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Kubyshkin V, Rubini M. Proline Analogues. Chem Rev 2024; 124:8130-8232. [PMID: 38941181 DOI: 10.1021/acs.chemrev.4c00007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
Abstract
Within the canonical repertoire of the amino acid involved in protein biogenesis, proline plays a unique role as an amino acid presenting a modified backbone rather than a side-chain. Chemical structures that mimic proline but introduce changes into its specific molecular features are defined as proline analogues. This review article summarizes the existing chemical, physicochemical, and biochemical knowledge about this peculiar family of structures. We group proline analogues from the following compounds: substituted prolines, unsaturated and fused structures, ring size homologues, heterocyclic, e.g., pseudoproline, and bridged proline-resembling structures. We overview (1) the occurrence of proline analogues in nature and their chemical synthesis, (2) physicochemical properties including ring conformation and cis/trans amide isomerization, (3) use in commercial drugs such as nirmatrelvir recently approved against COVID-19, (4) peptide and protein synthesis involving proline analogues, (5) specific opportunities created in peptide engineering, and (6) cases of protein engineering with the analogues. The review aims to provide a summary to anyone interested in using proline analogues in systems ranging from specific biochemical setups to complex biological systems.
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Affiliation(s)
| | - Marina Rubini
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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Pétry N, Benakki H, Clot E, Retailleau P, Guenoun F, Asserar F, Sekkat C, Métro TX, Martinez J, Lamaty F. A mechanochemical approach to access the proline-proline diketopiperazine framework. Beilstein J Org Chem 2017; 13:2169-2178. [PMID: 29114324 PMCID: PMC5669228 DOI: 10.3762/bjoc.13.217] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Accepted: 09/21/2017] [Indexed: 12/15/2022] Open
Abstract
Ball milling was exploited to prepare a substituted proline building block by mechanochemical nucleophilic substitution. Subsequently, the mechanocoupling of hindered proline amino acid derivatives was developed to provide proline-proline dipeptides under solvent-free conditions. A deprotection-cyclization sequence yielded the corresponding diketopiperazines that were obtained with a high stereoselectivity which could be explained by DFT calculations. Using this method, an enantiopure disubstituted Pro-Pro diketopiperazine was synthesized in 4 steps, making 5 new bonds using a ball mill.
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Affiliation(s)
- Nicolas Pétry
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Hafid Benakki
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France.,Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Eric Clot
- Institut Charles Gerhardt, UMR 5253 CNRS-UM-ENSCM, Université de Montpellier, Place Eugène Bataillon, cc 1501, 34095 Montpellier Cedex 5, France
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - Farhate Guenoun
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Fatima Asserar
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Chakib Sekkat
- Laboratory of Chemistry Biology Applied to the Environment, Faculty of Sciences, Moulay Ismail University BP: 11201 Zitoune Meknès, Morocco
| | - Thomas-Xavier Métro
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Jean Martinez
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Frédéric Lamaty
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM, Campus Triolet, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
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Liu W, Hu Y, Zhang Y, Ma Y, Huang H. Enzymatic desymmetrization of 3-(4-fluorophenyl)glutaric anhydride through enantioselective alcoholysis in organic solvents. BIOTECHNOL BIOPROC E 2014. [DOI: 10.1007/s12257-014-0110-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Chen P, Gao M, Wang DX, Zhao L, Wang MX. Enantioselective Biotransformations of Racemic and Meso Pyrrolidine-2,5-dicarboxamides and Their Application in Organic Synthesis. J Org Chem 2012; 77:4063-72. [DOI: 10.1021/jo300412j] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Peng Chen
- Beijing National Laboratory for Molecular
Sciences, CAS Key Laboratory of Molecular Recognition and Function,
Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Ming Gao
- Beijing National Laboratory for Molecular
Sciences, CAS Key Laboratory of Molecular Recognition and Function,
Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - De-Xian Wang
- Beijing National Laboratory for Molecular
Sciences, CAS Key Laboratory of Molecular Recognition and Function,
Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Liang Zhao
- MOST Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Mei-Xiang Wang
- MOST Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
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García-Urdiales E, Alfonso I, Gotor V. Update 1 of: Enantioselective Enzymatic Desymmetrizations in Organic Synthesis. Chem Rev 2011; 111:PR110-80. [DOI: 10.1021/cr100330u] [Citation(s) in RCA: 130] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Eduardo García-Urdiales
- Departamento de Química
Orgánica e Inorgánica, Facultad de Química, Universidad
de Oviedo, Julián Clavería, 8, 33006 Oviedo, Spain,
and
| | - Ignacio Alfonso
- Departamento de Química Biológica
y Modelización Molecular, Instituto de Química Avanzada
de Cataluña (IQAC, CSIC), Jordi Girona, 18-26, 08034, Barcelona,
Spain
| | - Vicente Gotor
- Departamento de Química
Orgánica e Inorgánica, Facultad de Química, Universidad
de Oviedo, Julián Clavería, 8, 33006 Oviedo, Spain,
and
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Journot G, Letondor C, Neier R, Stoeckli-Evans H, Savoia D, Gualandi A. Catalytic Hydrogenation ofmeso-Octamethylporphyrinogen (Calix[4]pyrrole). Chemistry 2010; 16:4224-30. [DOI: 10.1002/chem.200903464] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Stocker BL, Dangerfield EM, Win‐Mason AL, Haslett GW, Timmer MSM. Recent Developments in the Synthesis of Pyrrolidine‐Containing Iminosugars. European J Org Chem 2010. [DOI: 10.1002/ejoc.200901320] [Citation(s) in RCA: 153] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Bridget L. Stocker
- Malaghan Institute of Medical Research, P. O. Box 7060, Wellington, New Zealand
| | - Emma M. Dangerfield
- Malaghan Institute of Medical Research, P. O. Box 7060, Wellington, New Zealand
- School of Chemical and Physical Sciences, Victoria University of Wellington, P. O. Box 600, Wellington, New Zealand, Fax: +64‐4‐463‐5241
| | - Anna L. Win‐Mason
- Malaghan Institute of Medical Research, P. O. Box 7060, Wellington, New Zealand
- School of Chemical and Physical Sciences, Victoria University of Wellington, P. O. Box 600, Wellington, New Zealand, Fax: +64‐4‐463‐5241
| | - Gregory W. Haslett
- Malaghan Institute of Medical Research, P. O. Box 7060, Wellington, New Zealand
- School of Chemical and Physical Sciences, Victoria University of Wellington, P. O. Box 600, Wellington, New Zealand, Fax: +64‐4‐463‐5241
| | - Mattie S. M. Timmer
- School of Chemical and Physical Sciences, Victoria University of Wellington, P. O. Box 600, Wellington, New Zealand, Fax: +64‐4‐463‐5241
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Atta AK, Pathak T. A General and Diastereoselective Route to Five-Membered Carbocycles and Heterocycles from Acyclic Vinyl Sulfone-Modified Carbohydrates. European J Org Chem 2010. [DOI: 10.1002/ejoc.200900957] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Affolter O, Baro A, Frey W, Laschat S. Alkaloids from alkaloids: total synthesis of (±)-7a-epi-hyacinthacine A1 from Z-protected tropenone via Baeyer–Villiger oxidation. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.05.071] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Chênevert R, Morin P. Synthesis of (-)-lobeline via enzymatic desymmetrization of lobelanidine. Bioorg Med Chem 2009; 17:1837-9. [PMID: 19217305 DOI: 10.1016/j.bmc.2009.01.055] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2008] [Revised: 01/20/2009] [Accepted: 01/24/2009] [Indexed: 11/30/2022]
Abstract
The bioactive alkaloid (-)-lobeline was synthesized via the stereoselective acylation (desymmetrization) of meso-lobelanidine by vinyl acetate in the presence of Candida antarctica lipase B.
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Affiliation(s)
- Robert Chênevert
- Département de Chimie, PROTEO, Faculté des Sciences et de Génie, Université Laval, Québec, Canada.
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Chênevert R, Lévesque C, Morin P. Chemoenzymatic Synthesis of Both Enantiomers of 3-Hydroxy-2,2-dimethylcyclohexanone. J Org Chem 2008; 73:9501-3. [DOI: 10.1021/jo801954v] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Robert Chênevert
- Département de Chimie, CREFSIP, Faculté des Sciences et de Génie, Université Laval, Québec (QC), Canada G1K 7P4
| | - Carine Lévesque
- Département de Chimie, CREFSIP, Faculté des Sciences et de Génie, Université Laval, Québec (QC), Canada G1K 7P4
| | - Pierre Morin
- Département de Chimie, CREFSIP, Faculté des Sciences et de Génie, Université Laval, Québec (QC), Canada G1K 7P4
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