International Public Health, Liverpool School of Tropical Medicine, Liverpool.
| | - Nicolas Ray
- GeoHealth Group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland; Institute for Environmental Sciences, University of Geneva, Geneva.
| | - Aduragbemi Banke-Thomas
- Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom; School of Human Sciences, University of Greenwich, London, United Kingdom; Maternal and Reproductive Health Research Collective, Surulere, Lagos.
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Hierink F, Oladeji O, Robins A, Muñiz MF, Ayalew Y, Ray N. A geospatial analysis of accessibility and availability to implement the primary healthcare roadmap in Ethiopia. COMMUNICATIONS MEDICINE 2023; 3:140. [PMID: 37805668 PMCID: PMC10560263 DOI: 10.1038/s43856-023-00372-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 09/26/2023] [Indexed: 10/09/2023] Open
Abstract
BACKGROUND Primary healthcare (PHC) is a crucial strategy for achieving universal health coverage. Ethiopia is working to improve its primary healthcare system through the Optimization of Health Extension Program (OHEP), which aims to increase accessibility, availability and performance of health professionals and services. Measuring current accessibility of healthcare facilities and workforce availability is essential for the success of the OHEP and achieving universal health coverage in the country. METHODS In this study we use an innovative mixed geospatial approach to assess the accessibility and availability of health professionals and services to provide evidence-based recommendations for the implementation of the OHEP. We examined travel times to health facilities, referral times between health posts and health centers, geographical coverage, and the availability and density of health workers relative to the population. RESULTS Our findings show that the accessibility and availability of health services in Somali region of Ethiopia is generally low, with 65% of the population being unable to reach a health center or a health post within 1 h walking and referral times exceeding 4 h walking on average. The density of the health workforce is low across Somali region, with no health center being adequately staffed as per national guidelines. CONCLUSIONS Improving accessibility and addressing healthcare worker scarcity are challenges for implementing the primary care roadmap in Ethiopia. Upgrading health posts and centers, providing comprehensive services, and training healthcare workers are crucial. Effective outreach strategies are also needed to bridge the gap and improve accessibility and availability.
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Affiliation(s)
- Fleur Hierink
- GeoHealth group, Institute of Global Health, University of Geneva, Geneva, Switzerland.
- Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland.
| | | | - Ann Robins
- UNICEF Ethiopia, Country Office, Addis Abeba, Ethiopia
| | - Maria F Muñiz
- UNICEF, Eastern and Southern Africa Regional Office, Nairobi, Kenya
| | | | - Nicolas Ray
- GeoHealth group, Institute of Global Health, University of Geneva, Geneva, Switzerland
- Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland
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Morlighem C, Chaiban C, Georganos S, Brousse O, van Lipzig NPM, Wolff E, Dujardin S, Linard C. Spatial Optimization Methods for Malaria Risk Mapping in Sub-Saharan African Cities Using Demographic and Health Surveys. GEOHEALTH 2023; 7:e2023GH000787. [PMID: 37811342 PMCID: PMC10558065 DOI: 10.1029/2023gh000787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 06/26/2023] [Accepted: 09/07/2023] [Indexed: 10/10/2023]
Abstract
Vector-borne diseases, such as malaria, are affected by the rapid urban growth and climate change in sub-Saharan Africa (SSA). In this context, intra-urban malaria risk maps act as a key decision-making tool for targeting malaria control interventions, especially in resource-limited settings. The Demographic and Health Surveys (DHS) provide a consistent malaria data source for mapping malaria risk at the national scale, but their use is limited at the intra-urban scale because survey cluster coordinates are randomly displaced for ethical reasons. In this research, we focus on predicting intra-urban malaria risk in SSA cities-Dakar, Dar es Salaam, Kampala and Ouagadougou-and investigate the use of spatial optimization methods to overcome the effect of DHS spatial displacement. We modeled malaria risk using a random forest regressor and remotely sensed covariates depicting the urban climate, the land cover and the land use, and we tested several spatial optimization approaches. The use of spatial optimization mitigated the effects of DHS spatial displacement on predictive performance. However, this comes at a higher computational cost, and the percentage of variance explained in our models remained low (around 30%-40%), which suggests that these methods cannot entirely overcome the limited quality of epidemiological data. Building on our results, we highlight potential adaptations to the DHS sampling strategy that would make them more reliable for predicting malaria risk at the intra-urban scale.
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Affiliation(s)
- Camille Morlighem
- Department of GeographyUniversity of NamurNamurBelgium
- ILEEUniversity of NamurNamurBelgium
| | - Celia Chaiban
- Department of GeographyUniversity of NamurNamurBelgium
- ILEEUniversity of NamurNamurBelgium
| | - Stefanos Georganos
- Geomatics UnitDepartment of Environmental and Life SciencesKarlstad UniversityKarlstadSweden
| | - Oscar Brousse
- Institute of Environmental Design and EngineeringUniversity College LondonLondonUK
- Department of Earth and Environmental SciencesKatholieke Universiteit LeuvenLeuvenBelgium
| | | | - Eléonore Wolff
- Department of Geoscience, Environment & SocietyUniversité Libre de BruxellesBrusselsBelgium
| | - Sébastien Dujardin
- Department of GeographyUniversity of NamurNamurBelgium
- ILEEUniversity of NamurNamurBelgium
| | - Catherine Linard
- Department of GeographyUniversity of NamurNamurBelgium
- ILEEUniversity of NamurNamurBelgium
- NARILISUniversity of NamurNamurBelgium
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Hierink F, Boo G, Macharia PM, Ouma PO, Timoner P, Levy M, Tschirhart K, Leyk S, Oliphant N, Tatem AJ, Ray N. Differences between gridded population data impact measures of geographic access to healthcare in sub-Saharan Africa. COMMUNICATIONS MEDICINE 2022; 2:117. [PMID: 36124060 PMCID: PMC9481590 DOI: 10.1038/s43856-022-00179-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 09/01/2022] [Indexed: 12/04/2022] Open
Abstract
Background Access to healthcare is imperative to health equity and well-being. Geographic access to healthcare can be modeled using spatial datasets on local context, together with the distribution of existing health facilities and populations. Several population datasets are currently available, but their impact on accessibility analyses is unknown. In this study, we model the geographic accessibility of public health facilities at 100-meter resolution in sub-Saharan Africa and evaluate six of the most popular gridded population datasets for their impact on coverage statistics at different administrative levels. Methods Travel time to nearest health facilities was calculated by overlaying health facility coordinates on top of a friction raster accounting for roads, landcover, and physical barriers. We then intersected six different gridded population datasets with our travel time estimates to determine accessibility coverages within various travel time thresholds (i.e., 30, 60, 90, 120, 150, and 180-min). Results Here we show that differences in accessibility coverage can exceed 70% at the sub-national level, based on a one-hour travel time threshold. The differences are most notable in large and sparsely populated administrative units and dramatically shape patterns of healthcare accessibility at national and sub-national levels. Conclusions The results of this study show how valuable and critical a comparative analysis between population datasets is for the derivation of coverage statistics that inform local policies and monitor global targets. Large differences exist between the datasets and the results underscore an essential source of uncertainty in accessibility analyses that should be systematically assessed.
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Affiliation(s)
- Fleur Hierink
- GeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland
- Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland
| | - Gianluca Boo
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK
- Small Arms Survey, The Graduate Institute, Geneva, Switzerland
| | - Peter M. Macharia
- Population Health Unit, Kenya Medical Research Institute - Wellcome Trust Research Programme, Nairobi, Kenya
- Centre for Health Informatics, Computing and Statistics, Lancaster Medical School, Lancaster University, Lancaster, UK
| | - Paul O. Ouma
- Population Health Unit, Kenya Medical Research Institute - Wellcome Trust Research Programme, Nairobi, Kenya
| | - Pablo Timoner
- GeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland
- Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland
| | - Marc Levy
- CIESIN, The Center for International Earth Science Information Network, Columbia University, Palisades, NY USA
| | - Kevin Tschirhart
- CIESIN, The Center for International Earth Science Information Network, Columbia University, Palisades, NY USA
| | - Stefan Leyk
- Department of Geography, University of Colorado in Boulder, Boulder, CO USA
| | - Nicholas Oliphant
- The Global Fund to Fight AIDS, Tuberculosis and Malaria, Geneva, Switzerland
| | - Andrew J. Tatem
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK
| | - Nicolas Ray
- GeoHealth group, Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland
- Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland
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