1
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Eleuteri M, Desantis J, Cruciani G, Germani R, Goracci L. Use of ionic liquids in amidation reactions for proteolysis targeting chimera synthesis. Org Biomol Chem 2024; 22:3477-3489. [PMID: 38602033 DOI: 10.1039/d4ob00304g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
Abstract
Selective degradation of disease-causing proteins using proteolysis targeting chimeras (PROTACs) has gained great attention, thanks to its several advantages over traditional therapeutic modalities. Despite the advances made so far, the structural chemical complexity of PROTACs poses challenges in their synthetic approaches. PROTACs are typically prepared through a convergent approach, first synthesizing two fragments separately (target protein and E3 ligase ligands) and then coupling them to produce a fully assembled PROTAC. The amidation reaction represents the most common coupling exploited in PROTACs synthesis. Unfortunately, the overall isolated yields of such synthetic procedures are usually low due to one or more purification steps to obtain the final PROTAC with acceptable purity. In this work, we focused our attention on the optimization of the final amidation step for the synthesis of an anti-SARS-CoV-2 PROTAC by investigating different amidation coupling reagents and a range of alternative solvents, including ionic liquids (ILs). Among the ILs screened, [OMIM][ClO4] emerged as a successful replacement for the commonly used DMF within the HATU-mediated amidation reaction, thus allowing the synthesis of the target PROTAC under mild and sustainable conditions in very high isolated yields. With the optimised conditions in hand, we explored the scalability of the synthetic approach and the substrate scope of the reaction by employing different E3 ligase ligand (VHL and CRBN)-based intermediates containing linkers of different lengths and compositions or by using different target protein ligands. Interestingly, in all cases, we obtained high isolated yields and complete conversion in short reaction times.
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Affiliation(s)
- Michela Eleuteri
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, Italy.
| | - Jenny Desantis
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, Italy.
| | - Gabriele Cruciani
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, Italy.
| | - Raimondo Germani
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, Italy.
| | - Laura Goracci
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, Italy.
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2
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Bhosle MR, Palke A, Bondle GM, Sarkate AP, Azad R, Burra PVLS. Efficient Synthesis of Densely Functionalized Pyrido[2,3-d]Pyrimidines via Three-component One-pot Domino Knoevenagel aza-Diels Alder Reaction and Induces Apoptosis in Human Cancer Cell Lines via Inhibiting Aurora A and B Kinases. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2143538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Manisha R. Bhosle
- Department of Chemistry, Dr. Babasaheb Ambedkar, Marathwada University, Aurangabad, India
| | - Amruta Palke
- Department of Chemistry, Dr. Babasaheb Ambedkar, Marathwada University, Aurangabad, India
| | - Giribala M. Bondle
- Department of Chemistry, Dr. Babasaheb Ambedkar, Marathwada University, Aurangabad, India
| | - Aniket P. Sarkate
- Department of Chemical Technology, Dr. Babasaheb Ambedkar, Marathwada University, Aurangabad, India
| | - Rajaram Azad
- Department of Animal Biology, University of Hyderabad, Hyderabad, India
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3
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Casti F, Mocci R, Porcheddu A. From amines to (form)amides: a simple and successful mechanochemical approach. Beilstein J Org Chem 2022; 18:1210-1216. [PMID: 36158174 PMCID: PMC9490066 DOI: 10.3762/bjoc.18.126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 09/01/2022] [Indexed: 01/01/2023] Open
Abstract
Two easily accessible routes for preparing an array of formylated and acetylated amines under mechanochemical conditions are presented. The two methodologies exhibit complementary features as they enable the derivatization of aliphatic and aromatic amines.
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Affiliation(s)
- Federico Casti
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, Cittadella Universitaria, 09042 Cagliari, Italy
| | - Rita Mocci
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, Cittadella Universitaria, 09042 Cagliari, Italy
| | - Andrea Porcheddu
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, Cittadella Universitaria, 09042 Cagliari, Italy
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4
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Oh IS, Seo YJ, Hyun JY, Lim HJ, Lee DH, Park SJ. Acid-Catalyzed Hydrolysis and Intramolecular Cyclization of N-Cyano Sulfoximines for the Synthesis of Thiadiazine 1-Oxides. ACS OMEGA 2022; 7:2160-2169. [PMID: 35071904 PMCID: PMC8771986 DOI: 10.1021/acsomega.1c05570] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 12/27/2021] [Indexed: 05/17/2023]
Abstract
Herein, we describe a novel approach for the practical synthesis of thiadiazine 1-oxides 10. The first example of an intramolecular cyclization with 2-N-cyano-sulfonimidoyl amides 9 to form the desired thiadiazine 1-oxides 10 was developed. One-pot acid-induced hydrolysis of the cyano group and the intramolecular cyclocondensation protocol readily provided various heterocyclic frameworks in good to moderate yields. Notably, the crystal structures of N-urea sulfoximine 11 and thiadiazine 1-oxide 10i have been determined using X-ray crystallography.
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Affiliation(s)
- In Seok Oh
- Department
of Drug Discovery, Korea Research Institute
of Chemical Technology, Daejeon 34114, Republic of Korea
- Department
of Chemistry, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Republic
of Korea
| | - Ye Ji Seo
- Department
of Drug Discovery, Korea Research Institute
of Chemical Technology, Daejeon 34114, Republic of Korea
- Department
of Medicinal and Pharmaceutical Chemistry, University of Science & Technology, Daejeon 34113, Republic of Korea
| | - Ji Young Hyun
- Department
of Drug Discovery, Korea Research Institute
of Chemical Technology, Daejeon 34114, Republic of Korea
- Department
of Medicinal and Pharmaceutical Chemistry, University of Science & Technology, Daejeon 34113, Republic of Korea
| | - Hwan Jung Lim
- Department
of Drug Discovery, Korea Research Institute
of Chemical Technology, Daejeon 34114, Republic of Korea
- Department
of Medicinal and Pharmaceutical Chemistry, University of Science & Technology, Daejeon 34113, Republic of Korea
| | - Duck-Hyung Lee
- Department
of Chemistry, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Republic
of Korea
| | - Seong Jun Park
- Department
of Drug Discovery, Korea Research Institute
of Chemical Technology, Daejeon 34114, Republic of Korea
- Department
of Medicinal and Pharmaceutical Chemistry, University of Science & Technology, Daejeon 34113, Republic of Korea
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5
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Sutar SM, Kalkhambkar RG. Ultrasonic Assisted Facile Synthesis of
N
‐Arylamides Using Nitriles and 1‐Aryltriazenes Precursors Promoted by Brønsted Acidic Ionic Liquid under Metal‐Free Conditions. ChemistrySelect 2021. [DOI: 10.1002/slct.202101855] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Suraj M. Sutar
- Department of Chemistry Karnatak University's Karnatak Science College Dharwad Karnatak 580001 India
| | - Rajesh G. Kalkhambkar
- Department of Chemistry Karnatak University's Karnatak Science College Dharwad Karnatak 580001 India
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6
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Wang B, Cao D, Ma X, Feng Y, Zhang L, Zhang Y, Liu C. Synthesis of N-arylacetamides via amination of aryltriazenes with acetonitrile under metal-free and mild conditions. ARAB J CHEM 2021. [DOI: 10.1016/j.arabjc.2021.103158] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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7
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Berton P, Tian H, Rogers RD. Phase Behavior of Aqueous Biphasic Systems with Choline Alkanoate Ionic Liquids and Phosphate Solutions: The Influence of pH. Molecules 2021; 26:1702. [PMID: 33803761 PMCID: PMC8003127 DOI: 10.3390/molecules26061702] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Revised: 03/11/2021] [Accepted: 03/15/2021] [Indexed: 01/26/2023] Open
Abstract
Aqueous biphasic systems (ABS) composed of the choline alkanoate ionic liquids (ILs) choline acetate [Cho][OAc], choline propanoate [Cho][Pro], choline butyrate [Cho][But], and choline hexanoate [Cho][Hex], mixed with K3PO4 solutions at pH 7.2 and 14.5, were prepared and their phase diagrams were compared. The ability to form ABS with alkaline K3PO4 solutions decreased in the order [Cho][OAc] ≈ [Cho][Pro] > [Cho][But] > [Cho][Hex], while with neutral K3PO4 solutions, [Cho][OAc] could not form an ABS, and the other three ILs performed similarly. All of the biphasic regions of the ABS decreased with the increase in pH. 1H-NMR data indicated anion exchange between phases in ABS at neutral pH. The ABS at neutral pH were evaluated to extract the triazine herbicides simazine, cyanazine, and atrazine, and the ABS formed by [Cho][Pro] and the pH 7.2 K3PO4 solution has shown extraction recoveries higher than 90%.
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Affiliation(s)
- Paula Berton
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A 0B8, Canada;
- Chemical and Petroleum Engineering Department, University of Calgary, 2500 University Drive NW, Calgary, AB T2N 1N4, Canada
| | - Hongzhe Tian
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A 0B8, Canada;
- Plant Protection College, Shenyang Agricultural University, 120 Dongling Road, Shenyang 110161, China
| | - Robin D. Rogers
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A 0B8, Canada;
- 525 Solutions Inc., P.O. Box 2206, Tuscaloosa, AL 35403, USA
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8
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Omprakash Rathi J, Subray Shankarling G. Recent Advances in the Protection of Amine Functionality: A Review. ChemistrySelect 2020. [DOI: 10.1002/slct.202000764] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Jyoti Omprakash Rathi
- Department of Dyestuff TechnologyInstitute of Chemical Technology N. P. Marg, Matunga (E) Mumbai 400 019 India
| | - Ganapati Subray Shankarling
- Department of Dyestuff TechnologyInstitute of Chemical Technology N. P. Marg, Matunga (E) Mumbai 400 019 India
- Department of Dyestuff TechnologyInstitute of Chemical Technology N. P. Marg, Matunga (E) Mumbai 400 019 India
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9
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Kalla RMN, Reddy SS, Kim I. Acylation of Phenols, Alcohols, Thiols, Amines and Aldehydes Using Sulfonic Acid Functionalized Hyper-Cross-Linked Poly(2-naphthol) as a Solid Acid Catalyst. Catal Letters 2019. [DOI: 10.1007/s10562-019-02811-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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10
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Naidu Kalla RM, Karunakaran RS, Balaji M, Kim I. Catalyst‐Free Synthesis of Xanthene and Pyrimidine‐Fused Heterocyclic Derivatives at Water‐Ethanol Medium and Their Antioxidant Properties. ChemistrySelect 2019. [DOI: 10.1002/slct.201803449] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Reddi Mohan Naidu Kalla
- Department of Polymer Science and EngineeringPusan National University Busan Republic of Korea
| | | | - Meriga Balaji
- Department of BiochemistrySri Venkateswara University Tirupati 517502 India
| | - Il Kim
- Department of Polymer Science and EngineeringPusan National University Busan Republic of Korea
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11
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Sonawane RB, Rasal NK, Bhange DS, Jagtap SV. Copper-(II) Catalyzed N
-Formylation and N
-Acylation of Aromatic, Aliphatic, and Heterocyclic Amines and a Preventive Study in the C-N Cross Coupling of Amines with Aryl Halides. ChemCatChem 2018. [DOI: 10.1002/cctc.201800609] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Rahul B. Sonawane
- Department of Chemistry; Baburaoji Gholap College; Affiliated to Savitribai Phule Pune University; Pune 411027 Sangvi India
| | - Nishant K. Rasal
- Department of Chemistry; Baburaoji Gholap College; Affiliated to Savitribai Phule Pune University; Pune 411027 Sangvi India
| | - Dattatraya S. Bhange
- Department of Chemistry; Baburaoji Gholap College; Affiliated to Savitribai Phule Pune University; Pune 411027 Sangvi India
| | - Sangeeta V. Jagtap
- Department of Chemistry; Baburaoji Gholap College; Affiliated to Savitribai Phule Pune University; Pune 411027 Sangvi India
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12
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Kalla RN, Hong SC, Kim I. Synthesis of Bis(indolyl)methanes Using Hyper-Cross-Linked Polyaromatic Spheres Decorated with Bromomethyl Groups as Efficient and Recyclable Catalysts. ACS OMEGA 2018; 3:2242-2253. [PMID: 31458526 PMCID: PMC6641398 DOI: 10.1021/acsomega.7b01925] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 02/09/2018] [Indexed: 06/10/2023]
Abstract
Highly uniform and hyper-cross-linked polyphenanthrene and polypyrene microspheres were synthesized by Friedel-Crafts bromomethylation of phenanthrene (Phn) and pyrene (Py) in the presence of zinc bromide as a catalyst, followed by self-polymerization of bromomethylated Phn and Py. The resultant 3-D carbon microspheres consisting of micro-, meso-, and macropores bear peripheral unreacted bromomethyl groups, which are directly utilized as catalysts to efficiently promote the electrophilic substitution reaction of indoles with aldehydes to yield a variety of bis(indolyl)methanes. The important features of this catalysis are easy catalyst synthesis, high product yields, environmental benignity, short reaction time, broad substrate scope, use of nontoxic solvents, and recyclability.
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Affiliation(s)
- Reddi
Mohan Naidu Kalla
- BK21
PLUS Center for Advanced Chemical Technology, Department of Polymer
Science and Engineering, Pusan National
University, Geumjeong-gu, Busan 609-735, Republic
of Korea
| | - Sung Chul Hong
- Department
of Nanotechnology and Advanced Materials Engineering, Sejong University, 209
Neungdong-ro, Gwangjin-gu, Seoul 143-747, Republic of Korea
| | - Il Kim
- BK21
PLUS Center for Advanced Chemical Technology, Department of Polymer
Science and Engineering, Pusan National
University, Geumjeong-gu, Busan 609-735, Republic
of Korea
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13
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Arafa WAA. Sustainable Catalytic Process with a High Eco-scale Score for the Synthesis of Novel Series of Bischalcones through Claisen-Schmidt Condensation. J Heterocycl Chem 2017. [DOI: 10.1002/jhet.3063] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Wael A. A. Arafa
- Chemistry Department, College of Science; Aljouf University; P.O. Box 72341 Sakaka Aljouf Kingdom of Saudi Arabia
- Chemistry Department, Faculty of Science; Fayoum University; P.O. Box 63514 Fayoum City Egypt
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14
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Kalla RMN, Bae J, Kim I. Catalyst-free ultrasonic-promoted multicomponent synthesis of tertiary α-amino phosphonates. NEW J CHEM 2017. [DOI: 10.1039/c7nj00944e] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A highly efficient and green protocol has been developed for the synthesis of novel tertiary α-amino phosphonates via a catalyst-free multi-component Kabachnik–Fields reaction under ultrasound irradiation.
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Affiliation(s)
- Reddi Mohan Naidu Kalla
- BK21 PLUS Centre for Advanced Chemical Technology
- Department of Polymer Science and Engineering
- Pusan National University
- Busan 609-735
- Republic of Korea
| | - Jaeyeong Bae
- BK21 PLUS Centre for Advanced Chemical Technology
- Department of Polymer Science and Engineering
- Pusan National University
- Busan 609-735
- Republic of Korea
| | - Il Kim
- BK21 PLUS Centre for Advanced Chemical Technology
- Department of Polymer Science and Engineering
- Pusan National University
- Busan 609-735
- Republic of Korea
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