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For: Zhou HX, McCammon JA. The gates of ion channels and enzymes. Trends Biochem Sci 2009;35:179-85. [PMID: 19926290 DOI: 10.1016/j.tibs.2009.10.007] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2009] [Revised: 10/26/2009] [Accepted: 10/27/2009] [Indexed: 02/01/2023]
Number Cited by Other Article(s)
1
Lee Y, Jeong HS, Jung S, Hwang J, Le CTH, Jun SH, Du EJ, Kang K, Kim BG, Lim HH, Lee S. Cryo-EM structures of the plant anion channel SLAC1 from Arabidopsis thaliana suggest a combined activation model. Nat Commun 2023;14:7345. [PMID: 37963863 PMCID: PMC10645844 DOI: 10.1038/s41467-023-43193-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 11/02/2023] [Indexed: 11/16/2023]  Open
2
Sučec I, Mammeri NE, Dregni AJ, Hong M. Rapid Determination of the Topology of Oligomeric α-Helical Membrane Proteins by Water- and Lipid-Edited Methyl NMR. J Phys Chem B 2023;127:7518-7530. [PMID: 37606918 PMCID: PMC10893779 DOI: 10.1021/acs.jpcb.3c05295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2023]
3
Understanding Life at High Temperatures: Relationships of Molecular Channels in Enzymes of Methanogenic Archaea and Their Growth Temperatures. Int J Mol Sci 2022;23:ijms232315149. [PMID: 36499474 PMCID: PMC9741079 DOI: 10.3390/ijms232315149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/18/2022] [Accepted: 11/28/2022] [Indexed: 12/04/2022]  Open
4
Saha S, Mohanta S, Das R, Dalai R, Divyanshi, Tiwari N, Tiwari A, Kumar A, Goswami C. Ratio of Hydrophobic-Hydrophilic and Positive-Negative Residues at Lipid-Water-Interface Influences Surface Expression and Channel Gating of TRPV1. J Membr Biol 2022;255:319-339. [PMID: 35608627 DOI: 10.1007/s00232-022-00243-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 05/03/2022] [Indexed: 12/19/2022]
5
Gisriel CJ, Wang J, Liu J, Flesher DA, Reiss KM, Huang HL, Yang KR, Armstrong WH, Gunner MR, Batista VS, Debus RJ, Brudvig GW. High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium, Synechocystis sp. PCC 6803. Proc Natl Acad Sci U S A 2022;119:e2116765118. [PMID: 34937700 PMCID: PMC8740770 DOI: 10.1073/pnas.2116765118] [Citation(s) in RCA: 51] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/18/2021] [Indexed: 12/15/2022]  Open
6
Zhu C, Zhang AM, Li Y, Li HX, Qian Y, Fu Y, Wu X, Li Y. A biomimetic metal–organic framework with cuboid inner cavities for enantioselective separation. Inorg Chem Front 2022. [DOI: 10.1039/d2qi00152g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
7
OUP accepted manuscript. Bioinformatics 2022. [DOI: 10.1093/bioinformatics/btac061] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Sadiq SK, Muñiz Chicharro A, Friedrich P, Wade RC. Multiscale Approach for Computing Gated Ligand Binding from Molecular Dynamics and Brownian Dynamics Simulations. J Chem Theory Comput 2021;17:7912-7929. [PMID: 34739248 DOI: 10.1021/acs.jctc.1c00673] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
9
Islam MS, Gaston JP, Baker MAB. Fluorescence Approaches for Characterizing Ion Channels in Synthetic Bilayers. MEMBRANES 2021;11:857. [PMID: 34832086 PMCID: PMC8619978 DOI: 10.3390/membranes11110857] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 10/25/2021] [Accepted: 10/28/2021] [Indexed: 12/12/2022]
10
Meng S, An R, Li Z, Schwaneberg U, Ji Y, Davari MD, Wang F, Wang M, Qin M, Nie K, Liu L. Tunnel engineering for modulating the substrate preference in cytochrome P450BsβHI. BIORESOUR BIOPROCESS 2021;8:26. [PMID: 38650198 PMCID: PMC10992877 DOI: 10.1186/s40643-021-00379-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 03/25/2021] [Indexed: 01/07/2023]  Open
11
Langan PS, Vandavasi VG, Kopec W, Sullivan B, Afonne PV, Weiss KL, de Groot BL, Coates L. The structure of a potassium-selective ion channel reveals a hydrophobic gate regulating ion permeation. IUCRJ 2020;7:835-843. [PMID: 32939275 PMCID: PMC7467165 DOI: 10.1107/s2052252520008271] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
12
Zhang Y, Zhao J, Kan Y, Ji R, Pan J, Huang W, Xu Z, Si W, Sha J. Concentration effects on capture rate and translocation configuration of nanopore-based DNA detection. Electrophoresis 2020;41:1523-1528. [PMID: 32529653 DOI: 10.1002/elps.202000016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 05/20/2020] [Accepted: 05/21/2020] [Indexed: 01/21/2023]
13
Spatiotemporal multiscale molecular cavity visualization and visual analysis. J Vis (Tokyo) 2020. [DOI: 10.1007/s12650-020-00646-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
14
Uzdensky AB. Multifunctional Proteins. Biophysics (Nagoya-shi) 2020. [DOI: 10.1134/s0006350920030227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
15
Sacquin-Mora S. Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins. J R Soc Interface 2019;16:20190075. [PMID: 31288649 DOI: 10.1098/rsif.2019.0075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Adhikary R, Zimmermann J, Stanfield RL, Wilson IA, Yu W, Oda M, Romesberg FE. Structure and Dynamics of Stacking Interactions in an Antibody Binding Site. Biochemistry 2019;58:2987-2995. [PMID: 31243995 DOI: 10.1021/acs.biochem.9b00119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
17
Xing J, Mei H, Huang S, Zhang D, Pan X. An Energetically Favorable Ligand Entrance Gate of a Multidrug Transporter Revealed by Partial Nudged Elastic Band Simulations. Comput Struct Biotechnol J 2019;17:319-323. [PMID: 30899446 PMCID: PMC6406077 DOI: 10.1016/j.csbj.2019.02.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 02/14/2019] [Accepted: 02/15/2019] [Indexed: 11/08/2022]  Open
18
Perini DA, Alcaraz A, Queralt-Martín M. Lipid Headgroup Charge and Acyl Chain Composition Modulate Closure of Bacterial β-Barrel Channels. Int J Mol Sci 2019;20:ijms20030674. [PMID: 30764475 PMCID: PMC6386941 DOI: 10.3390/ijms20030674] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 01/30/2019] [Accepted: 01/31/2019] [Indexed: 12/14/2022]  Open
19
Feng Y, Wang Y, Chu H, Fan Y, Cao X, Liu Y, Li G, Xue S. Stereoselective catalysis controlled by a native leucine or variant isoleucine wing‐gatekeeper in 2‐haloacid dehalogenase. FEBS Lett 2018;593:308-318. [DOI: 10.1002/1873-3468.13309] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Revised: 11/21/2018] [Accepted: 11/24/2018] [Indexed: 11/11/2022]
20
Bykhovskaia M. Molecular Dynamics Simulations of the SNARE Complex. Methods Mol Biol 2018;1860:3-13. [PMID: 30317495 DOI: 10.1007/978-1-4939-8760-3_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
21
Liu H, Liu L, Cheng P, Huang X, Gong M. An odorant receptor from Anopheles sinensis in China is sensitive to oviposition attractants. Malar J 2018;17:348. [PMID: 30290802 PMCID: PMC6173891 DOI: 10.1186/s12936-018-2501-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Accepted: 10/01/2018] [Indexed: 01/01/2023]  Open
22
Mahinthichaichan P, Morris DM, Wang Y, Jensen GJ, Tajkhorshid E. Selective Permeability of Carboxysome Shell Pores to Anionic Molecules. J Phys Chem B 2018;122:9110-9118. [PMID: 30193460 PMCID: PMC6311388 DOI: 10.1021/acs.jpcb.8b06822] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
23
Płuciennik A, Stolarczyk M, Bzówka M, Raczyńska A, Magdziarz T, Góra A. BALCONY: an R package for MSA and functional compartments of protein variability analysis. BMC Bioinformatics 2018;19:300. [PMID: 30107777 PMCID: PMC6092823 DOI: 10.1186/s12859-018-2294-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Accepted: 07/23/2018] [Indexed: 01/08/2023]  Open
24
Guo L, Zhao H, Jiang Y. Expressional and functional interactions of two Apis cerana cerana olfactory receptors. PeerJ 2018;6:e5005. [PMID: 29910990 PMCID: PMC6001824 DOI: 10.7717/peerj.5005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Accepted: 05/29/2018] [Indexed: 11/20/2022]  Open
25
Zheng W, Yang X, Hu R, Cai R, Hofmann L, Wang Z, Hu Q, Liu X, Bulkley D, Yu Y, Tang J, Flockerzi V, Cao Y, Cao E, Chen XZ. Hydrophobic pore gates regulate ion permeation in polycystic kidney disease 2 and 2L1 channels. Nat Commun 2018;9:2302. [PMID: 29899465 PMCID: PMC5998024 DOI: 10.1038/s41467-018-04586-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 05/01/2018] [Indexed: 01/20/2023]  Open
26
Kaushik S, Marques SM, Khirsariya P, Paruch K, Libichova L, Brezovsky J, Prokop Z, Chaloupkova R, Damborsky J. Impact of the access tunnel engineering on catalysis is strictly ligand‐specific. FEBS J 2018;285:1456-1476. [DOI: 10.1111/febs.14418] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2017] [Revised: 02/02/2018] [Accepted: 02/20/2018] [Indexed: 01/01/2023]
27
Sharma B, Jamdar SN, Ghosh B, Yadav P, Kumar A, Kundu S, Goyal VD, Makde RD. Active site gate of M32 carboxypeptidases illuminated by crystal structure and molecular dynamics simulations. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017;1865:1406-1415. [PMID: 28844748 DOI: 10.1016/j.bbapap.2017.07.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Revised: 07/21/2017] [Accepted: 07/24/2017] [Indexed: 01/09/2023]
28
Rauh O, Urban M, Henkes LM, Winterstein T, Greiner T, Van Etten JL, Moroni A, Kast SM, Thiel G, Schroeder I. Identification of Intrahelical Bifurcated H-Bonds as a New Type of Gate in K+ Channels. J Am Chem Soc 2017;139:7494-7503. [PMID: 28499087 PMCID: PMC6638992 DOI: 10.1021/jacs.7b01158] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
29
A Gate Hinge Controls the Epithelial Calcium Channel TRPV5. Sci Rep 2017;7:45489. [PMID: 28374795 PMCID: PMC5379628 DOI: 10.1038/srep45489] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 02/27/2017] [Indexed: 12/03/2022]  Open
30
Manglik A, Kobilka BK, Steyaert J. Nanobodies to Study G Protein-Coupled Receptor Structure and Function. Annu Rev Pharmacol Toxicol 2017;57:19-37. [PMID: 27959623 PMCID: PMC5500200 DOI: 10.1146/annurev-pharmtox-010716-104710] [Citation(s) in RCA: 171] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
31
Marques SM, Daniel L, Buryska T, Prokop Z, Brezovsky J, Damborsky J. Enzyme Tunnels and Gates As Relevant Targets in Drug Design. Med Res Rev 2016;37:1095-1139. [PMID: 27957758 DOI: 10.1002/med.21430] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Revised: 10/11/2016] [Accepted: 11/07/2016] [Indexed: 12/28/2022]
32
Brezovsky J, Babkova P, Degtjarik O, Fortova A, Gora A, Iermak I, Rezacova P, Dvorak P, Smatanova IK, Prokop Z, Chaloupkova R, Damborsky J. Engineering a de Novo Transport Tunnel. ACS Catal 2016. [DOI: 10.1021/acscatal.6b02081] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
33
Liu H, Liu T, Xie L, Wang X, Deng Y, Chen CH, James AA, Chen XG. Functional analysis of Orco and odorant receptors in odor recognition in Aedes albopictus. Parasit Vectors 2016;9:363. [PMID: 27350348 PMCID: PMC4924234 DOI: 10.1186/s13071-016-1644-9] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Accepted: 06/13/2016] [Indexed: 11/10/2022]  Open
34
Mahinthichaichan P, Gennis RB, Tajkhorshid E. All the O2 Consumed by Thermus thermophilus Cytochrome ba3 Is Delivered to the Active Site through a Long, Open Hydrophobic Tunnel with Entrances within the Lipid Bilayer. Biochemistry 2016;55:1265-78. [PMID: 26845082 DOI: 10.1021/acs.biochem.5b01255] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
35
Structural Changes Fundamental to Gating of the Cystic Fibrosis Transmembrane Conductance Regulator Anion Channel Pore. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2016;925:13-32. [PMID: 27311317 DOI: 10.1007/5584_2016_33] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
36
Carraher C, Dalziel J, Jordan MD, Christie DL, Newcomb RD, Kralicek AV. Towards an understanding of the structural basis for insect olfaction by odorant receptors. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2015;66:31-41. [PMID: 26416146 DOI: 10.1016/j.ibmb.2015.09.010] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2015] [Revised: 09/16/2015] [Accepted: 09/16/2015] [Indexed: 06/05/2023]
37
Temporal evolution of helix hydration in a light-gated ion channel correlates with ion conductance. Proc Natl Acad Sci U S A 2015;112:E5796-804. [PMID: 26460012 DOI: 10.1073/pnas.1511462112] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
38
Hermann K, Ruan Y, Hardin AM, Hadad CM, Badjić JD. Gated molecular baskets. Chem Soc Rev 2015;44:500-14. [PMID: 24927358 DOI: 10.1039/c4cs00140k] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
39
Masood TB, Sandhya S, Chandra N, Natarajan V. CHEXVIS: a tool for molecular channel extraction and visualization. BMC Bioinformatics 2015;16:119. [PMID: 25888118 PMCID: PMC4411761 DOI: 10.1186/s12859-015-0545-9] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Accepted: 03/20/2015] [Indexed: 12/11/2022]  Open
40
Bourne Y, Renault L, Marchot P. Crystal structure of snake venom acetylcholinesterase in complex with inhibitory antibody fragment Fab410 bound at the peripheral site: evidence for open and closed states of a back door channel. J Biol Chem 2014;290:1522-35. [PMID: 25411244 DOI: 10.1074/jbc.m114.603902] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
41
Lu M, Lu HP. Probing protein multidimensional conformational fluctuations by single-molecule multiparameter photon stamping spectroscopy. J Phys Chem B 2014;118:11943-55. [PMID: 25222115 PMCID: PMC4199541 DOI: 10.1021/jp5081498] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
42
General rules for the arrangements and gating motions of pore-lining helices in homomeric ion channels. Nat Commun 2014;5:4641. [PMID: 25105557 PMCID: PMC4133698 DOI: 10.1038/ncomms5641] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Accepted: 07/09/2014] [Indexed: 12/20/2022]  Open
43
Pagliara S, Dettmer SL, Keyser UF. Channel-facilitated diffusion boosted by particle binding at the channel entrance. PHYSICAL REVIEW LETTERS 2014;113:048102. [PMID: 25105657 DOI: 10.1103/physrevlett.113.048102] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Indexed: 06/03/2023]
44
Porras Gutiérrez AG, Zeitouny J, Gomila A, Douziech B, Cosquer N, Conan F, Reinaud O, Hapiot P, Le Mest Y, Lagrost C, Le Poul N. Insights into water coordination associated with the CuII/CuI electron transfer at a biomimetic Cu centre. Dalton Trans 2014;43:6436-45. [DOI: 10.1039/c3dt53548g] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
45
Kleckner IR, McElroy CA, Kuzmic P, Gollnick P, Foster MP. Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein. Biochemistry 2013;52:8855-65. [PMID: 24224873 DOI: 10.1021/bi401364v] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
46
Gora A, Brezovsky J, Damborsky J. Gates of enzymes. Chem Rev 2013;113:5871-923. [PMID: 23617803 PMCID: PMC3744840 DOI: 10.1021/cr300384w] [Citation(s) in RCA: 178] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Indexed: 12/15/2022]
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Wang PH, Bruschi M, De Gioia L, Blumberger J. Uncovering a dynamically formed substrate access tunnel in carbon monoxide dehydrogenase/acetyl-CoA synthase. J Am Chem Soc 2013;135:9493-502. [PMID: 23713976 DOI: 10.1021/ja403110s] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Koudelakova T, Chaloupkova R, Brezovsky J, Prokop Z, Sebestova E, Hesseler M, Khabiri M, Plevaka M, Kulik D, Kuta Smatanova I, Rezacova P, Ettrich R, Bornscheuer UT, Damborsky J. Engineering Enzyme Stability and Resistance to an Organic Cosolvent by Modification of Residues in the Access Tunnel. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201206708] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Koudelakova T, Chaloupkova R, Brezovsky J, Prokop Z, Sebestova E, Hesseler M, Khabiri M, Plevaka M, Kulik D, Kuta Smatanova I, Rezacova P, Ettrich R, Bornscheuer UT, Damborsky J. Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel. Angew Chem Int Ed Engl 2013;52:1959-63. [PMID: 23303607 DOI: 10.1002/anie.201206708] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2012] [Revised: 12/05/2012] [Indexed: 11/08/2022]
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Ruan Y, Wang BY, Erb JM, Chen S, Hadad CM, Badjić JD. On the role of guests in enforcing the mechanism of action of gated baskets. Org Biomol Chem 2013;11:7667-75. [DOI: 10.1039/c3ob41511b] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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