1
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Uribe JL, Jimenez MD, Kelz JI, Liang J, Martin RW. Automated test apparatus for bench-testing the magnetic field homogeneity of NMR transceiver coils. JOURNAL OF MAGNETIC RESONANCE OPEN 2024; 18:100142. [PMID: 38444623 PMCID: PMC10914335 DOI: 10.1016/j.jmro.2023.100142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
We describe an automated hands-off bench testing method for measuring the magnetic field profile of transceiver coils for nuclear magnetic resonance (NMR). The scattering parameter (S-parameter) data is measured using a portable network analyzer, and the results are automatically exported to a computer for plotting and viewing. This assay dramatically reduces the time needed to measure the magnetic field (B1) homogeneity profile of a transceiver coil while also improving accuracy relative to manual operation. Here, we demonstrate the method on a saddle coil of a solution-state NMR probe in comparison to profiles obtained using NMR spectroscopy measurements. We also measure the axial and radial homogeneity of a variable-pitch solenoid.
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Affiliation(s)
- Jose L Uribe
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Matthew D Jimenez
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Jessica I Kelz
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Jeanie Liang
- Department of Chemistry, University of California, Irvine 92697-2025
| | - Rachel W Martin
- Department of Chemistry, University of California, Irvine 92697-2025
- Department of Molecular Biology and Biochemistry, University of California, Irvine 92697-3900
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2
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Duong NT, Viel S, Ziarelli F, Thureau P, Mollica G. A facile approach for estimating radio-frequency field strength of low-receptivity nuclei. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2024; 358:107614. [PMID: 38141495 DOI: 10.1016/j.jmr.2023.107614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 12/03/2023] [Accepted: 12/15/2023] [Indexed: 12/25/2023]
Abstract
Radio-frequency (RF) field calibration is essential in NMR spectroscopy. A common practice is to collect a nutation curve by varying the pulse length in a direct single-pulse excitation experiment or in a cross-polarization magic-angle spinning with a flip-back pulse experiment. From the null points on this curve, one can calculate the RF field strength. Nevertheless, the practical implementation is not always straightforward or can even be unrealizable, especially for low-receptivity nuclei owing to their associated low sensitivity. Several researchers used an approach that involves utilizing other nuclei with more sensitivity but nearly identical Larmor frequencies to that of the nucleus of interest. However, such an approach has not been a common practice so far. In this work, we have systematically revisited this approach using 3.2 mm rotors on different sets of nuclei covering a Larmor frequency range up to 80 MHz. The effect of solid- and solution-states on RF field strength measurements has been investigated. The detection of each set of nuclei is then carried out with a resonant circuit in the NMR probe consisting of identical coils and capacitors. Our methodology is illustrated by recording 135/137Ba NMR spectra of BaTiO3 without prior 135/137Ba RF field calibration.
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Affiliation(s)
| | - Stéphane Viel
- Aix Marseille Univ, CNRS, ICR, Marseille, France; Institut Universitaire de France, Paris, France
| | - Fabio Ziarelli
- Aix Marseille Univ, CNRS, Centrale Méditerranée, FSCM, Marseille, France
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3
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Osborn Popp TM, Matchett BT, Green RG, Chhabra I, Mumudi S, Bernstein AD, Perodeau JR, Nieuwkoop AJ. 3D-Printable centrifugal devices for biomolecular solid state NMR rotors. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023; 354:107524. [PMID: 37481918 PMCID: PMC10528322 DOI: 10.1016/j.jmr.2023.107524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/13/2023] [Accepted: 07/13/2023] [Indexed: 07/25/2023]
Abstract
The advent of magic angle spinning (MAS) rates exceeding 100 kHz has facilitated the acquisition of 1H-detected solid-state NMR spectra of biomolecules with high resolution. However, challenges can arise when preparing rotors for these experiments, due to the physical properties of biomolecular solid samples and the small dimensions of the rotors. In this study, we have designed 3D-printable centrifugal devices that facilitate efficient and consistent packing of crystalline protein slurries or viscous phospholipids into 0.7 mm rotors. We demonstrate the efficacy of these packing devices using 1H-detected solid state NMR at 105 kHz. In addition to devices for 0.7 mm rotors, we have also developed devices for other frequently employed rotor sizes and styles. We have made all our designs openly accessible, and we encourage their usage and ongoing development as a shared effort within the solid state NMR community.
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Affiliation(s)
- Thomas M Osborn Popp
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States.
| | - Brandon T Matchett
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Rashawn G Green
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Insha Chhabra
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Smriti Mumudi
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Ashley D Bernstein
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Jacqueline R Perodeau
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States
| | - Andrew J Nieuwkoop
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New, Jersey, Piscataway, NJ 08854, United States.
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4
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Nishiyama Y, Hou G, Agarwal V, Su Y, Ramamoorthy A. Ultrafast Magic Angle Spinning Solid-State NMR Spectroscopy: Advances in Methodology and Applications. Chem Rev 2023; 123:918-988. [PMID: 36542732 PMCID: PMC10319395 DOI: 10.1021/acs.chemrev.2c00197] [Citation(s) in RCA: 22] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Solid-state NMR spectroscopy is one of the most commonly used techniques to study the atomic-resolution structure and dynamics of various chemical, biological, material, and pharmaceutical systems spanning multiple forms, including crystalline, liquid crystalline, fibrous, and amorphous states. Despite the unique advantages of solid-state NMR spectroscopy, its poor spectral resolution and sensitivity have severely limited the scope of this technique. Fortunately, the recent developments in probe technology that mechanically rotate the sample fast (100 kHz and above) to obtain "solution-like" NMR spectra of solids with higher resolution and sensitivity have opened numerous avenues for the development of novel NMR techniques and their applications to study a plethora of solids including globular and membrane-associated proteins, self-assembled protein aggregates such as amyloid fibers, RNA, viral assemblies, polymorphic pharmaceuticals, metal-organic framework, bone materials, and inorganic materials. While the ultrafast-MAS continues to be developed, the minute sample quantity and radio frequency requirements, shorter recycle delays enabling fast data acquisition, the feasibility of employing proton detection, enhancement in proton spectral resolution and polarization transfer efficiency, and high sensitivity per unit sample are some of the remarkable benefits of the ultrafast-MAS technology as demonstrated by the reported studies in the literature. Although the very low sample volume and very high RF power could be limitations for some of the systems, the advantages have spurred solid-state NMR investigation into increasingly complex biological and material systems. As ultrafast-MAS NMR techniques are increasingly used in multidisciplinary research areas, further development of instrumentation, probes, and advanced methods are pursued in parallel to overcome the limitations and challenges for widespread applications. This review article is focused on providing timely comprehensive coverage of the major developments on instrumentation, theory, techniques, applications, limitations, and future scope of ultrafast-MAS technology.
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Affiliation(s)
- Yusuke Nishiyama
- JEOL Ltd., Akishima, Tokyo196-8558, Japan
- RIKEN-JEOL Collaboration Center, Yokohama, Kanagawa230-0045, Japan
| | - Guangjin Hou
- State Key Laboratory of Catalysis, Dalian National Laboratory for Clean Energy, 2011-Collaborative Innovation Center of Chemistry for Energy Materials, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian116023, China
| | - Vipin Agarwal
- Tata Institute of Fundamental Research, Sy. No. 36/P, Gopanpally, Hyderabad500 046, India
| | - Yongchao Su
- Analytical Research and Development, Merck & Co., Inc., Rahway, New Jersey07065, United States
| | - Ayyalusamy Ramamoorthy
- Biophysics, Department of Chemistry, Biomedical Engineering, Macromolecular Science and Engineering, Michigan Neuroscience Institute, University of Michigan, Ann Arbor, Michigan41809-1055, United States
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5
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Chevelkov V, Lange S, Sawczyc H, Lange A. Accurate Determination of Motional Amplitudes in Biomolecules by Solid-State NMR. ACS PHYSICAL CHEMISTRY AU 2023; 3:199-206. [PMID: 36968444 PMCID: PMC10037497 DOI: 10.1021/acsphyschemau.2c00053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 12/19/2022] [Accepted: 12/20/2022] [Indexed: 01/06/2023]
Abstract
Protein dynamics are an intrinsically important factor when considering a protein's biological function. Understanding these motions is often limited through the use of static structure determination methods, namely, X-ray crystallography and cryo-EM. Molecular simulations have allowed for the prediction of global and local motions of proteins from these static structures. Nevertheless, determining local dynamics at residue-specific resolution through direct measurement remains crucial. Solid-state nuclear magnetic resonance (NMR) is a powerful tool for studying dynamics in rigid or membrane-bound biomolecules without prior structural knowledge with the help of relaxation parameters such as T 1 and T 1ρ. However, these provide only a combined result of amplitude and correlation times in the nanosecond-millisecond frequency range. Thus, direct and independent determination of the amplitude of motions might considerably improve the accuracy of dynamics studies. In an ideal situation, the use of cross-polarization would be the optimal method for measuring the dipolar couplings between chemically bound heterologous nuclei. This would unambiguously provide the amplitude of motion per residue. In practice, however, the inhomogeneity of the applied radio-frequency fields across the sample leads to significant errors. Here, we present a novel method to eliminate this issue through including the radio-frequency distribution map in the analysis. This allows for direct and accurate measurement of residue-specific amplitudes of motion. Our approach has been applied to the cytoskeletal protein BacA in filamentous form, as well as to the intramembrane protease GlpG in lipid bilayers.
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Affiliation(s)
- Veniamin Chevelkov
- Research Unit Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125Berlin, Germany
| | - Sascha Lange
- Research Unit Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125Berlin, Germany
| | - Henry Sawczyc
- Research Unit Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125Berlin, Germany
| | - Adam Lange
- Research Unit Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125Berlin, Germany
- Institut für Biologie, Humboldt-Universität zu Berlin, Invalidenstraße 42, 10115Berlin, Germany
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6
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Nagashima H, Trébosc J, Kon Y, Lafon O, Amoureux JP. Efficient transfer of DNP-enhanced 1 H magnetization to half-integer quadrupolar nuclei in solids at moderate spinning rate. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:920-939. [PMID: 33300128 DOI: 10.1002/mrc.5121] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 12/02/2020] [Accepted: 12/05/2020] [Indexed: 06/12/2023]
Abstract
We show herein how the proton magnetization enhanced by dynamic nuclear polarization (DNP) can be efficiently transferred at moderate magic-angle spinning (MAS) frequencies to half-integer quadrupolar nuclei, S ≥ 3/2, using the Dipolar-mediated Refocused Insensitive Nuclei Enhanced by Polarization Transfer (D-RINEPT) technique, in which a symmetry-based SR 4 1 2 recoupling scheme built from adiabatic inversion 1 H pulses reintroduces the 1 H-S dipolar couplings, while suppressing the 1 H-1 H ones. The use of adiabatic pulses also improves the robustness to offsets and radiofrequency (rf)-field inhomogeneity. Furthermore, the efficiency of the polarization transfer is further improved by using 1 H composite pulses and continuous-wave irradiations between the recoupling blocks, as well as by manipulating the S satellite transitions during the first recoupling block. Furthermore, in the case of large 1 H-S dipolar couplings, the D-RINEPT variant with two pulses on the quadrupolar channel results in an improved transfer efficiency. We compare here the performances of this new adiabatic scheme with those of its parent version with single π pulses, as well as with those of PRESTO and CPMAS transfers. This comparison is performed using simulations as well as DNP-enhanced 27 Al, 95 Mo, and 17 O NMR experiments on isotopically unmodified γ-alumina, hydrated titania-supported MoO3 , Mg(OH)2 , and l-histidine·HCl·H2 O. The introduced RINEPT method outperforms the existing methods, both in terms of efficiency and robustness to rf-field inhomogeneity and offset.
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Affiliation(s)
- Hiroki Nagashima
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Julien Trébosc
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Univ. Lille, CNRS, INRAE, Centrale Lille, Univ. Artois, FR 2638 - IMEC - Institut Michel-Eugène Chevreul, Lille, France
| | - Yoshihiro Kon
- Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8565, Japan
| | - Olivier Lafon
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Institut Universitaire de France, France
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS, Centrale Lille, Univ. Artois, UMR 8181-UCCS-Unité de Catalyse et de Chimie du Solide, Lille, France
- Bruker BioSpin, Wissembourg, France
- NMR Science and Development Division, Riken, Yokohama, Japan
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7
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Duong NT, Trébosc J, Lafon O, Amoureux JP. Improved sensitivity and quantification for 29Si NMR experiments on solids using UDEFT (Uniform Driven Equilibrium Fourier Transform). SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 100:52-62. [PMID: 30959243 DOI: 10.1016/j.ssnmr.2019.03.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 03/21/2019] [Accepted: 03/21/2019] [Indexed: 06/09/2023]
Abstract
We demonstrate the possibility to use UDEFT (Uniform Driven Equilibrium Fourier Transform) technique in order to improve the sensitivity and the quantification of one-dimensional 29Si NMR experiments under magic-angle spinning (MAS). We derive an analytical expression of the signal-to-noise ratios of UDEFT and single-pulse (SP) experiments subsuming the contributions of transient and steady-state regimes. Using numerical spin dynamics simulations and experiments on 29Si-enriched amorphous silica and borosilicate glass, we show that 59180298059180 refocusing composite π-pulse and the adiabatic inversion using tanh/tan modulation improve the robustness of UDEFT technique to rf-inhomogeneity, offset, and chemical shift anisotropy. These pulses combined with a two-step phase cycle limit the pulse imperfections and the artifacts produced by stimulated echoes. The sensitivity of SP, UDEFT and CPMG (Carr-Purcell-Meiboom-Gill) techniques are experimentally compared on functionalized and non-functionalized mesoporous silica. Furthermore, experiments on a flame retardant material prove that UDEFT technique provides a better quantification of 29Si sites with higher sensitivity than SP method.
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Affiliation(s)
- Nghia Tuan Duong
- Univ. Lille, Centrale Lille, ENSCL, Univ. Artois, CNRS-8181, UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France
| | - Julien Trébosc
- Univ. Lille, Centrale Lille, ENSCL, Univ. Artois, CNRS-8181, UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Univ. Lille, CNRS-FR2638, Fédération Chevreul, F-59000 Lille, France.
| | - Olivier Lafon
- Univ. Lille, Centrale Lille, ENSCL, Univ. Artois, CNRS-8181, UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Institut Universitaire de France, 1 rue Descartes, F-75231 Paris, France
| | - Jean-Paul Amoureux
- Univ. Lille, Centrale Lille, ENSCL, Univ. Artois, CNRS-8181, UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Bruker Biospin, 34 rue de l'industrie, F-67166 Wissembourg, France.
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8
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Kelz JI, Kelly JE, Martin RW. 3D-printed dissolvable inserts for efficient and customizable fabrication of NMR transceiver coils. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 305:89-92. [PMID: 31229757 PMCID: PMC6656594 DOI: 10.1016/j.jmr.2019.06.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2018] [Revised: 06/01/2019] [Accepted: 06/14/2019] [Indexed: 06/09/2023]
Abstract
We describe a simplified method for improving the reproducibility of transceiver coil fabrication for nuclear magnetic resonance (NMR) through single-use templates made from 3D-printed polymer forms. The utility of dissolvable inserts for achieving performance enhanced resonators (DIAPERs) is tested herein by a comparison of RF homogeneity along the rotor axis for variable-pitch solenoids with different inter-turn spacing. Simulated B1 field profiles are compared to experimental homogeneity measurements, demonstrating the potential of this approach for making NMR coils quickly and reproducibly.
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Affiliation(s)
- Jessica I Kelz
- Department of Chemistry, University of California, Irvine 92697-2025, United States
| | - John E Kelly
- Department of Chemistry, University of California, Irvine 92697-2025, United States
| | - Rachel W Martin
- Department of Chemistry, University of California, Irvine 92697-2025, United States; Department of Molecular Biology and Biochemistry, University of California, Irvine 92697-3900, United States.
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9
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Rankin AGM, Trébosc J, Paluch P, Lafon O, Amoureux JP. Evaluation of excitation schemes for indirect detection of 14N via solid-state HMQC NMR experiments. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 303:28-41. [PMID: 30999136 DOI: 10.1016/j.jmr.2019.04.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Revised: 04/03/2019] [Accepted: 04/04/2019] [Indexed: 06/09/2023]
Abstract
It has previously been shown that 14N NMR spectra can be reliably obtained through indirect detection via HMQC experiments. This method exploits the transfer of coherence between single-(SQ) or double-quantum (DQ) 14N coherences, and SQ coherences of a suitable spin-1/2 'spy' nucleus, e.g., 1H. It must be noted that SQ-SQ methods require a carefully optimized setup to minimize the broadening related to the first-order quadrupole interaction (i.e., an extremely well-adjusted magic angle and a highly stable spinning speed), whereas DQ-SQ ones do not. In this work, the efficiencies of four 14N excitation schemes (DANTE, XiX, Hard Pulse (HP), and Selective Long Pulse (SLP)) are compared using J-HMQC based numerical simulations and either SQ-SQ or DQ-SQ 1H-{14N} D-HMQC experiments on l-histidine HCl and N-acetyl-l-valine at 18.8 T and 62.5 kHz MAS. The results demonstrate that both DANTE and SLP provide a more efficient 14N excitation profile than XiX and HP. Furthermore, it is shown that the SLP scheme: (i) is efficient over a large range of quadrupole interaction, (ii) is highly robust to offset and rf-pulse length and amplitude, and (iii) is very simple to set up. These factors make SLP ideally suited to widespread, non-specialist use in solid-state NMR analyses of nitrogen-containing materials.
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Affiliation(s)
- Andrew G M Rankin
- Univ. Lille, CNRS, Centrale Lille, ENSCL, Univ. Artois, UMR 8181 - UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France.
| | - Julien Trébosc
- Univ. Lille, CNRS, Centrale Lille, ENSCL, Univ. Artois, UMR 8181 - UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Univ. Lille, CNRS-FR2638, Fédération Chevreul, F-59000 Lille, France
| | - Piotr Paluch
- Univ. Lille, CNRS, Centrale Lille, ENSCL, Univ. Artois, UMR 8181 - UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Sienkiewicza 112, PL-90363 Lodz, Poland
| | - Olivier Lafon
- Univ. Lille, CNRS, Centrale Lille, ENSCL, Univ. Artois, UMR 8181 - UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Institut Universitaire de France, 1 rue Descartes, F-75231 Paris Cedex 05, France
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS, Centrale Lille, ENSCL, Univ. Artois, UMR 8181 - UCCS - Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Bruker Biospin, 34 rue de l'industrie, F-67166 Wissembourg, France.
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Perras FA, Goh TW, Wang LL, Huang W, Pruski M. Enhanced 1H-X D-HMQC performance through improved 1H homonuclear decoupling. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 98:12-18. [PMID: 30669006 DOI: 10.1016/j.ssnmr.2019.01.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 01/05/2019] [Accepted: 01/06/2019] [Indexed: 06/09/2023]
Abstract
The sensitivity of solid-state NMR experiments that utilize 1H zero-quantum heteronuclear dipolar recoupling, such as D-HMQC, is compromised by poor homonuclear decoupling. This leads to a rapid decay of recoupled magnetization and an inefficient recoupling of long-range dipolar interactions, especially for nuclides with low gyromagnetic ratios. We investigated the use, in symmetry-based 1H heteronuclear recoupling sequences, of a basic R element that was principally designed for efficient homonuclear decoupling. By shortening the time required to suppress the effects of homonuclear dipolar interactions to the duration of a single inversion pulse, spin diffusion was effectively quenched and long-lived recoupled coherence lifetimes could be obtained. We show, both theoretically and experimentally, that these modified sequences can yield considerable sensitivity improvements over the current state-of-the-art methods and applied them to the indirect detection of 89Y in a metal-organic framework.
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Affiliation(s)
| | - Tian Wei Goh
- US Department of Energy, Ames Laboratory, Ames, IA, 50011, USA; Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
| | - Lin-Lin Wang
- US Department of Energy, Ames Laboratory, Ames, IA, 50011, USA
| | - Wenyu Huang
- US Department of Energy, Ames Laboratory, Ames, IA, 50011, USA; Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
| | - Marek Pruski
- US Department of Energy, Ames Laboratory, Ames, IA, 50011, USA; Department of Chemistry, Iowa State University, Ames, IA, 50011, USA.
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11
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Giovine R, Trébosc J, Pourpoint F, Lafon O, Amoureux JP. Magnetization transfer from protons to quadrupolar nuclei in solid-state NMR using PRESTO or dipolar-mediated refocused INEPT methods. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2019; 299:109-123. [PMID: 30594000 DOI: 10.1016/j.jmr.2018.12.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Revised: 12/11/2018] [Accepted: 12/17/2018] [Indexed: 06/09/2023]
Abstract
In solid-state NMR spectroscopy, the through-space transfer of magnetization from protons to quadrupolar nuclei is employed to probe proximities between those isotopes. Furthermore, such transfer, in conjunction with Dynamic Nuclear Polarization (DNP), can enhance the NMR sensitivity of quadrupolar nuclei, as it allows the transfer of DNP-enhanced 1H polarization to surrounding nuclei. We compare here the performances of two approaches to achieve such transfer: PRESTO (Phase-shifted Recoupling Effects a Smooth Transfer of Order), which is currently the method of choice to achieve the magnetization transfer from protons to quadrupolar nuclei and which has been shown to supersede Cross-Polarization under Magic-Angle Spinning (MAS) for quadrupolar nuclei and D-RINEPT (Dipolar-mediated Refocused Insensitive Nuclei Enhanced by Polarization Transfer) using symmetry-based SR412 recoupling, which has already been employed to transfer the magnetization in the reverse way from half-integer quadrupolar spin to protons. We also test the PRESTO sequence with R1676 recoupling using 270090180 composite π-pulses as inversion elements. This recoupling scheme, which has previously been proposed to reintroduce 1H Chemical Shift Anisotropy (CSA) at high MAS frequencies with high robustness to rf-field inhomogeneity, has not so far been employed to reintroduce dipolar couplings with protons. These various techniques to transfer magnetization from protons to quadrupolar nuclei are analyzed using (i) an average Hamiltonian theory, (ii) numerical simulations of spin dynamics, and (iii) experimental 1H → 27Al and 1H → 17O transfers in as-synthesized AlPO4-14 and 17O-labelled fumed silica, respectively. The experiments and simulations are done at two magnetic fields (9.4 and 18.8 T) and several spinning speeds (15, 18-24 and 60 kHz). This analysis indicates that owing to its γ-encoded character, PRESTO yields the highest transfer efficiency at low magnetic fields and MAS frequencies, whereas owing to its higher robustness to rf-field inhomogeneity and chemical shifts, D-RINEPT is more sensitive at high fields and MAS frequencies, notably for protons exhibiting large offset or CSA, such as those involved in hydrogen bonds.
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Affiliation(s)
- Raynald Giovine
- Univ. Lille, CNRS-8181, UCCS: Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France
| | - Julien Trébosc
- Univ. Lille, CNRS-8181, UCCS: Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France
| | - Frédérique Pourpoint
- Univ. Lille, CNRS-8181, UCCS: Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France
| | - Olivier Lafon
- Univ. Lille, CNRS-8181, UCCS: Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; IUF, Institut Universitaire de France, 1 rue Descartes, 75231 Paris, France.
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS-8181, UCCS: Unit of Catalysis and Chemistry of Solids, F-59000 Lille, France; Bruker France, 34 rue de l'Industrie, F-67166 Wissembourg, France.
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Nagashima H, Lilly Thankamony AS, Trébosc J, Montagne L, Kerven G, Amoureux JP, Lafon O. Observation of proximities between spin-1/2 and quadrupolar nuclei in solids: Improved robustness to chemical shielding using adiabatic symmetry-based recoupling. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2018; 94:7-19. [PMID: 30103084 DOI: 10.1016/j.ssnmr.2018.07.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 07/17/2018] [Accepted: 07/17/2018] [Indexed: 06/08/2023]
Abstract
We introduce a novel heteronuclear dipolar recoupling based on the R21-1 symmetry, which uses the tanh/tan (tt) shaped pulse as a basic inversion element and is denoted R21-1(tt). Using first-order average Hamiltonian theory, we show that this sequence is non-γ-encoded and that it reintroduces the |m| = 1 spatial component of the Chemical Shift Anisotropy (CSA) of the irradiated isotope and its heteronuclear dipolar interactions. Using numerical simulations and one-dimensional (1D) 27Al-{31P} through-space D-HMQC (Dipolar Heteronuclear Multiple-Quantum Correlation) experiments on VPI-5, we compare the performances of this recoupling to those of other non-γ-encoded |m| = 1 heteronuclear recoupling schemes: REDOR (Rotational-Echo DOuble Resonance), SFAM (Simultaneous Frequency and Amplitude Modulation) and R42-1(tt). Such comparison indicates that the R21-1(tt) scheme is more robust to CSA, offset and radiofrequency field inhomogeneities than the other schemes. We take advantage of the high robustness of R21-1(tt) to CSA and offset to demonstrate the possibility to correlate the signals of 207Pb isotope with those of neighboring half-integer spin quadrupolar nuclei. Such approach is demonstrated experimentally by acquiring 11B-{207Pb} D-HMQC 2D spectra of Pb4O(BO3)2 crystalline powder.
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Affiliation(s)
- Hiroki Nagashima
- Univ. Lille, CNRS-8181, UCCS-Unit of Catalysis and Chemistry of Solids, F-59000, Lille, France; Interdisciplinary Research Center for Catalytic Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8565, Japan
| | | | - Julien Trébosc
- Univ. Lille, CNRS-8181, UCCS-Unit of Catalysis and Chemistry of Solids, F-59000, Lille, France
| | - Lionel Montagne
- Univ. Lille, CNRS-8181, UCCS-Unit of Catalysis and Chemistry of Solids, F-59000, Lille, France
| | - Gwendal Kerven
- Univ. Lorraine, CNRS-7036, CRM2, F-54506, Vandœuvre-lès-Nancy, France
| | - Jean-Paul Amoureux
- Univ. Lille, CNRS-8181, UCCS-Unit of Catalysis and Chemistry of Solids, F-59000, Lille, France; Bruker Biospin, 34 rue de l'industrie, F-67166, Wissembourg, France.
| | - Olivier Lafon
- Univ. Lille, CNRS-8181, UCCS-Unit of Catalysis and Chemistry of Solids, F-59000, Lille, France; Institut Universitaire de France, 1 rue Descartes, F-75231, Paris, France.
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Martin RW, Kelly JE, Kelz JI. Advances in instrumentation and methodology for solid-state NMR of biological assemblies. J Struct Biol 2018; 206:73-89. [PMID: 30205196 DOI: 10.1016/j.jsb.2018.09.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 07/08/2018] [Accepted: 09/06/2018] [Indexed: 01/11/2023]
Abstract
Many advances in instrumentation and methodology have furthered the use of solid-state NMR as a technique for determining the structures and studying the dynamics of molecules involved in complex biological assemblies. Solid-state NMR does not require large crystals, has no inherent size limit, and with appropriate isotopic labeling schemes, supports solving one component of a complex assembly at a time. It is complementary to cryo-EM, in that it provides local, atomic-level detail that can be modeled into larger-scale structures. This review focuses on the development of high-field MAS instrumentation and methodology; including probe design, benchmarking strategies, labeling schemes, and experiments that enable the use of quadrupolar nuclei in biomolecular NMR. Current challenges facing solid-state NMR of biological assemblies and new directions in this dynamic research area are also discussed.
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Affiliation(s)
- Rachel W Martin
- Department of Chemistry, University of California, Irvine 92697-2025, United States; Department of Molecular Biology and Biochemistry, University of California, Irvine 92697-3900, United States.
| | - John E Kelly
- Department of Chemistry, University of California, Irvine 92697-2025, United States
| | - Jessica I Kelz
- Department of Chemistry, University of California, Irvine 92697-2025, United States
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Krushelnitsky A, Gauto D, Rodriguez Camargo DC, Schanda P, Saalwächter K. Microsecond motions probed by near-rotary-resonance R 1ρ15N MAS NMR experiments: the model case of protein overall-rocking in crystals. JOURNAL OF BIOMOLECULAR NMR 2018; 71:53-67. [PMID: 29845494 PMCID: PMC5986846 DOI: 10.1007/s10858-018-0191-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 05/26/2018] [Indexed: 05/27/2023]
Abstract
Solid-state near-rotary-resonance measurements of the spin-lattice relaxation rate in the rotating frame (R1ρ) is a powerful NMR technique for studying molecular dynamics in the microsecond time scale. The small difference between the spin-lock (SL) and magic-angle-spinning (MAS) frequencies allows sampling very slow motions, at the same time it brings up some methodological challenges. In this work, several issues affecting correct measurements and analysis of 15N R1ρ data are considered in detail. Among them are signal amplitude as a function of the difference between SL and MAS frequencies, "dead time" in the initial part of the relaxation decay caused by transient spin-dynamic oscillations, measurements under HORROR condition and proper treatment of the multi-exponential relaxation decays. The multiple 15N R1ρ measurements at different SL fields and temperatures have been conducted in 1D mode (i.e. without site-specific resolution) for a set of four different microcrystalline protein samples (GB1, SH3, MPD-ubiquitin and cubic-PEG-ubiquitin) to study the overall protein rocking in a crystal. While the amplitude of this motion varies very significantly, its correlation time for all four sample is practically the same, 30-50 μs. The amplitude of the rocking motion correlates with the packing density of a protein crystal. It has been suggested that the rocking motion is not diffusive but likely a jump-like dynamic process.
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Affiliation(s)
| | - Diego Gauto
- Institut de Biologie Structurale (IBS), Grenoble Cedex 9, France
| | | | - Paul Schanda
- Institut de Biologie Structurale (IBS), Grenoble Cedex 9, France
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