1
|
Abstract
Traceless solid-phase synthesis represents an ultimate sophisticated synthetic strategy on insoluble supports. Compounds synthesized on solid supports can be released without a trace of the linker that was used to tether the intermediates during the synthesis. Thus, the target products are composed only of the components (atoms, functional groups) inherent to the target core structure. A wide variety of synthetic strategies have been developed to prepare products in a traceless manner, and this review is dedicated to all aspects of traceless solid-phase organic synthesis. Importantly, the synthesis does not need to be carried out on a linker designed for traceless synthesis; most of the synthetic approaches described herein were developed using standard, commercially available linkers (originally devised for solid-phase peptide synthesis). The type of structure prepared in a traceless fashion is not restricted. The individual synthetic approaches are divided into eight sections, each devoted to a different methodology for traceless synthesis. Each section consists of a brief outline of the synthetic strategy followed by a description of individual reported syntheses.
Collapse
Affiliation(s)
- Naděžda Cankařová
- Department of Organic Chemistry, Faculty of Science , Palacky University , 17. Listopadu 12 , Olomouc , 771 46 , Czech Republic
| | - Eva Schütznerová
- Department of Organic Chemistry, Faculty of Science , Palacky University , 17. Listopadu 12 , Olomouc , 771 46 , Czech Republic
| | - Viktor Krchňák
- Department of Organic Chemistry, Faculty of Science , Palacky University , 17. Listopadu 12 , Olomouc , 771 46 , Czech Republic.,Department of Chemistry and Biochemistry , University of Notre Dame , 251 Nieuwland Science Center , Notre Dame , Indiana 46556 , United States
| |
Collapse
|
2
|
Šmit BM, Pavlović RZ, Milenković DA, Marković ZS. Mechanism, kinetics and selectivity of selenocyclization of 5-alkenylhydantoins: an experimental and computational study. Beilstein J Org Chem 2015; 11:1865-75. [PMID: 26664604 PMCID: PMC4661018 DOI: 10.3762/bjoc.11.200] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2015] [Accepted: 09/12/2015] [Indexed: 12/29/2022] Open
Abstract
The mechanism and selectivity of a bicyclic hydantoin formation by selenium-induced cyclization are investigated. The proposed mechanism involves the intermediates formed by an electrophilic addition of the selenium reagent on a double bond of the starting 5-alkenylhydantoin prior the cyclization. These intermediates are readily converted into the more stable cyclic seleniranium cations. A key step of the mechanism is an intramolecular cyclization which is realized through an anti-attack of the internal nucleophile, the amidic nitrogen, to the seleniranium cation yielding the intermediate imidazolinium cations. Their deprotonation is followed by the formation of the fused bicyclic reaction products. Important intermediates and key transition states are studied by using density functional theory (DFT) methods. The pathways of the reaction are investigated in detail. There are two regioselective pathways related to 5-exo and 6-endo products. Theoretical calculations and the monitoring of the cyclization reaction using (1)H NMR spectroscopy are in a good agreement with the proposed mechanism and are consistent with our experimental results. The preferred pathway for formation of 5-exo products is confirmed.
Collapse
Affiliation(s)
- Biljana M Šmit
- Faculty of Science, University of Kragujevac, Radoja Domanovića 12 P.O. Box 60, 34000 Kragujevac, Serbia
| | - Radoslav Z Pavlović
- Faculty of Science, University of Kragujevac, Radoja Domanovića 12 P.O. Box 60, 34000 Kragujevac, Serbia
| | - Dejan A Milenković
- Bioengineering Research and Development Center, 34000 Kragujevac, Serbia
| | - Zoran S Marković
- Bioengineering Research and Development Center, 34000 Kragujevac, Serbia
- Department of Chemical-Technological Sciences, State University of Novi Pazar, Vuka Karadžića bb, 36300 Novi Pazar, Serbia
| |
Collapse
|
3
|
Šmit BM, Pavlović RZ. Three-step synthetic pathway to fused bicyclic hydantoins involving a selenocyclization step. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.12.088] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
4
|
Khodaee Z, Yahyazadeh A, Mahmoodi NO. One-Pot Synthesis and Characterization of Some New Types of 5,5′-Disubstituted Bis(imidazolidine-2,4-diones). J Heterocycl Chem 2013. [DOI: 10.1002/jhet.1034] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Ziba Khodaee
- Department of Organic Chemistry; University of Guilan; P. O. Box 1914; Rasht; Iran
| | - Asieh Yahyazadeh
- Department of Organic Chemistry; University of Guilan; P. O. Box 1914; Rasht; Iran
| | - Nosrat O. Mahmoodi
- Department of Organic Chemistry; University of Guilan; P. O. Box 1914; Rasht; Iran
| |
Collapse
|
5
|
Zajdel P, Masurier N, Canale V, Verdie P, Amblard M, Pawłowski M, Martinez J, Subra G. The pipecolic linker—an acid-labile handle for derivatization of secondary amines on a solid-support. Part 3. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2012.12.036] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
6
|
Dhara K, Midya GC, Dash J. A Diversity-Oriented Approach to Spirocyclic and Fused Hydantoins via Olefin Metathesis. J Org Chem 2012; 77:8071-82. [DOI: 10.1021/jo301234r] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Kalyan Dhara
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West
Bengal 741252, India
| | - Ganesh Chandra Midya
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West
Bengal 741252, India
- Department
of Organic Chemistry, Indian Association for the Cultivation of Science,
Jadavpur, Kolkata-700032, India
| | - Jyotirmayee Dash
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West
Bengal 741252, India
- Department
of Organic Chemistry, Indian Association for the Cultivation of Science,
Jadavpur, Kolkata-700032, India
| |
Collapse
|
7
|
Gerona-Navarro G, González-Muñiz R, Fernández-Carvajal A, González-Ros JM, Ferrer-Montiel A, Carreño C, Albericio F, Royo M. Solid-phase synthesis of a library of amphipatic hydantoins. Discovery of new hits for TRPV1 blockade. ACS COMBINATORIAL SCIENCE 2011; 13:458-65. [PMID: 21671576 PMCID: PMC3296451 DOI: 10.1021/co1000986] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Some heterocyclic systems, called privileged scaffolds, appear frequently in bioactive products and marketed drugs. The combination of a recognized privileged scaffold (hydantoin) and a functional group with high incidence in bioactive molecules (guanidine) guided the design of a library of amphipatic compounds, which allowed the discovery of novel TRPV1 ion channel blockers. The library was synthesized by parallel solid-phase synthesis from an orthogonally protected resin-bound Lys-Lys skeleton. Key steps of the synthetic procedure were the construction of the hydantoin ring, by reaction of the N-terminal amino group with N,N-disuccinimidyl carbonate (DSC) and subsequent base-induced cyclization, and the guanidinylation of the C-terminal Lys side-chain after removal of the Alloc protecting-group. The preliminary biological studies have allowed the identification of some of the key structural features directing the blockage of capsaicin-induced Ca(2+) influx through TRPV1 channels, particularly, the strong preference showed for highly lipophilic acyl groups and substituted guanidine moieties. Active compounds based on this new pharmacophoric scaffold that display in vitro and in vivo inhibitory activity.
Collapse
Affiliation(s)
| | | | - Asia Fernández-Carvajal
- Instituto de Biología Molecular y Celular, Universidad Miguel Hernández, Av. de la Universidad, 03202 Elche, Spain
| | - José M. González-Ros
- Instituto de Biología Molecular y Celular, Universidad Miguel Hernández, Av. de la Universidad, 03202 Elche, Spain
| | - Antonio Ferrer-Montiel
- Instituto de Biología Molecular y Celular, Universidad Miguel Hernández, Av. de la Universidad, 03202 Elche, Spain
- DiverDrugs SL. Isaac Peral 17 (Pol. Ind. Camí Ral), 08850 Gavà, Spain
| | - Cristina Carreño
- DiverDrugs SL. Isaac Peral 17 (Pol. Ind. Camí Ral), 08850 Gavà, Spain
| | - Fernando Albericio
- Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10, 08028 Barcelona, Spain
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials, and Nanomedicine, Barcelona Science Park, University of Barcelona, Baldiri Reixac 10, 08028 Barcelona, Spain
- Department of Organic Chemistry, University of Barcelona, Martí i Franqués 1-11, 08028 Barcelona, Spain
| | - Miriam Royo
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials, and Nanomedicine, Barcelona Science Park, University of Barcelona, Baldiri Reixac 10, 08028 Barcelona, Spain
- Combinatorial Chemistry Unit, Barcelona Science Park, University of Barcelona, Baldiri Reixac 10, 08028 Barcelona, Spain
| |
Collapse
|
8
|
Babaev EV. Solid-phase synthesis for beginners: Choice of tools and techniques for implementation of multistage transformations. RUSS J GEN CHEM+ 2011. [DOI: 10.1134/s1070363210120261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
9
|
Scott WL, Audu CO, Dage JL, Goodwin LA, Martynow JG, Platt LK, Smith JG, Strong AT, Wickizer K, Woerly EM, O'Donnell MJ. Distributed Drug Discovery, Part 3: using D(3) methodology to synthesize analogs of an anti-melanoma compound. ACTA ACUST UNITED AC 2009; 11:34-43. [PMID: 19105723 PMCID: PMC2651688 DOI: 10.1021/cc800185z] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
For the successful implementation of Distributed Drug Discovery (D(3)) (outlined in the accompanying Perspective), students, in the course of their educational laboratories, must be able to reproducibly make new, high quality, molecules with potential for biological activity. This article reports the successful achievement of this goal. Using previously rehearsed alkylating agents, students in a second semester organic chemistry laboratory performed a solid-phase combinatorial chemistry experiment in which they made 38 new analogs of the most potent member of a class of antimelanoma compounds. All compounds were made in duplicate, purified by silica gel chromatography, and characterized by NMR and LC/MS. As a continuing part of the Distributed Drug Discovery program, a virtual D(3) catalog based on this work was then enumerated and is made freely available to the global scientific community.
Collapse
Affiliation(s)
- William L Scott
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana 46202-3274, USA.
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
10
|
Scott WL, Alsina J, Audu CO, Babaev E, Cook L, Dage JL, Goodwin LA, Martynow JG, Matosiuk D, Royo M, Smith JG, Strong AT, Wickizer K, Woerly EM, Zhou Z, O'Donnell MJ. Distributed Drug Discovery, Part 2: global rehearsal of alkylating agents for the synthesis of resin-bound unnatural amino acids and virtual D(3) catalog construction. ACTA ACUST UNITED AC 2009; 11:14-33. [PMID: 19105725 PMCID: PMC2651687 DOI: 10.1021/cc800184v] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
![]()
Distributed Drug Discovery (D3) proposes solving large drug discovery problems by breaking them into smaller units for processing at multiple sites. A key component of the synthetic and computational stages of D3 is the global rehearsal of prospective reagents and their subsequent use in the creation of virtual catalogs of molecules accessible by simple, inexpensive combinatorial chemistry. The first section of this article documents the feasibility of the synthetic component of Distributed Drug Discovery. Twenty-four alkylating agents were rehearsed in the United States, Poland, Russia, and Spain, for their utility in the synthesis of resin-bound unnatural amino acids 1, key intermediates in many combinatorial chemistry procedures. This global reagent rehearsal, coupled to virtual library generation, increases the likelihood that any member of that virtual library can be made. It facilitates the realistic integration of worldwide virtual D3 catalog computational analysis with synthesis. The second part of this article describes the creation of the first virtual D3 catalog. It reports the enumeration of 24 416 acylated unnatural amino acids 5, assembled from lists of either rehearsed or well-precedented alkylating and acylating reagents, and describes how the resulting catalog can be freely accessed, searched, and downloaded by the scientific community.
Collapse
Affiliation(s)
- William L Scott
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University, Indianapolis, Indiana 46202-3274, USA.
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
11
|
Scott WL, O'Donnell MJ. Distributed Drug Discovery, Part 1: linking academia and combinatorial chemistry to find drug leads for developing world diseases. JOURNAL OF COMBINATORIAL CHEMISTRY 2009; 11:3-13. [PMID: 19105724 PMCID: PMC2651689 DOI: 10.1021/cc800183m] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2008] [Indexed: 02/08/2023]
Affiliation(s)
- William L Scott
- Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana 46202-3274, USA.
| | | |
Collapse
|
12
|
Abstract
Peptidomimetic modifications or cyclization of linear peptides are frequently used as attractive methods to provide more conformationally constrained and thus more stable and bioactive peptides. Among numerous peptidomimetic approaches described recently in the literature, particularly attractive are pseudopeptides or peptide bond surrogates in which peptide bonds have been replaced with other chemical groups. In these peptidomimetics the amide bond surrogates possess three-dimensional structures similar to those of natural peptides, yet with significant differences in polarity, hydrogen bonding capability, and acid-base character. The introduction of such modifications to the peptide sequence is expected to completely prevent protease cleavage of amide bond and significantly improve peptides' metabolic stability. In this chapter we consider Fmoc solid-phase synthesis of peptide analogs containing the amide surrogate that tend to be isosteric with the natural amide. This includes synthesis of peptidosulfonamides, phosphonopeptides, oligoureas, depsides, depsipeptides, and peptoids.
Collapse
Affiliation(s)
- Predrag Cudic
- Department of Chemistry and Biochemistry Florida, Atlantic University, Boca Raton, FL, USA
| | | |
Collapse
|
13
|
Claeys DD, Stevens CV, Dieltiens N. The Formation oftrans-Fused Macrocycles fromN3,N3′-Polymethylenebis(hydantoins) by Ring-Closing Metathesis. European J Org Chem 2008. [DOI: 10.1002/ejoc.200700836] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
14
|
Dolle RE, Le Bourdonnec B, Morales GA, Moriarty KJ, Salvino JM. Comprehensive survey of combinatorial library synthesis: 2005. ACTA ACUST UNITED AC 2006; 8:597-635. [PMID: 16961395 DOI: 10.1021/cc060095m] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Roland E Dolle
- Adolor Corporation, 700 Pennsylvania Drive, Exton, Pennsylvania 19341, USA.
| | | | | | | | | |
Collapse
|
15
|
Zhang X, Allan GF, Sbriscia T, Linton O, Lundeen SG, Sui Z. Synthesis and SAR of novel hydantoin derivatives as selective androgen receptor modulators. Bioorg Med Chem Lett 2006; 16:5763-6. [PMID: 16959487 DOI: 10.1016/j.bmcl.2006.08.084] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2006] [Revised: 08/18/2006] [Accepted: 08/18/2006] [Indexed: 12/01/2022]
Abstract
A novel series of hydantoin derivatives were identified by in vivo studies as tissue selective androgen receptor modulators. SAR around this series revealed that the function of the ligand could be altered by minor structural modification.
Collapse
Affiliation(s)
- Xuqing Zhang
- Drug Discovery, Johnson & Johnson Pharmaceutical Research and Development, LLC, 665 Stockton Drive, Exton, PA 19341, USA.
| | | | | | | | | | | |
Collapse
|
16
|
Ambrożak A, Güutschow M. Transformation of a spirobarbituric acidviaaminobarbituric acid-hydantoin rearrangement. J Heterocycl Chem 2006. [DOI: 10.1002/jhet.5570430346] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|