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Dhara D, Dhara A, Murphy PV, Mulard LA. Protecting group principles suited to late stage functionalization and global deprotection in oligosaccharide synthesis. Carbohydr Res 2022; 521:108644. [PMID: 36030632 DOI: 10.1016/j.carres.2022.108644] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 07/28/2022] [Accepted: 07/31/2022] [Indexed: 11/02/2022]
Abstract
Chemical synthesis is a powerful tool to access homogeneous complex glycans, which relies on protecting group (PG) chemistry. However, the overall efficiency of chemical glycan assembly is still low when compared to oligonucleotide or oligopeptide synthesis. There have been many contributions giving rise to collective improvement in carbohydrate synthesis that includes PG manipulation and stereoselective glycoside formation and some of this chemistry has been transferred to the solid phase or adapted for programmable one pot synthesis approaches. However, after all glycoside bond formation reactions are completed, the global deprotection (GD) required to give the desired target OS can be challenging. Difficulties observed in the removal of permanent PGs to release the desired glycans can be due to the number and diversity of PGs present in the protected OSs, nature and structural complexity of glycans, etc. Here, we have reviewed the difficulties associated with the removal of PGs from densely protected OSs to obtain their free glycans. In particularly, this review focuses on the challenges associated with hydrogenolysis of benzyl groups, saponification of esters and functional group interconversion such as oxidation/reduction that are commonly performed in GD stage. More generally, problems observed in the removal of permanent PGs is reviewed herein, including benzyl, acyl (levulinoyl, acetyl), N-trichloroacetyl, N-2,2,2-trichloroethoxycarbonyl, N-phthaloyl etc. from a number of fully protected OSs to release the free sugar, that have been previously reported in the literature.
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Affiliation(s)
- Debashis Dhara
- Institut Pasteur, Université Paris Cité, CNRS UMR 3523, Unité de Chimie des Biomolécules, 25-28 rue du Dr Roux, 75015, Paris, France; School of Biological and Chemical Sciences, NUI Galway, University Road, Galway, H91 TK33, Ireland.
| | - Ashis Dhara
- School of Biological and Chemical Sciences, NUI Galway, University Road, Galway, H91 TK33, Ireland
| | - Paul V Murphy
- School of Biological and Chemical Sciences, NUI Galway, University Road, Galway, H91 TK33, Ireland; SSPC - The Science Foundation Ireland Research Centre for Pharmaceuticals, NUI Galway, University Road, Galway, H91 TK33, Ireland
| | - Laurence A Mulard
- Institut Pasteur, Université Paris Cité, CNRS UMR 3523, Unité de Chimie des Biomolécules, 25-28 rue du Dr Roux, 75015, Paris, France
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2
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Lihl C, Renpenning J, Kümmel S, Gelman F, Schürner HKV, Daubmeier M, Heckel B, Melsbach A, Bernstein A, Shouakar-Stash O, Gehre M, Elsner M. Toward Improved Accuracy in Chlorine Isotope Analysis: Synthesis Routes for In-House Standards and Characterization via Complementary Mass Spectrometry Methods. Anal Chem 2019; 91:12290-12297. [DOI: 10.1021/acs.analchem.9b02463] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Christina Lihl
- Institute of Groundwater Ecology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Julian Renpenning
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research − UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - Steffen Kümmel
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research − UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - Faina Gelman
- Geological Survey of Israel, 32 Yeshayahu Leibowitz Street, 9692100 Jerusalem, Israel
| | - Heide K. V. Schürner
- Institute of Groundwater Ecology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Martina Daubmeier
- Institute of Groundwater Ecology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Benjamin Heckel
- Chair of Analytical Chemistry and Water Chemistry, Technical University of Munich, Marchioninistraße 17, 81377 München, Germany
| | - Aileen Melsbach
- Institute of Groundwater Ecology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Anat Bernstein
- Zuckerberg Institute for Water Research, Department of Environmental Hydrology and Microbiology, Ben-Gurion University of the Negev, 84990 Sede Boqer, Israel
| | - Orfan Shouakar-Stash
- Department of Earth Sciences, University of Waterloo, 200 University Avenue, Waterloo, Ontario, Canada N2L 3G1
| | - Matthias Gehre
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research − UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - Martin Elsner
- Institute of Groundwater Ecology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
- Chair of Analytical Chemistry and Water Chemistry, Technical University of Munich, Marchioninistraße 17, 81377 München, Germany
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Vellemäe E, Lebedev O, Sillard R, Mäeorg U. A selective method for cleavage of N-Troc-protected hydrazines and amines under mild conditions using mischmetal and TMSCl. JOURNAL OF CHEMICAL RESEARCH 2019. [DOI: 10.3184/030823406779173280] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The Troc (2,2,2-trichloroethoxycarbonyl) protecting group was efficiently removed under neutral conditions from corresponding protected hydrazines and amines using mischmetal in good to excellent yields. Two new substituted hydrazines were synthesised.
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Affiliation(s)
- Eerold Vellemäe
- Institute of Organic and Bioorganic Chemistry, University of Tartu, Jakobi 2, 51014, Tartu, Estonia
| | - Oleg Lebedev
- Institute of Organic and Bioorganic Chemistry, University of Tartu, Jakobi 2, 51014, Tartu, Estonia
| | - Rannar Sillard
- Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 171-77 Stockholm, Sweden
| | - Uno Mäeorg
- Institute of Organic and Bioorganic Chemistry, University of Tartu, Jakobi 2, 51014, Tartu, Estonia
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4
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Trost BM, Kalnmals CA, Tracy JS, Bai WJ. Highly Chemoselective Deprotection of the 2,2,2-Trichloroethoxycarbonyl (Troc) Protecting Group. Org Lett 2018; 20:8043-8046. [DOI: 10.1021/acs.orglett.8b03642] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Barry M. Trost
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | | | - Jacob S. Tracy
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Wen-Ju Bai
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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5
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A novel O -fucosylation strategy preactivated by ( p -Tol) 2 SO/Tf 2 O and its application for the synthesis of Lewis blood group antigen Lewis a. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.04.056] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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6
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Pertel SS, Kononov LO, Zinin AI, Chirva VJ, Kakayan ES. Synthesis of some 2-alkoxy glyco-[2,1-d]-2-oxazolines and evaluation of their glycosylation reactivity. Carbohydr Res 2012; 356:172-9. [DOI: 10.1016/j.carres.2012.03.026] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Revised: 03/21/2012] [Accepted: 03/23/2012] [Indexed: 10/28/2022]
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7
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Enugala R, Carvalho LCR, Dias Pires MJ, Marques MMB. Stereoselective Glycosylation of Glucosamine: The Role of the
N
‐Protecting Group. Chem Asian J 2012; 7:2482-501. [DOI: 10.1002/asia.201200338] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Indexed: 12/17/2022]
Affiliation(s)
- Ramu Enugala
- Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus de Caparica 2829‐516 Caparica (Portugal), Fax: (+351) 21‐294‐8550
| | - Luísa C. R. Carvalho
- Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus de Caparica 2829‐516 Caparica (Portugal), Fax: (+351) 21‐294‐8550
| | - Marina J. Dias Pires
- Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus de Caparica 2829‐516 Caparica (Portugal), Fax: (+351) 21‐294‐8550
| | - M. Manuel B. Marques
- Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus de Caparica 2829‐516 Caparica (Portugal), Fax: (+351) 21‐294‐8550
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8
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Zhang J, Fu J, Si W, Wang X, Wang Z, Tang J. A highly efficient deprotection of the 2,2,2-trichloroethyl group at the anomeric oxygen of carbohydrates. Carbohydr Res 2011; 346:2290-3. [PMID: 21889124 DOI: 10.1016/j.carres.2011.08.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2011] [Revised: 08/05/2011] [Accepted: 08/06/2011] [Indexed: 10/17/2022]
Abstract
Commercially available zinc dust in the presence of ammonium chloride in acetonitrile at reflux removes the 2,2,2-trichloroethyl (TCE) group at anomeric centers with excellent yields (>95%) in short reaction times. This present method is easily implemented on substrates containing acyl and benzyl groups and large-scale reactions also proceed in high yield.
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Affiliation(s)
- Jianbo Zhang
- Department of Chemistry, East China Normal University, Shanghai 200062, China.
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Kim MR, Maheswara M, Do JY. Novel Synthesis of Hydrophilic Dipolar Chromophores using Dendronized Sulfonates. B KOREAN CHEM SOC 2011. [DOI: 10.5012/bkcs.2011.32.2.664] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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10
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John Pal AP, Kadigachalam P, Mallick A, Doddi VR, Vankar YD. Synthesis of sugar-derived spiroaminals via lactamization and metathesis reactions. Org Biomol Chem 2011; 9:809-19. [DOI: 10.1039/c0ob00555j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Vellemäe E, Stepanov V, Mäeorg U. Mild Approach to the Deprotection of Troc from Protected Amines Using Mischmetal and TMSCl. SYNTHETIC COMMUN 2010. [DOI: 10.1080/00397910903419910] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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12
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Huang CY, Wang N, Fujiki K, Otsuka Y, Akamatsu M, Fujimoto Y, Fukase K. Widely Applicable Deprotection Method of 2,2,2-Trichloroethoxycarbonyl (Troc) Group Using Tetrabutylammonium Fluoride. J Carbohydr Chem 2010. [DOI: 10.1080/07328303.2010.512405] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Cheng-yuan Huang
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Ning Wang
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Katsumasa Fujiki
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Yuji Otsuka
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Masao Akamatsu
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Yukari Fujimoto
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
| | - Koichi Fukase
- a Department of Chemistry, Graduate School of Science , Osaka University , Toyonaka, Osaka, 560-0043, Japan
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John Pal A, Vankar YD. Azidation of anomeric nitro sugars: application in the synthesis of spiroaminals as glycosidase inhibitors. Tetrahedron Lett 2010. [DOI: 10.1016/j.tetlet.2010.03.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Bongat AFG, Demchenko AV. Recent trends in the synthesis of O-glycosides of 2-amino-2-deoxysugars. Carbohydr Res 2007; 342:374-406. [PMID: 17125757 DOI: 10.1016/j.carres.2006.10.021] [Citation(s) in RCA: 171] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2006] [Revised: 10/13/2006] [Accepted: 10/20/2006] [Indexed: 11/23/2022]
Abstract
The discovery of new methods for stereoselective glycoside synthesis and convergent oligosaccharide assembly has been critical for the area of glycosciences. At the heart of this account is the discussion of the approaches for stereoselective synthesis of glycosides of 2-amino-2-deoxysugars that have emerged during the past two decades. The introductory part provides general background information and describes the key features and challenges for the synthesis of this class of compounds. Subsequently, major approaches to the synthesis of 2-amino-2-deoxyglycosides are categorized and discussed. Each subsection elaborates on the introduction (or protection) of the amino functionality, synthesis of glycosyl donors by introduction of a suitable leaving group, and glycosidation. Wherever applicable, the deprotection of a temporary amino group substituent and the conversion onto the natural acetamido functionality is described. The conclusions part evaluates the current standing in the field and provides a perspective for future developments.
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Affiliation(s)
- Aileen F G Bongat
- Department of Chemistry and Biochemistry, University of Missouri--St. Louis, One University Blvd., St. Louis, MO 63121, USA
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15
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Tokimoto H, Fukase K. New deprotection method of the 2,2,2-trichloroethoxycarbonyl (Troc) group with (Bu3Sn)2. Tetrahedron Lett 2005. [DOI: 10.1016/j.tetlet.2005.08.026] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Czifrák K, Szilágyi P, Somsák L. Anomeric α-azido acid (2-azido-2-deoxy-hept-2-ulopyranosonic acid) derivatives en route to peptides incorporating sugar amino acids. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.tetasy.2004.11.064] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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