1
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Ferrer M, Alkorta I, Elguero J, Oliva-Enrich JM. (Pyridin-2-ylmethyl)triel Derivatives as Masked Frustrated Lewis Pairs. Interactions and CO 2 -Sequestration. Chemphyschem 2024; 25:e202300750. [PMID: 38215389 DOI: 10.1002/cphc.202300750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 01/12/2024] [Accepted: 01/12/2024] [Indexed: 01/14/2024]
Abstract
The isolated (pyridin-2-ylmethyl)triel derivatives (triel=B, Al and Ga) show an intramolecular N⋅⋅⋅Tr triel bond as shown by compounds found in the Cambridge Structural Database and DFT calculations. The possibility to use them as masked frustrated Lewis pairs (mFLP) has been explored theoretically concerning their reaction with CO2 . The adduct formation proceeds in two steps. In the first one, the (pyridin-2-ylmethyl)triel derivatives break the intramolecular N⋅⋅⋅Tr bond assisted by CO2 and in the second step the adduct is formed with Tr-O and N-C covalent bonds. The corresponding energy minima and transition states (TS) of the reaction have been characterized and analyzed. The distortion/interaction model analysis of the stationary points indicates that the whole process can be divided in two parts: reorganization of the mFLP in the first steps of the reaction while the reaction with CO2 (associated to the distortion of this molecule) is more important in the formation of the final adduct. In all cases studied, the final products are more stable than the starting molecules that combine with reasonable TS energies indicating that these reactions can occur.
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Affiliation(s)
- Maxime Ferrer
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
- PhD Program in Theoretical Chemistry and Computational Modeling, Doctoral School, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
| | - Jose Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
| | - Josep M Oliva-Enrich
- Instituto de Química-Física Blas Cabrera (CSIC), Serrano, 119, 28006, Madrid, Spain
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2
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Leškovskis K, Mishnev A, Novosjolova I, Turks M. Structural Study of Azide-Tetrazole Equilibrium in Pyrido[2,3-d]pyrimidines. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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3
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Voloshkin VA, Kotovshchikov YN, Latyshev GV, Lukashev NV, Beletskaya IP. Annulation-Triggered Denitrogenative Transformations of 2-(5-Iodo-1,2,3-triazolyl)benzoic Acids. J Org Chem 2022; 87:7064-7075. [PMID: 35583492 DOI: 10.1021/acs.joc.2c00235] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The ability of [1,2,3]triazolobenzoxazinones to act as a source of "hidden" diazo group was discovered. These diazo precursors can be easily prepared by the intramolecular cyclization of 2-(5-iodo-1,2,3-triazolyl)benzoic acids. The Cu-catalyzed capture of the hidden diazo group allows for further functionalization through the denitrogenative pathway. The transformations proceed via the formation of either diazoimine or diazoamide intermediates. Novel routes to various anthranilamides as well as thiolated benzoxazinones were developed using the one-pot cyclization/diazo capture procedure.
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Affiliation(s)
- Vladislav A Voloshkin
- Chemistry Department, M. V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, Moscow 119991, Russia
| | - Yury N Kotovshchikov
- Chemistry Department, M. V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, Moscow 119991, Russia
| | - Gennadij V Latyshev
- Chemistry Department, M. V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, Moscow 119991, Russia
| | - Nikolay V Lukashev
- Chemistry Department, M. V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, Moscow 119991, Russia
| | - Irina P Beletskaya
- Chemistry Department, M. V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, Moscow 119991, Russia
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4
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Deev SL, Shestakova TS, Shenkarev ZO, Paramonov AS, Khalymbadzha IA, Eltsov OS, Charushin VN, Chupakhin ON. 15N Chemical Shifts and JNN-Couplings as Diagnostic Tools for Determination of the Azide-Tetrazole Equilibrium in Tetrazoloazines. J Org Chem 2021; 87:211-222. [PMID: 34941254 DOI: 10.1021/acs.joc.1c02225] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Selectively 15N-labeled tetrazolo[1,5-b][1,2,4]triazines and tetrazolo[1,5-a]pyrimidines bearing one, two, or three 15N labels were synthesized. The synthesized compounds were studied by 1H, 13C, and 15N NMR spectroscopy in DMSO and TFA solutions, where the azide-tetrazole equilibrium can lead to the formation of two tetrazole (T, T') isomers and one azide (A) isomer for each compound. Incorporation of the 15N-label(s) leads to the appearance of 15N-15N coupling constants (JNN), which can be easily measured via simple 1D 15N NMR spectra, even at natural abundance between labeled and unlabeled 15N atoms. The chemical shifts for the 15N nuclei in the azole moiety are very sensitive to the ring opening and azide formation, thus providing information about the azido-tetrazole equilibrium. At the same time, the 1-2JNN couplings between 15N-labeled atoms in the azole and azine fragments unambiguously determine the fusion type between tetrazole and azine rings in the cyclic isomers T and T'. Thus, combined analysis of 15N chemical shifts and JNN values in selectively isotope-enriched compounds provides an effective diagnostic tool for direct structural determination of tetrazole isomers and azide form in solution. This method was found to be the most simple and efficient way to study the azido-tetrazole equilibrium.
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Affiliation(s)
- Sergey L Deev
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Tatyana S Shestakova
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Zakhar O Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
| | - Alexander S Paramonov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
| | - Igor A Khalymbadzha
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Oleg S Eltsov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Valery N Charushin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia.,I. Ya. Postovsky Institute of Organic Synthesis of Ural Branch of the Russian Academy of Sciences, 22 Sofya Kovalevskaya Street, 620108 Yekaterinburg, Russia
| | - Oleg N Chupakhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia.,I. Ya. Postovsky Institute of Organic Synthesis of Ural Branch of the Russian Academy of Sciences, 22 Sofya Kovalevskaya Street, 620108 Yekaterinburg, Russia
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5
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Leyva-Ramos S, Cardoso-Ortiz J. Recent Developments in the Synthesis of Tetrazoles and their Pharmacological Relevance. CURR ORG CHEM 2021. [DOI: 10.2174/1385272824999201210193344] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The heterocycle ring tetrazole is an important moiety relevant to medicinal chemistry
since it is present in some drugs with clinical importance. Its primary biological activity is
being a bioisosteric analogue of the carboxylic acid and cis-amide groups. Its metabolic stability
and other physicochemical properties make it an attractive structure for designing and synthesizing
new pharmaceuticals. The biological activity of tetrazoles is quite extensive and
includes antiviral, antibacterial, anticancer, antifungal, and antioxidant properties; all of them
are discussed in this review. The most effective way to obtain tetrazoles is by azide derivatives,
either in the starting materials by the cycloaddition [3 + 2] of organic azides and nitriles
or by preparing a reactive imidoyl azide intermediate. The nucleophilic behavior of the azide
group is discussed when the raw materials include isocyanides. Some other methods include
alternative synthetic routes like thermolysis. This review also highlights some of the developments regarding the use
of different heterogeneous catalysts to synthesize several tetrazole derivatives.
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Affiliation(s)
- Socorro Leyva-Ramos
- Facultad de Ciencias Quimicas, Universidad Autonoma de San Luis Potosi, San Luis Potosi, Mexico
| | - Jaime Cardoso-Ortiz
- Unidad Academica de Ciencias Quimicas, Universidad Autonoma de Zacatecas, Zacatecas, Mexico
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6
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Farghaly TA, Al-Hussain SA, Muhammad ZA, Abdallah MA, Zaki MEA. Synthesis and Reactions of Perimidines and Their Fused Systems. CURR ORG CHEM 2020. [DOI: 10.2174/1385272824999200622113807] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Perimidines are peri-naphtho-fused derivatives of pyrimidine. They are of particular
interest as they are a rare example of an azine in which the lone pair of electrons of
pyrrole-like nitrogen participates in the π-system of the molecule. Perimidine is an interesting
class of heterocyclic compounds. Various synthetic analogs of perimidines have been
prepared and evaluated for many pharmacological activities in different models with desired
findings. They exhibit biological activities as antitumor, antiulcer, antimicrobial, and antifungal
agents. This review is an attempt to organize the synthesis and chemical reactions of
perimidine analogs reported to date systematically since 1955. It should be noted that this
review is the first one that includes the preparation and reactions of the perimidine ring.
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Affiliation(s)
- Thoraya A. Farghaly
- Department of Chemistry, Faculty of Science, Cairo University, Giza, 12613, Egypt
| | - Sami A. Al-Hussain
- Department of Chemistry, Faculty of Science, Al-Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Saudi Arabia
| | - Zeinab A. Muhammad
- Department of Organic Chemistry, National Organization for Drug Control and Research (NODCAR), Giza 12311, Egypt
| | - Magda A. Abdallah
- Department of Chemistry, Faculty of Science, Cairo University, Giza, 12613, Egypt
| | - Magdi E. A. Zaki
- Department of Chemistry, Faculty of Science, Al-Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Saudi Arabia
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7
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Gorn MV, Gritsan NP, Goldsmith CF, Kiselev VG. Thermal Stability of Bis-Tetrazole and Bis-Triazole Derivatives with Long Catenated Nitrogen Chains: Quantitative Insights from High-Level Quantum Chemical Calculations. J Phys Chem A 2020; 124:7665-7677. [DOI: 10.1021/acs.jpca.0c04985] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Margarita V. Gorn
- Novosibirsk State University, 1 Pirogova Street, Novosibirsk 630090, Russia
- Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Street, Novosibirsk 630090, Russia
| | - Nina P. Gritsan
- Novosibirsk State University, 1 Pirogova Street, Novosibirsk 630090, Russia
- Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Street, Novosibirsk 630090, Russia
| | - C. Franklin Goldsmith
- Brown University, School of Engineering, 184 Hope Street, Providence, Rhode Island 02912, United States
| | - Vitaly G. Kiselev
- Novosibirsk State University, 1 Pirogova Street, Novosibirsk 630090, Russia
- Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Street, Novosibirsk 630090, Russia
- Brown University, School of Engineering, 184 Hope Street, Providence, Rhode Island 02912, United States
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8
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Sahiba N, Agarwal S. Recent Advances in the Synthesis of Perimidines and their Applications. Top Curr Chem (Cham) 2020; 378:44. [PMID: 32776212 PMCID: PMC7415412 DOI: 10.1007/s41061-020-00307-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2020] [Accepted: 07/25/2020] [Indexed: 01/11/2023]
Abstract
Perimidines are versatile scaffolds and a fascinating class of N-heterocycles that have evolved significantly in recent years due to their immense applications in life sciences, medical sciences, and industrial chemistry. Their ability of molecular interaction with different proteins, complex formation with metals, and distinct behavior in various ranges of light makes them more appealing and challenging for future scientists. Various novel technologies have been developed for the selective synthesis of perimidines and their conjugated derivatives. These methods extend to the preparation of different bioactive and industrially applicable molecules. This review aims to present the most recent advancements in perimidine synthesis under varied conditions like MW radiation, ultrasound, and grinding using different catalysts such as ionic liquids, acid, metal, and nanocatalyst and also under green environments like catalyst and solvent-free synthesis. The applications of perimidine derivatives in drug discovery, polymer chemistry, photo sensors, dye industries, and catalytic activity in organic synthesis are discussed in this survey. This article is expected to be a systematic, authoritative, and critical review on the chemistry of perimidines that compiles most of the state-of-art innovation in this area.
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Affiliation(s)
- Nusrat Sahiba
- Synthetic Organic Chemistry Laboratory, Department of Chemistry, MLSU, Udaipur, 313001 India
| | - Shikha Agarwal
- Synthetic Organic Chemistry Laboratory, Department of Chemistry, MLSU, Udaipur, 313001 India
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9
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Yegorova TV, Kysil AI, Dyakonenko VV, Levkov IV, Karbovska RV, Shishkina SV, Voitenko ZV. Azido-tetrazole isomerism in 2,2-dimethyl-1-(1-methyl-1H-tetrazolo[5,1-a]isoindol-5-yl)propan-1-one. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127469] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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10
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Elguero E, Alkorta I, Elguero J. A theoretical study of the properties of ninety-two “aromatic” six-membered rings including benzene, azines, phosphinines and azaphosphinines. HETEROATOM CHEMISTRY 2018. [DOI: 10.1002/hc.21441] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Eric Elguero
- UMR CNRS 5290, IRD, 911; MIVEGEC (Maladies Infectieuses et Vecteurs, Génétique, Evolution et Contrôle); Montpellier France
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11
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Eldeab HA, Eweas AF. A Greener Approach Synthesis and Docking Studies of Perimidine Derivatives as Potential Anticancer Agents. J Heterocycl Chem 2017. [DOI: 10.1002/jhet.3059] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hany A. Eldeab
- Department of Pharmaceutical Chemistry, College of Pharmacy; Taif University; Taif Saudi Arabia
| | - Ahmad F. Eweas
- Department of Medicinal Chemistry, Pharmaceutical and Drug Industries Division; National Research Centre; Giza Egypt
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12
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Pleshkova NV, Nikolaenkova EB, Krivopalov VP, Mamatyuk VI. 2,6-Disubstituted 4-azidopyrimidines: synthesis, kinetic and thermodynamic studies of azide-tetrazole rearrangement by NMR spectroscopy. Russ Chem Bull 2017. [DOI: 10.1007/s11172-017-1986-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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14
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Affiliation(s)
- Curt Wentrup
- School of Chemistry and Molecular
Biosciences, The University of Queensland, Brisbane, Queensland 4072, Australia
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15
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Ostrovskii V, Popova E, Trifonov R. Developments in Tetrazole Chemistry (2009–16). ADVANCES IN HETEROCYCLIC CHEMISTRY 2017. [DOI: 10.1016/bs.aihch.2016.12.003] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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16
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17
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Li HM, Zu EP, Xu C. Crystal structure of 2-(4-methoxyphenyl)-2,3-dihydro-1 H-perimidine, C 18H 16N 2O. Z KRIST-NEW CRYST ST 2016. [DOI: 10.1515/ncrs-2015-0059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C18H16N2O, Monoclinic, P21/c, a = 12.1735(3) Å, b = 7.36483(18) Å, c = 16.1137(4) Å, β = 103.028(2)°, V = 1407.50(6) Å3, Z = 4, R
gt
(F) = 0.0387, wR
ref
(F
2
) = 0.1087, T = 291.15 K.
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Affiliation(s)
- Hong-Mei Li
- College of Life Science, Luoyang Normal University, Luoyang 471022, Henan Province, P. R. China
| | - En-Pu Zu
- College of Life Science, Luoyang Normal University, Luoyang 471022, Henan Province, P. R. China
| | - Chen Xu
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471022, Henan Province, P. R. China
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18
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Antypenko OM, Kovalenko SI, Karpenko OV. Synthesis and hydrolytic cleavage of tetrazolo[1,5-c]quinazolines. SYNTHETIC COMMUN 2016. [DOI: 10.1080/00397911.2016.1156131] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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19
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Aylward N, Winter HW, Eckhardt U, Wentrup C. Triazoloazine–Diazomethylazine Valence Isomerization. [1,2,3]Triazolo[1,5-a]pyridines and 2-Diazomethylpyridines. J Org Chem 2015; 81:667-72. [DOI: 10.1021/acs.joc.5b02639] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nigel Aylward
- School
of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Qld 4072, Australia
| | - Hans-Wilhelm Winter
- Fachbereich Chemie der Philipps-Universität Marburg, D-35037 Marburg, Germany
| | - Ulrich Eckhardt
- Fachbereich Chemie der Philipps-Universität Marburg, D-35037 Marburg, Germany
| | - Curt Wentrup
- School
of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Qld 4072, Australia
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20
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Theoretical study on the azido-cyclization of 3,6-diazido-1,2,4,5-tetrazine (DAT) with the dimethylsulfoxide (DMSO) solvent. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.06.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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21
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Karakus N, Demirel M. The trans–cis and the azide–tetrazole ring-chain isomerization of 2-azido-1,3-azoles: Quantum chemical study. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.03.041] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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22
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Chapyshev SV, Ushakov EN. Tandem deprotonation/azide-tetrazole tautomerization of 4,6-diazido-N-nitro-1,3,5-triazin-2-amine in dimethylsulfoxide solutions: a theoretical study. Phys Chem Chem Phys 2015; 17:17296-300. [PMID: 26073044 DOI: 10.1039/c5cp02096d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
4,6-Diazido-N-nitro-1,3,5-triazin-2-amine (2) is a new promising high-energy organic compound that isomerizes in dimethylsulfoxide (DMSO) solutions to form unknown products with interesting 13C and 15N NMR spectroscopic characteristics. To identify these products, the relative energies and the 13C and 15N chemical shifts were calculated for various prototropic and valence isomers of 2. It was found that this diazide in DMSO solutions exists in equilibrium with the deprotonated form of 5-azido-N-nitrotetrazolo[1,5-a][1,3,5]triazin-7-amine (8). The anion 8 is also observed in DMSO solutions of energetic salts derived from 2 and guanidines or 4H-1,2,4-triazol-4-amines. The tandem transformations of 2 in DMSO solutions found may be of interest from both theoretical and practical points of view, for instance, in the synthesis of new energetic materials, using the reactions of anion 8 with various electrophilic agents.
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Affiliation(s)
- S V Chapyshev
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, 142432 Chernogolovka, Moscow Region, Russian Federation.
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23
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Yang J, Gong X, Wang G. 1H/2H and azide/tetrazole isomerizations and their effects on the aromaticity and stability of azido triazoles. RSC Adv 2015. [DOI: 10.1039/c4ra14560g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
DFT studies on NAzTA, AAzTA, and AzTA show –NH2 facilitates but –NO2 impedes 1H/2H tautomerization. AZ/TZ isomerization of molecules with –N3 only is the easiest. 1H/2H tautomerization decreases while AZ/TZ isomerization increases the stability.
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Affiliation(s)
- Junqing Yang
- Department of Chemistry
- Nanjing University of Science and Technology
- Nanjing 210094
- China
| | - Xuedong Gong
- Department of Chemistry
- Nanjing University of Science and Technology
- Nanjing 210094
- China
| | - Guixiang Wang
- Department of Chemistry
- Nanjing University of Science and Technology
- Nanjing 210094
- China
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24
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Abarca B, Ballesteros R, Adam R, Ballesteros-Garrido R, Leroux FR, Colobert F, Alkorta I, Elguero J. A theoretical and experimental study of the racemization process of hexaaza[5]helicenes. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.09.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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25
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Blanco F, Lloyd DG, Alkorta I, Elguero J. Neutral alkaline-metal and alkaline-earth-metal derivatives of imidazole and benzimidazole. J Phys Chem A 2014; 118:4195-204. [PMID: 24844848 DOI: 10.1021/jp502443h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A theoretical study of the minima and connecting transition states of the neutral complexes formed by alkaline-metal and alkaline-earth-metal derivatives of imidazolate and benzimidazolate anions has been carried out using B3LYP/6-31+G(d,p), B3LYP/6-311+G(3df,2p), and G3B3 methods. Two and three nondegenerated minima and two and four TS structures have been identified for imidazole and benzimidazole derivatives, respectively. The most stable minima of the alkaline-metal derivatives of both systems correspond to the metal interacting with the imidazole ring, whereas in the alkaline-earth-metal derivatives, the preferred minima depend on the substituent. A remarkable feature of some minima is the fact that some of the metal-aromatic interactions follow the classical π-cation pattern, even though the global structure corresponds to a neutral salt, constituting a class of noncovalent interaction of great interest in the chemistry of aromatic and heterocyclic complexes. A CSD search has confirmed that the two bonding modes, N-σ and π, are present in the solid phase. The π mode has been analyzed by comparison with other azoles.
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Affiliation(s)
- Fernando Blanco
- Molecular Design Group, School of Biochemistry and Immunology, University of Dublin, Trinity College , Dublin 2, Ireland
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26
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Aggarwal R, Kumar V, Singh G, Sanz D, Claramunt RM, Alkorta I, Sánchez-Sanz G, Elguero J. An NMR and Computational Study of Azolo[a]pyrimidines with Special Emphasis on Pyrazolo[1,5-a]pyrimidines. J Heterocycl Chem 2014. [DOI: 10.1002/jhet.1955] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ranjana Aggarwal
- Department of Chemistry; Kurukshetra University; Kurukshetra 136 119 India
| | - Virender Kumar
- Department of Chemistry; Kurukshetra University; Kurukshetra 136 119 India
| | - Gulshan Singh
- Department of Chemistry; Kurukshetra University; Kurukshetra 136 119 India
| | - Dionisia Sanz
- Departamento de Química Orgánica y Bio-Orgánica; Facultad de Ciencias, UNED; Senda del Rey 9 E-28040 Madrid Spain
| | - Rosa M. Claramunt
- Departamento de Química Orgánica y Bio-Orgánica; Facultad de Ciencias, UNED; Senda del Rey 9 E-28040 Madrid Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC); Juan de la Cierva 3 E-28006 Madrid Spain
| | - Goar Sánchez-Sanz
- Instituto de Química Médica (CSIC); Juan de la Cierva 3 E-28006 Madrid Spain
| | - José Elguero
- Instituto de Química Médica (CSIC); Juan de la Cierva 3 E-28006 Madrid Spain
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27
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Thermal Rearrangements and Transformations of 1,2,3-Triazoles. TOPICS IN HETEROCYCLIC CHEMISTRY 2014. [DOI: 10.1007/7081_2014_131] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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28
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He P, Zhang JG, Wang K, Yin X, Zhang SW, Jiao JS. Calculations predict a novel desired compound containing eight catenated nitrogen atoms: 1-amino-tetrazolo-[4,5-b]tetrazole. RSC Adv 2014. [DOI: 10.1039/c4ra03515a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A novel 8-N conjoined energetic compound 1-amino-tetrazolo-[4,5-b]tetrazole has been designed and investigated at the DFT-B3LYP/6-311++G** level of theory.
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Affiliation(s)
- Piao He
- State Key Laboratory of Explosion Science and Technology
- Beijing Institute of Technology
- Beijing 100081, P. R. China
| | - Jian-Guo Zhang
- State Key Laboratory of Explosion Science and Technology
- Beijing Institute of Technology
- Beijing 100081, P. R. China
| | - Kun Wang
- State Key Laboratory of Explosion Science and Technology
- Beijing Institute of Technology
- Beijing 100081, P. R. China
| | - Xin Yin
- State Key Laboratory of Explosion Science and Technology
- Beijing Institute of Technology
- Beijing 100081, P. R. China
| | - Shao-Wen Zhang
- School of Chemistry
- Beijing Institute of Technology
- Beijing 100081, P. R. China
| | - Jian-She Jiao
- Research Institute of FA and ADA Equipment and Technology
- General Armament Department
- Beijing 100012, P. R. China
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29
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Resonance assisted hydrogen bonds in open-chain and cyclic structures of malonaldehyde enol: A theoretical study. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.04.069] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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30
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2-Azido-5-nitropyrimidine: Synthesis, Molecular Structure, and Reactions with N-, O-, and S-Nucleophiles. Chem Heterocycl Compd (N Y) 2013. [DOI: 10.1007/s10593-013-1308-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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31
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Synthesis and structural properties of hexaaza[5]helicene containing two [1,2,3]triazolo[1,5-a]pyridine moieties. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.06.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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JIMÉNEZ-PULIDO SONIAB, ILLÁN-CABEZA NURIAA, HUESO-UREÑA FRANCISCO, MORENO-CARRETERO MIGUELN. TAUTOMERISM IN NEUTRAL AND DEPROTONATED 6-AMINO-5-FORMYLURACILS: A PM3-COSMO APPROACH. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2013. [DOI: 10.1142/s0219633613500326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In order to identify the structure of the most stable tautomers of 6-amino-5-formyluracil and its N-methylated derivatives in different pH conditions, relative stabilities of potential tautomers in aqueous phase have been calculated taking into account the entropy effects over the tautomeric equilibria. In each medium, the tautomer with lower energy must be the most representative form at the corresponding pH and the knowledge of the effect of the medium in the tautomerization energies allows evaluating the possible effect of the medium over the molecular stability. The results show that, in aqueous phase, the order of basicity of protonation sites in the 6-amino-5-formyluracil derivatives is N 9 > ( N 3 > N 1) > ( O 8 > O 4 > O 2). The 6-amino-5-formyluracil derivatives act as an amino-formyl-keto tautomer with a strong imino character, although, upon successive deprotonations, a growing contribution of enolyzed forms which explain the increasing labilization of carbonyl bonds must be pointed out.
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Affiliation(s)
| | - NURIA A. ILLÁN-CABEZA
- Department of Inorganic and Organic Chemistry, University of Jaén, 23071-Jaén, Spain
| | - FRANCISCO HUESO-UREÑA
- Department of Inorganic and Organic Chemistry, University of Jaén, 23071-Jaén, Spain
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33
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Cornec AS, Baudequin C, Fiol-Petit C, Plé N, Dupas G, Ramondenc Y. One “Click” to Access Push-Triazole-Pull Fluorophores Incorporating a Pyrimidine Moiety: Structure-Photophysical Properties Relationships. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201033] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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34
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Abu-Eittah RH, El-Kelany KE. A theoretical DFT study on the structural parameters and azide-tetrazole equilibrium in substituted azidothiazole systems. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 99:316-328. [PMID: 23036938 DOI: 10.1016/j.saa.2012.08.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2012] [Revised: 08/01/2012] [Accepted: 08/08/2012] [Indexed: 06/01/2023]
Abstract
Azido-tetrazole equilibrium is sensitive to: substitution, solvent, temperature and phase. In this work, the effects of the type and position of substitution on the thiazole ring of azidothiazoles on its structural parameters and on the azido-tetrazole equilibrium have been theoretically investigated using the density functional procedures at the B3LYP/6-311G(∗∗) level of theory. This study includes the investigation of the equilibrium geometry, the transformation of the trans-conformer to the cis one then the ring closure to the tetrazole isomer. The transition states of the two steps were located, confirmed and the structural parameters were calculated. In all the steps of calculations, geometry optimization was considered. The results obtained indicate that substitution by: -NO(2) and -CN group shifts the equilibrium to the azide side and in some cases the tetrazole isomer is not obtained. On the other hand, substitution by: -NH(2) and -OH groups shifts the equilibrium to the tetrazole side and in some cases the azide isomer is not obtained and if formed changes spontaneously to the tetrazole isomer. The decisive parameters which determine the position of the equilibrium are: charge density on atoms N3 and N8, rearrangement of bond length and bond angles during the process of cyclization and variation of dipole moment as a result of cyclization. Results of this work indicate that substitution on C5 is more efficient than substitution on C4 of the thiazole ring.
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Affiliation(s)
- Rafie H Abu-Eittah
- Department of Chemistry, Faculty of Science, University of Cairo, Giza, Egypt.
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35
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Liu Y, Wang G, Gong X. 2,4-Diazido-5-iodo-pyrimidine crystal under high pressure: A comparison of DFT and DFT-D studies. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2012.09.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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36
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Azofra LM, Alkorta I, Elguero J, Popelier PL. Conformational study of the open-chain and furanose structures of d-erythrose and d-threose. Carbohydr Res 2012; 358:96-105. [DOI: 10.1016/j.carres.2012.06.011] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2012] [Revised: 06/18/2012] [Accepted: 06/19/2012] [Indexed: 10/28/2022]
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37
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Liu Y, Zhang L, Wang G, Wang L, Gong X. High-pressure studies on azido-tetrazole chain–ring conversion in crystalline 2-azido-4,6-dichloro-1,3,5-triazine. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1256-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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38
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Neue B, Fröhlich R, Wibbeling B, Fukazawa A, Wakamiya A, Yamaguchi S, Würthwein EU. Synthesis and Photophysical Properties of Aryl-Substituted 2-Borylbenzaldimines and Their Extended π-Conjugated Congeners. J Org Chem 2012; 77:2176-84. [DOI: 10.1021/jo202212s] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Benedikt Neue
- Westfälische Wilhelms-Universität, Corrensstraße 40,
48149 Münster, Germany
| | - Roland Fröhlich
- Westfälische Wilhelms-Universität, Corrensstraße 40,
48149 Münster, Germany
| | - Birgit Wibbeling
- Westfälische Wilhelms-Universität, Corrensstraße 40,
48149 Münster, Germany
| | - Aiko Fukazawa
- Department of Chemistry, Graduate School of Science, Nagoya University, Furo, Chikusa, Nagoya, 464-8602,
Japan
| | - Atsushi Wakamiya
- Institute for Chemical
Research, Kyoto University Uji, Gokasho,
Kyoto, 611-0011, Japan
| | - Shigehiro Yamaguchi
- Department of Chemistry, Graduate School of Science, Nagoya University, Furo, Chikusa, Nagoya, 464-8602,
Japan
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39
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Alkorta I, Popelier PLA. Computational study of mutarotation in erythrose and threose. Carbohydr Res 2011; 346:2933-9. [DOI: 10.1016/j.carres.2011.10.013] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2011] [Revised: 10/05/2011] [Accepted: 10/07/2011] [Indexed: 11/26/2022]
Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006-Madrid, Spain.
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40
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41
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Qi C, Zhang RB, Zhang XJ, Li YC, Wang Y, Pang SP. Theoretical Investigation of 4,4′,6,6′-Tetra(azido)azo-1,3,5-triazine-N-oxides and the Effects of N→O Bonding on Organic Azides. Chem Asian J 2011; 6:1456-62. [DOI: 10.1002/asia.201000897] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Indexed: 11/11/2022]
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42
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Theoretical investigations on the structure and relative stabilities of the tautomeric forms of 6-amino-5-nitrosouracil and violuric acid derivatives (PM3-COSMO calculation). COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.12.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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43
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Sola A, Orenes RA, García MÁ, Claramunt RM, Alkorta I, Elguero J, Tárraga A, Molina P. Unprecedented 1,3-Diaza[3]ferrocenophane Scaffold as Molecular Probe for Anions. Inorg Chem 2011; 50:4212-20. [DOI: 10.1021/ic102314r] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | | | - María Ángeles García
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias, UNED, Senda del Rey 9, E-28040 Madrid, Spain, and
| | - Rosa M. Claramunt
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias, UNED, Senda del Rey 9, E-28040 Madrid, Spain, and
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, E-28006 Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, E-28006 Madrid, Spain
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44
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Smellie IA, Fromm A, Moggach SA, Paton RM. Synthesis and structure of 2-pyransoylperimidines. Carbohydr Res 2011; 346:43-9. [DOI: 10.1016/j.carres.2010.09.028] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2010] [Revised: 09/17/2010] [Accepted: 09/23/2010] [Indexed: 11/26/2022]
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45
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Deev SL, Shenkarev ZO, Shestakova TS, Chupakhin ON, Rusinov VL, Arseniev AS. Selective 15N-Labeling and Analysis of 13C−15N J Couplings as an Effective Tool for Studying the Structure and Azide−Tetrazole Equilibrium in a Series of Tetrazolo[1,5-b][1,2,4]triazines and Tetrazolo[1,5-a]pyrimidines. J Org Chem 2010; 75:8487-97. [DOI: 10.1021/jo1017876] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sergey L. Deev
- Yeltsin Ural Federal University, 19 Mira Street, 620002 Ekaterinburg, Russia
| | - Zakhar O. Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
| | | | - Oleg N. Chupakhin
- Yeltsin Ural Federal University, 19 Mira Street, 620002 Ekaterinburg, Russia
- I. Ya. Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22 S. Kovalevskoy Street, 620219 Ekaterinburg, Russia
| | - Vladimir L. Rusinov
- Yeltsin Ural Federal University, 19 Mira Street, 620002 Ekaterinburg, Russia
| | - Alexander S. Arseniev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
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46
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The azido-tetrazole tautomerism in azoles and its relationships with aromaticity and NMR properties. Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.04.119] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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47
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Alkorta I, Elguero J. Conformational analysis of dibenzo[a,e]cyclooctadiene and three related heterocyclic compounds. Struct Chem 2010. [DOI: 10.1007/s11224-010-9625-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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