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Esrafili MD, Mohammadian-Sabet F, Vessally E. An ab initio study on substituent and cooperative effects in bifurcated fluorine bonds. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1257828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Mehdi D. Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Fariba Mohammadian-Sabet
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Esmail Vessally
- Department of Chemistry, Payame Noor University, Tehran, Iran
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Esrafili MD, Vessally E, Solimannejad M. Symmetric bifurcated halogen bonds: substituent and cooperative effects. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1253882] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Mehdi D. Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Esmail Vessally
- Department of Chemistry, Payame Noor University, Tehran, Iran
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An X, Jiang L, Li Q, Li W, Cheng J. Prediction and characterization of halogen bonds involving formamidine and its derivatives. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 138:195-202. [PMID: 25498814 DOI: 10.1016/j.saa.2014.11.064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2014] [Revised: 10/21/2014] [Accepted: 11/20/2014] [Indexed: 06/04/2023]
Abstract
Ab initio calculations have been carried out for the complexes of formamidine (FA) and some representative halogenated molecules XY (X=Cl, Br, and I; Y=F, CCH, CF3, CN, and NC). The FA-(Z) complex combines with the halogenated molecule through a halogen bond, while the FA-(E) complex is stabilized jointly by both a halogen bond and a X⋯H interaction. The FA-(E) complex is more stable than the FA-(Z) counterpart, with the interaction energy of -3.4 to -23.4kcal/mol, indicating that FA is a good electron donor in halogen bonding. The methyl substituent particularly one at the imino nitrogen atom of FA has an enhancing effect on the strength of halogen bond. The similar effect is found for the phenyl and pyridyl substituents, depending on the FA conformation and substitution position of pyridyl. The stability of stronger halogen bonding is mainly attributed to electrostatic and polarization energies, which is different from the weak one with an electrostatic nature.
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Affiliation(s)
- Xiulin An
- College of Life Science, Yantai University, Yantai 264005, People's Republic of China
| | - Lixia Jiang
- Foreign Language College, Heibei North University, Zhangjiakou 075100, People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China.
| | - Wenzuo Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Jianbo Cheng
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
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Li QZ, Li HB. Hydrogen Bonds Involving Radical Species. CHALLENGES AND ADVANCES IN COMPUTATIONAL CHEMISTRY AND PHYSICS 2015. [DOI: 10.1007/978-3-319-14163-3_5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Lv H, Zhuo HY, Li QZ, Yang X, Li WZ, Cheng JB. Halogen bonds with N-heterocyclic carbenes as halogen acceptors: a partially covalent character. Mol Phys 2014. [DOI: 10.1080/00268976.2014.926031] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Li Q, Guo X, Yang X, Li W, Cheng J, Li HB. A σ-hole interaction with radical species as electron donors: does single-electron tetrel bonding exist? Phys Chem Chem Phys 2014; 16:11617-25. [DOI: 10.1039/c4cp01209g] [Citation(s) in RCA: 105] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
A single-electron tetrel bond was predicted and characterized in FXH3⋯CH3 (X = C, Si, Ge, and Sn) complexes.
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Affiliation(s)
- Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005, People's Republic of China
| | - Xin Guo
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005, People's Republic of China
| | - Xin Yang
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005, People's Republic of China
| | - Wenzuo Li
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005, People's Republic of China
| | - Jianbo Cheng
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005, People's Republic of China
| | - Hai-Bei Li
- School of Ocean
- Shandong University
- Weihai 264209, People's Republic of China
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Tian W, Sun K, Li Q, Li W, Cheng J. Substitution effect of superhalogens in MX3MCN-YF and MX3MCCY-NH3 complexes: Comparison with XMCN-YF and XMCCY-NH3. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.08.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Tian W, Huang X, Li Q, Li W, Cheng J, Gong B. Effect of superalkali substituents on the strengths and properties of hydrogen and halogen bonds. J Mol Model 2012. [DOI: 10.1007/s00894-012-1685-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Li QZ, Li R, Jiang SN, Li WZ, Cheng JB. The structure, properties, and nature of C–Br⋯F halogen bond involving HArF: Substitution, hybridization, and nonadditivity. J Fluor Chem 2012. [DOI: 10.1016/j.jfluchem.2011.11.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Theoretical characterization of single-electron iodine-bond weak interactions in CH3…I-Y(Y = BH2, H, CH3, C2H3, C2H, CN, NC) systems. CHINESE SCIENCE BULLETIN-CHINESE 2012. [DOI: 10.1007/s11434-011-4797-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Li QZ, Qi H, Li R, Liu XF, Li WZ, Cheng JB. Prediction and characterization of a chalcogen–hydride interaction with metal hybrids as an electron donor in F2CS–HM and F2CSe–HM (M = Li, Na, BeH, MgH, MgCH3) complexes. Phys Chem Chem Phys 2012; 14:3025-30. [DOI: 10.1039/c2cp23664h] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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The single-electron hydrogen, lithium, and halogen bonds with HBe, H2B, and H3C radicals as the electron donor: an ab initio study. Struct Chem 2011. [DOI: 10.1007/s11224-011-9884-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Li Q, Junling Z, Li R, Li W, Cheng J, Gong B. Rare gas atomic number dependence of the halogen bond in HRgF–XCCF (Rg=He, Ar, Kr; X=Cl, Br) complex. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.05.027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Li R, Li Q, Cheng J, Liu Z, Li W. The Prominent Enhancing Effect of the Cation-π Interaction on the Halogen-Hydride Halogen Bond in M1⋅⋅⋅C6H5X⋅⋅⋅HM2. Chemphyschem 2011; 12:2289-95. [DOI: 10.1002/cphc.201100237] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Revised: 04/30/2011] [Indexed: 11/06/2022]
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Liu YZ, Yuan K, Lv LL, Zhu YC, Tang HA, Zuo GF, Li ZF. Inverse Halogen Bonds Interactions Involving Br Atom in the Electronic Deficiency Systems of CH 3⊕··· Br—Y (Y=H, CCH, CN, NC). CHINESE J CHEM PHYS 2011. [DOI: 10.1088/1674-0068/24/03/284-294] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Dong XF, Ren FD, Cao DL, Wang WN, Zhang FQ. A MP2(full) theoretical investigation on the π-halogen interaction between OCBBCO and X1X2 (X1, X2=F, Cl, Br). ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2010.09.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Cheng J, Li R, Li Q, Jing B, Liu Z, Li W, Gong B, Sun J. Prominent Effect of Alkali Metals in Halogen-Bonded Complex of MCCBr−NCM′ (M and M′ = H, Li, Na, F, NH2, and CH3). J Phys Chem A 2010; 114:10320-5. [DOI: 10.1021/jp105891c] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jianbo Cheng
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Ran Li
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Bo Jing
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Zhenbo Liu
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Wenzuo Li
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Baoan Gong
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Jiazhong Sun
- The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
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Zhou ZJ, Liu HL, Huang XR, Li QZ, Sun CC. Effect of substitution and cooperativity on the Cl–F blue shift in single-electron halogen-bonded H3C ··· ClF complex. Mol Phys 2010. [DOI: 10.1080/00268976.2010.503198] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Can the positive aromatic ring be as π-electron donor in π-halogen bond? A MP2 theoretical investigation on the unusual π-halogen bond interaction between three-membered ring $$ \left( {\hbox{BNN}} \right)_3^{+} $$ and X1X2 (X1, X2 = F, Cl, Br). J Mol Model 2010; 17:929-37. [DOI: 10.1007/s00894-010-0790-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2010] [Accepted: 06/21/2010] [Indexed: 10/19/2022]
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Zhang X, Zeng Y, Li X, Meng L, Zheng S. Comparison in the complexes of oxygen-containing σ-electron donor with hydrogen halide and dihalogen molecules. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2010.03.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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22
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Li Z, Shi X, Tang H, Zhang J. Theoretical study of the interaction mechanism of single-electron halogen bond complexes H3C⋯Br-Y (Y = H, CN, NC, CCH, C2H3). Sci China Chem 2010. [DOI: 10.1007/s11426-010-0019-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Li Q, Yuan H, Jing B, Liu Z, Li W, Cheng J, Gong B, Sun J. Theoretical study of halogen bonding between FnH3−nCBr (n=0, 1, 2, 3) and HMgH. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2009.12.024] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Li ZF, Li HX, Zhu YC, Zuo GF. Theoretical prediction and the characters of a new type of weak interaction: A single-electron sodium bond system with H–Be as an electron donor and Na–Y (Y=H, OH, F, CCH, CN and NC) as electron acceptors. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.10.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Hammerum S. Alkyl Radicals as Hydrogen Bond Acceptors: Computational Evidence. J Am Chem Soc 2009; 131:8627-35. [DOI: 10.1021/ja901854t] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Steen Hammerum
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
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Li ZF, Shi XN, Liu YZ, Tang HA, Zhang JY. Non-additivity of Methyl Group in the Single-electron Lithium Bond of H3C LiH Complex. CHINESE J CHEM PHYS 2009. [DOI: 10.1088/1674-0068/22/03/303-309] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Zhi-Feng L, Yuan-Cheng Z, Hui-Xue L. Prediction and characterization of the single-electron sodium bond complexes Y–C⋯Na–H [Y = H3, H3CH2, (H3C)2H and (H3C)3]. Phys Chem Chem Phys 2009; 11:11113-20. [DOI: 10.1039/b913363a] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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