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Zhao Y, Liu Y, Cao S, Hao Q, Liu C, Li Y. Anaerobic oxidation of methane driven by different electron acceptors: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174287. [PMID: 38945238 DOI: 10.1016/j.scitotenv.2024.174287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/31/2024] [Accepted: 06/23/2024] [Indexed: 07/02/2024]
Abstract
Methane, the most significant reduced form of carbon on Earth, acts as a crucial fuel and greenhouse gas. Globally, microbial methane sinks encompass both aerobic oxidation of methane (AeOM), conducted by oxygen-utilizing methanotrophs, and anaerobic oxidation of methane (AOM), performed by anaerobic methanotrophs employing various alternative electron acceptors. These electron acceptors involved in AOM include sulfate, nitrate/nitrite, humic substances, and diverse metal oxides. The known anaerobic methanotrophic pathways comprise the internal aerobic oxidation pathway found in NC10 bacteria and the reverse methanogenesis pathway utilized by anaerobic methanotrophic archaea (ANME). Diverse anaerobic methanotrophs can perform AOM independently or in cooperation with symbiotic partners through several extracellular electron transfer (EET) pathways. AOM has been documented in various environments, including seafloor methane seepages, coastal wetlands, freshwater lakes, soils, and even extreme environments like hydrothermal vents. The environmental activities of AOM processes, driven by different electron acceptors, primarily depend on the energy yields, availability of electron acceptors, and environmental adaptability of methanotrophs. It has been suggested that different electron acceptors driving AOM may occur across a wider range of habitats than previously recognized. Additionally, it is proposed that methanotrophs have evolved flexible metabolic strategies to adapt to complex environmental conditions. This review primarily focuses on AOM, driven by different electron acceptors, discussing the associated reaction mechanisms and the habitats where these processes are active. Furthermore, it emphasizes the pivotal role of AOM in mitigating methane emissions.
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Affiliation(s)
- Yuewen Zhao
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China
| | - Yaci Liu
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China.
| | - Shengwei Cao
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China
| | - Qichen Hao
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China
| | - Chunlei Liu
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China
| | - Yasong Li
- Fujian Provincial Key Laboratory of Water Cycling and Eco-Geological Processes, Xiamen 361021, China; Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang 050061, China.
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Struik Q, Paranaíba JR, Glodowska M, Kosten S, Meulepas BMJW, Rios-Miguel AB, Jetten MSM, Lürling M, Waajen G, Nijman TPA, Veraart AJ. Fe(II)Cl2 amendment suppresses pond methane emissions by stimulating iron-dependent anaerobic oxidation of methane. FEMS Microbiol Ecol 2024; 100:fiae061. [PMID: 38632040 DOI: 10.1093/femsec/fiae061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 03/27/2024] [Accepted: 04/16/2024] [Indexed: 04/19/2024] Open
Abstract
Aquatic ecosystems are large contributors to global methane (CH4) emissions. Eutrophication significantly enhances CH4-production as it stimulates methanogenesis. Mitigation measures aimed at reducing eutrophication, such as the addition of metal salts to immobilize phosphate (PO43-), are now common practice. However, the effects of such remedies on methanogenic and methanotrophic communities-and therefore on CH4-cycling-remain largely unexplored. Here, we demonstrate that Fe(II)Cl2 addition, used as PO43- binder, differentially affected microbial CH4 cycling-processes in field experiments and batch incubations. In the field experiments, carried out in enclosures in a eutrophic pond, Fe(II)Cl2 application lowered in-situ CH4 emissions by lowering net CH4-production, while sediment aerobic CH4-oxidation rates-as found in batch incubations of sediment from the enclosures-did not differ from control. In Fe(II)Cl2-treated sediments, a decrease in net CH4-production rates could be attributed to the stimulation of iron-dependent anaerobic CH4-oxidation (Fe-AOM). In batch incubations, anaerobic CH4-oxidation and Fe(II)-production started immediately after CH4 addition, indicating Fe-AOM, likely enabled by favorable indigenous iron cycling conditions and the present methanotroph community in the pond sediment. 16S rRNA sequencing data confirmed the presence of anaerobic CH4-oxidizing archaea and both iron-reducing and iron-oxidizing bacteria in the tested sediments. Thus, besides combatting eutrophication, Fe(II)Cl2 application can mitigate CH4 emissions by reducing microbial net CH4-production and stimulating Fe-AOM.
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Affiliation(s)
- Quinten Struik
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - José R Paranaíba
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Martyna Glodowska
- Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Sarian Kosten
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Berber M J W Meulepas
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Ana B Rios-Miguel
- Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Mike S M Jetten
- Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Miquel Lürling
- Aquatic Ecology & Water Quality Management Group, Department of Environmental Sciences, Wageningen University, PO Box 47, 6700 AA, Wageningen, The Netherlands
| | - Guido Waajen
- Water Authority Brabantse Delta, 4836 AA, Breda, The Netherlands
| | - Thomas P A Nijman
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
| | - Annelies J Veraart
- Department of Ecology, Radboud Institute for Biological and Environmental Sciences, Radboud University, 6525 AJ, Nijmegen, The Netherlands
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Yan X, Chen L, Peng P, Yang F, Dai L, Zhang H, Zhao F. Dual role of birnessite on the modulation of acid production and reinforcement of interspecific electron transfer in anaerobic digestion. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167842. [PMID: 37848138 DOI: 10.1016/j.scitotenv.2023.167842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/24/2023] [Accepted: 10/12/2023] [Indexed: 10/19/2023]
Abstract
Achieving efficient anaerobic digestion of highly loaded substrates is one of the most challenging problems in the field of waste resourcing. Here, the addition of birnessite (2.0 g/L) to kitchen wastewater increased the acetate and final methane yields by 40.53 and 99.18 %, respectively, while reducing the yields of propionate and butyrate by 38.17 and 48.86 %, respectively. There were two main pathways for birnessite to enhance anaerobic digestion, one of which is to act as an electron acceptor, by inducing an alteration in the ratio of reduced-state coenzyme I in the microorganism, allowing the acid production process to proceed towards deeper oxidation. Another pathway enhances the interspecific electron transfer between bacteria and archaea and improves methane yield by optimizing the metabolic relationship. The Kyoto Encyclopedia of Genes and Genomes (KEGG) functional predictions suggest that the extracellular electron transport pathway of the microorganism is enhanced with the addition of birnessite and that its intracellular metabolic pathway is biased towards the nicotinamide adenine dinucleotide (NADH) generation pathway. This work demonstrated that anaerobic digestion facilitation by metallic minerals was not monolithic; that is, different properties of the minerals were employed to intensify the different stages of anaerobic digestion and obtain an amplification cascade.
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Affiliation(s)
- Xinyu Yan
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China; University of Chinese Academy of Sciences, 19 Yuquan Road, 100049 Beijing, China
| | - Lixiang Chen
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China
| | - Pin Peng
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China; University of Chinese Academy of Sciences, 19 Yuquan Road, 100049 Beijing, China
| | - Fan Yang
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China
| | - Liping Dai
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China; University of Chinese Academy of Sciences, 19 Yuquan Road, 100049 Beijing, China
| | - Han Zhang
- Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China
| | - Feng Zhao
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Science, 1799 Jimei Road, Xiamen 361021, Fujian, China.
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Yan Z, Du K, Yan Y, Huang R, Zhu F, Yuan X, Wang S, Ferry JG. Respiration-driven methanotrophic growth of diverse marine methanogens. Proc Natl Acad Sci U S A 2023; 120:e2303179120. [PMID: 37729205 PMCID: PMC10523532 DOI: 10.1073/pnas.2303179120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 08/04/2023] [Indexed: 09/22/2023] Open
Abstract
Anaerobic marine environments are the third largest producer of the greenhouse gas methane. The release to the atmosphere is prevented by anaerobic 'methanotrophic archaea (ANME) dependent on a symbiotic association with sulfate-reducing bacteria or direct reduction of metal oxides. Metagenomic analyses of ANME are consistent with a reverse methanogenesis pathway, although no wild-type isolates have been available for validation and biochemical investigation. Herein is reported the characterization of methanotrophic growth for the diverse marine methanogens Methanosarcina acetivorans C2A and Methanococcoides orientis sp. nov. Growth was dependent on reduction of either ferrihydrite or humic acids revealing a respiratory mode of energy conservation. Acetate and/or formate were end products. Reversal of the well-characterized methanogenic pathways is remarkably like the consensus pathways for uncultured ANME based on extensive metagenomic analyses.
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Affiliation(s)
- Zhen Yan
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
- Suzhou Research Institute, Shandong University, Suzhou, Jiangsu215123, China
| | - Kaifeng Du
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - Yunfeng Yan
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - Rui Huang
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - Fanping Zhu
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - Xianzheng Yuan
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - Shuguang Wang
- Shandong Key Laboratory of Water pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao266237, China
| | - James G. Ferry
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA16801
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Guo K, Glatter T, Paczia N, Liesack W. Asparagine Uptake: a Cellular Strategy of Methylocystis to Combat Severe Salt Stress. Appl Environ Microbiol 2023; 89:e0011323. [PMID: 37184406 PMCID: PMC10305061 DOI: 10.1128/aem.00113-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Accepted: 04/17/2023] [Indexed: 05/16/2023] Open
Abstract
Methylocystis spp. are known to have a low salt tolerance (≤1.0% NaCl). Therefore, we tested various amino acids and other well-known osmolytes for their potential to act as an osmoprotectant under otherwise growth-inhibiting NaCl conditions. Adjustment of the medium to 10 mM asparagine had the greatest osmoprotective effect under severe salinity (1.50% NaCl), leading to partial growth recovery of strain SC2. The intracellular concentration of asparagine increased to 264 ± 57 mM, with a certain portion hydrolyzed to aspartate (4.20 ± 1.41 mM). In addition to general and oxidative stress responses, the uptake of asparagine specifically induced major proteome rearrangements related to the KEGG level 3 categories of "methane metabolism," "pyruvate metabolism," "amino acid turnover," and "cell division." In particular, various proteins involved in cell division (e.g., ChpT, CtrA, PleC, FtsA, FtsH1) and peptidoglycan synthesis showed a positive expression response. Asparagine-derived 13C-carbon was incorporated into nearly all amino acids. Both the exometabolome and the 13C-labeling pattern suggest that in addition to aspartate, the amino acids glutamate, glycine, serine, and alanine, but also pyruvate and malate, were most crucially involved in the osmoprotective effect of asparagine, with glutamate being a major hub between the central carbon and amino acid pathways. In summary, asparagine induced significant proteome rearrangements, leading to major changes in central metabolic pathway activity and the sizes of free amino acid pools. In consequence, asparagine acted, in part, as a carbon source for the growth recovery of strain SC2 under severe salinity. IMPORTANCE Methylocystis spp. play a major role in reducing methane emissions into the atmosphere from methanogenic wetlands. In addition, they contribute to atmospheric methane oxidation in upland soils. Although these bacteria are typical soil inhabitants, Methylocystis spp. are thought to have limited capacity to acclimate to salt stress. This called for a thorough study into potential osmoprotectants, which revealed asparagine as the most promising candidate. Intriguingly, asparagine was taken up quantitatively and acted, at least in part, as an intracellular carbon source under severe salt stress. The effect of asparagine as an osmoprotectant for Methylocystis spp. is an unexpected finding. It may provide Methylocystis spp. with an ecological advantage in wetlands, where these methanotrophs colonize the roots of submerged vascular plants. Collectively, our study offers a new avenue into research on compounds that may increase the resilience of Methylocystis spp. to environmental change.
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Affiliation(s)
- Kangli Guo
- Methanotrophic Bacteria and Environmental Genomics/Transcriptomics Research Group, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Timo Glatter
- Core Facility for Mass Spectrometry and Proteomics, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Nicole Paczia
- Core Facility for Metabolomics and Small Molecule Mass Spectrometry, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Werner Liesack
- Methanotrophic Bacteria and Environmental Genomics/Transcriptomics Research Group, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Center for Synthetic Microbiology (SYNMIKRO), Philipps-Universität Marburg, Marburg, Germany
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Wang J, Ciais P, Smith P, Yan X, Kuzyakov Y, Liu S, Li T, Zou J. The role of rice cultivation in changes in atmospheric methane concentration and the Global Methane Pledge. GLOBAL CHANGE BIOLOGY 2023; 29:2776-2789. [PMID: 36752684 DOI: 10.1111/gcb.16631] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/03/2023] [Indexed: 05/31/2023]
Abstract
Resumption of the increase in atmospheric methane (CH4 ) concentrations since 2007 is of global concern and may partly have resulted from emissions from rice cultivation. Estimates of CH4 emissions from rice fields and abatement potential are essential to assess the contribution of improved rice management in achieving the targets of the Global Methane Pledge agreed upon by over 100 countries at COP26. However, the contribution of CH4 emissions from rice fields to the resumed CH4 growth and the global abatement potential remains unclear. In this study, we estimated the global CH4 emissions from rice fields to be 27 ± 6 Tg CH4 year-1 in the recent decade (2008-2017) based on the 2019 Refinement to the 2006 IPCC Guidelines for National Greenhouse Gas Inventories. The trend of CH4 emissions from rice cultivation showed an increase followed by no significant change and then, a stabilization over 1990-2020. Consequently, the contribution of CH4 emissions from rice fields to the renewed increase in atmospheric CH4 concentrations since 2007 was minor. We summarized the existing low-cost measures and showed that improved water and straw management could reduce one-third of global CH4 emissions from rice fields. Straw returned as biochar could reduce CH4 emissions by 12 Tg CH4 year-1 , equivalent to 10% of the total reduction of all anthropogenic emissions. We conclude that other sectors than rice cultivation must have contributed to the renewed increase in atmospheric CH4 concentrations, and that optimizing multiple mitigation measures in rice fields could contribute significantly to the abatement goal outlined in the Global Methane Pledge.
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Affiliation(s)
- Jinyang Wang
- Key Laboratory of Green and Low-carbon Agriculture in Southeastern China, Ministry of Agriculture and Rural Affairs, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing, China
| | - Philippe Ciais
- Laboratoire des Sciences du Climat et de l'Environnement (LSCE), Institut Pierre Simon Laplace, CEA/CNRS/Université de Versailles Saint-Quentin-en-Yvelines/Université de Paris Saclay, Gif-sur-Yvette, France
| | - Pete Smith
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK
| | - Xiaoyuan Yan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, University of Gottingen, Gottingen, Germany
- Peoples Friendship University of Russia (RUDN University), Moscow, Russia
| | - Shuwei Liu
- Key Laboratory of Green and Low-carbon Agriculture in Southeastern China, Ministry of Agriculture and Rural Affairs, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing, China
| | - Tingting Li
- LAPC, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, China
| | - Jianwen Zou
- Key Laboratory of Green and Low-carbon Agriculture in Southeastern China, Ministry of Agriculture and Rural Affairs, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing, China
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Yu L, He D, Yang L, Rensing C, Zeng RJ, Zhou S. Anaerobic methane oxidation coupled to ferrihydrite reduction by Methanosarcina barkeri. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 844:157235. [PMID: 35817105 DOI: 10.1016/j.scitotenv.2022.157235] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 06/21/2022] [Accepted: 07/04/2022] [Indexed: 06/15/2023]
Abstract
Fe(III) has been recognized as a potential electron sink for the anaerobic oxidation of methane (Fe-AOM) in diverse environments. However, most of previous Fe-AOM processes are limited to ANME archaea and the Fe-AOM mechanism remains unclear. Here we investigate, for the first time, the Fe-AOM performance and mechanisms by a single methanogen Methanosarcina barkeri. The results showed that M. barkeri was capable of oxidizing methane to CO2 and reducing ferrihydrite to siderite simultaneously. The presence of methane enhanced both the abundances of redox-active species (such as cytochromes) and electrochemical activity of M. barkeri. The proteomic analyses revealed that M. barkeri up-regulated the expressions of a number of methanogenic enzymes during Fe-AOM, and significantly enriched metabolic pathways of amino acid synthesis and nitrogen fixation. Metabolic inhibition experiments indicated that membrane-bound redox-active components (cytochromes, methanophenazine and F420H2:quinone oxidoreductase) were probably involved in extracellular electron transfer (EET) from cells to ferrihydrite. Overall, these results provide a deep insight into the single‑carbon metabolism and survival strategy for methanogens and suggest that methanogens may play an important role in linking methane and iron cycling in the substrate-limited environments.
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Affiliation(s)
- Linpeng Yu
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Dan He
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Lin Yang
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Christopher Rensing
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Raymond J Zeng
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
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Chen W, Yu X, Huang J, Zhao W, Ju J, Ye J, Qin H, Long Y. The synergy of Fe(III) and NO 2- drives the anaerobic oxidation of methane. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 837:155766. [PMID: 35533860 DOI: 10.1016/j.scitotenv.2022.155766] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 04/06/2022] [Accepted: 05/03/2022] [Indexed: 06/14/2023]
Abstract
The anaerobic oxidation of methane (AOM) driven by NO2- or Fe(III) alone was limited by slow electron delivery and ineffective enrichment of microbes. The flexible coupling between Fe(III) and NO2- potentially cooperated to accelerate AOM. One negative control was fed CH4 and NO2-, and four treatment reactors were supplemented with CH4, NO2- and ferric citrate (FC)/ferric chloride (FCH)/ chelate iron (FCI)/ferric hydroxide (FH) and were anaerobically operated for 1200 days to verify the synergy and promicrobial roles of Fe(III) and NO2- in improving AOM. The changes in gas and ion profiles were observed in the reactors, and microbial development was studied using 16S rRNA gene sequencing with the Illumina platform. The results indicated that the combined Fe(III) and NO2- treatment improved AOM, and their synergy followed the order of FC > FCI > FCH > FH. The biochemical reaction of Fe3+ with NO2- and its secondary process accelerated electron transfer to microbial cells and subsequently enhanced AOM in the reactors. The total organic carbon (TOC) content, NH4+ content, NO3- content, and pH value altered the dominant bacteria the most in the FC reactor, FCI, FCH, and FH groups, respectively. Several dominant bacterial species were enriched, whereas only two archaea were highly concentrated in the FC and FCI groups. Only bacteria were detected in the FCH group, and archaea contributed substantially to the FH group. These findings contribute to an improved understanding of the interactions among nitrogen, iron and CH4 that are paramount to accelerating the process of AOM for engineering applications.
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Affiliation(s)
- Weiqi Chen
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Xiuling Yu
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Juan Huang
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Wurong Zhao
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Jinwei Ju
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Jinshao Ye
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Huaming Qin
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Yan Long
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China.
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Wang Y, Li W, Baker BJ, Zhou Y, He L, Danchin A, Li Q, Gao Z. Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines. ENVIRONMENTAL MICROBIOLOGY REPORTS 2022; 14:308-319. [PMID: 35199456 DOI: 10.1111/1758-2229.13052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 02/10/2022] [Accepted: 02/11/2022] [Indexed: 06/14/2023]
Abstract
Reduced substrates produced by the serpentinization reaction under hydration of olivine may have fuelled biological processes on early Earth. To understand the adaptive strategies and carbon metabolism of the microbes in the serpentinizing ecosystems, we reconstructed 18 draft genomes representing dominant species of Omnitrophicaeota, Gammaproteobacteria and Methanobacteria from the Manleluag serpentinizing spring in Zambales, Philippines (hyperalkaline and rich in methane and hydrogen). Phylogenomics revealed that two genomes were affiliated with a candidate phylum NPL-UPA2 and the references of all our genomes were derived from ground waters, hot springs and the deep biosphere. C1 metabolism appears to be widespread as most of the genomes code for methanogenesis, CO oxidation and CO2 fixation. However, likely due to the low CO2 concentration and election acceptors, the biomass in the spring was extremely low (<103 cell/ml). Various Na+ and K+ transporters and Na+ -driving ATPases appear to be encoded by these genomes, suggesting that nutrient acquisition, bioenergetics and normal cytoplasmic pH were dependent on Na+ and K+ pumps. Our results advance our understanding of the metabolic potentials and bioenergetics of serpentinizing springs and provide a framework of the ecology of early Earth.
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Affiliation(s)
- Yong Wang
- Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, P. R. China
| | - Wenli Li
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, 572000, P. R. China
| | - Brett J Baker
- Department of Integrative Biology and Marine Science, University of Texas Austin, Austin, TX, 78373, USA
| | - Yingli Zhou
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, 572000, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Lisheng He
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, 572000, P. R. China
| | - Antoine Danchin
- Kodikos Labs, Institut Cochin, 24 rue du Faubourg Saint Jacques, Paris, 75014, France
| | - Qingmei Li
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, 572000, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Zhaoming Gao
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, 572000, P. R. China
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10
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Jadhav P, Khalid ZB, Zularisam AW, Krishnan S, Nasrullah M. The role of iron-based nanoparticles (Fe-NPs) on methanogenesis in anaerobic digestion (AD) performance. ENVIRONMENTAL RESEARCH 2022; 204:112043. [PMID: 34543635 DOI: 10.1016/j.envres.2021.112043] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 08/25/2021] [Accepted: 08/26/2021] [Indexed: 06/13/2023]
Abstract
Several strategies have been proposed to improve the performance of the anaerobic digestion (AD) process. Among them, the use of various nanoparticles (NPs) (e.g. Fe, Ag, Cu, Mn, and metal oxides) is considered one of the most effective approaches to enhance the methanogenesis stage and biogas yield. Iron-based NPs (zero-valent iron with paramagnetic properties (Fe0) and iron oxides with ferromagnetic properties (Fe3O4/Fe2O3) enhance microbial activity and minimise the inhibition effect in methanogenesis. However, comprehensive and up-to-date knowledge on the function and impact of Fe-NPs on methanogens and methanogenesis stages in AD is frequently required. This review focuses on the applicative role of iron-based NPs (Fe-NPs) in the AD methanogenesis step to provide a comprehensive understanding application of Fe-NPs. In addition, insight into the interactions between methanogens and Fe-NPs (e.g. role of methanogens, microbe interaction and gene transfer with Fe-NPs) beneficial for CH4 production rate is provided. Microbial activity, inhibition effects and direct interspecies electron transfer through Fe-NPs have been extensively discussed. Finally, further studies towards detecting effective and optimised NPs based methods in the methanogenesis stage are reported.
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Affiliation(s)
- Pramod Jadhav
- Faculty of Civil Engineering Technology, Universiti Malaysia Pahang (UMP), Lebuhraya Tun Razak, Gambang, Kuantan, Pahang, 26300, Malaysia
| | - Zaied Bin Khalid
- Faculty of Civil Engineering Technology, Universiti Malaysia Pahang (UMP), Lebuhraya Tun Razak, Gambang, Kuantan, Pahang, 26300, Malaysia
| | - A W Zularisam
- Faculty of Civil Engineering Technology, Universiti Malaysia Pahang (UMP), Lebuhraya Tun Razak, Gambang, Kuantan, Pahang, 26300, Malaysia
| | - Santhana Krishnan
- Centre of Environmental Sustainability and Water Security (IPASA), Research Institute of Sustainable Environment (RISE), Faculty of Engineering, Universiti Teknologi Malaysia (UTM), Johor Bahru, 81310, Malaysia; PSU Energy Systems Research Institute, Department of Civil Engineering, Faculty of Engineering, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand
| | - Mohd Nasrullah
- Faculty of Civil Engineering Technology, Universiti Malaysia Pahang (UMP), Lebuhraya Tun Razak, Gambang, Kuantan, Pahang, 26300, Malaysia.
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11
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Cheng S, Qin C, Xie H, Wang W, Zhang J, Hu Z, Liang S. Comprehensive evaluation of manganese oxides and iron oxides as metal substrate materials for constructed wetlands from the perspective of water quality and greenhouse effect. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 221:112451. [PMID: 34174737 DOI: 10.1016/j.ecoenv.2021.112451] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 06/04/2021] [Accepted: 06/21/2021] [Indexed: 06/13/2023]
Abstract
Manganese oxides and iron oxides have been widely introduced in constructed wetlands (CWs) for sewage treatment due to their extensiveness in nature and their ability to participate in various reactions, but their effects on greenhouse gas (GHG) emissions remain unclear. Here, a set of vertical subsurface-flow CWs (Control, Fe-VSSCWs, and Mn-VSSCWs) was established to comprehensively evaluate which are the better metal substrate materials for CWs, iron oxides or manganese oxides, through water quality and the global warming potential (GWP) of nitrous oxide (N2O), methane (CH4), and carbon dioxide (CO2). The results revealed that the removal efficiencies of chemical oxygen demand (COD), total nitrogen (TN), and total phosphorus (TP) in Mn-VSSCWs were all higher than that in Fe-VSSCWs, and manganese oxides could almost completely suppress the CH4 production and reduce GWP (from 8.15 CO2-eq/m2/h to 7.17 mg CO2-eq/m2/h), however, iron oxides promoted GWP (from 8.15 CO2-eq/m2/h to 10.84 mg CO2-eq/m2/h), so manganese oxides are the better CW substrate materials to achieve effective sewage treatment while reducing the greenhouse gas effect.
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Affiliation(s)
- Shiyi Cheng
- Environment Research Institute, Shandong University, Qingdao 266237, PR China; Jiangsu Ecological Environmental Monitoring Co., Ltd, NanJing 210004, PR China
| | - Congli Qin
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Huijun Xie
- Environment Research Institute, Shandong University, Qingdao 266237, PR China.
| | - Wenxing Wang
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Jian Zhang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Zhen Hu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
| | - Shuang Liang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, PR China
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12
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Pang J, Liu L, Liu X, Wang Y, Chen B, Wu S, Yao J, Xu X. A novel identified Pseudomonas aeruginosa, which exhibited nitrate- and nitrite-dependent methane oxidation abilities, could alleviate the disadvantages caused by nitrate supplementation in rumen fluid fermentation. Microb Biotechnol 2021; 14:1397-1408. [PMID: 33305892 PMCID: PMC8313268 DOI: 10.1111/1751-7915.13726] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 11/18/2020] [Accepted: 11/18/2020] [Indexed: 11/28/2022] Open
Abstract
After the occurrence of nitrate-dependent anaerobic methane oxidation (AMO) in rumen fluid culture was proved, the organisms that perform the denitrifying anaerobic methane oxidizing (DAMO) process in the rumen of dairy goat were investigated by establishing two enrichment culture systems, which were supplied with methane as the sole carbon source and NaNO3 or NaNO2 as the electron acceptor. Several Operational Taxonomic Units (OTU) belonging to Proteobacteria became dominant in the two enrichment systems. The identified Pseudomonas aeruginosa, which was isolated from the NaNO2 enrichment system, could individually perform a whole denitrifying anaerobic methane oxidizing process. Further in vitro rumen fermentation showed that supplementation with the isolated P. aeruginosa could reduce methane emissions, alleviate the nitrite accumulation and prevent the decrease in propionic acid product caused by nitrate supplementation.
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Affiliation(s)
- Jie Pang
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Lihui Liu
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Xiaopeng Liu
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Yi Wang
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Bin Chen
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Shengru Wu
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Junhu Yao
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
| | - Xiurong Xu
- College of Animal Science and TechnologyNorthwest A&F UniversityShaanxi712100China
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13
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Costa RB, Lens PNL, Foresti E. Methanotrophic denitrification in wastewater treatment: microbial aspects and engineering strategies. Crit Rev Biotechnol 2021; 42:145-161. [PMID: 34157918 DOI: 10.1080/07388551.2021.1931014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Anaerobic technologies are consolidated for sewage treatment and are the core processes for mining marketable products from waste streams. However, anaerobic effluents are supersaturated with methane, which represents a liability regarding greenhouse gas emissions. Meanwhile, anaerobic technologies are not capable of nitrogen removal, which is required to ensure environmental protection. Methane oxidation and denitrification processes can be combined to address both issues concurrently. Aerobic methane oxidizers can release intermediate organic compounds that can be used by conventional denitrifiers as electron donors. Alternatively, anoxic methanotrophic species combine methane oxidation with either nitrate or nitrite reduction in the same metabolism. Engineered systems need to overcome the long doubling times and low NOx consumption rates of anoxic methanotrophic microorganisms. Another commonly reported bottleneck of methanotrophic denitrification relates to gas-liquid mass transfer limitations. Although anaerobic effluents are supersaturated with methane, experimental setups usually rely on methane supply in a gaseous mode. Hence, possibilities for the application of methane-oxidation coupled to denitrification in full scale might be overlooked. Moreover, syntrophic relationships among methane oxidizers, denitrifiers, nitrifiers, and other microorganisms (such as anammox) are not well understood. Integrating mixed populations with various metabolic abilities could allow for more robust methane-driven wastewater denitrification systems. This review presents an overview of the metabolic capabilities of methane oxidation and denitrification and discusses technological aspects that allow for the application of methanotrophic denitrification at larger scales.
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Affiliation(s)
- R B Costa
- Department of Hydraulics and Sanitation, São Carlos School of Engineering (EESC), University of São Paulo (USP), São Carlos, Brazil.,National University of Ireland, Galway, Ireland
| | - P N L Lens
- National University of Ireland, Galway, Ireland
| | - E Foresti
- Department of Hydraulics and Sanitation, São Carlos School of Engineering (EESC), University of São Paulo (USP), São Carlos, Brazil
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14
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Schnakenberg A, Aromokeye DA, Kulkarni A, Maier L, Wunder LC, Richter-Heitmann T, Pape T, Ristova PP, Bühring SI, Dohrmann I, Bohrmann G, Kasten S, Friedrich MW. Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments. Front Microbiol 2021; 12:617280. [PMID: 33935987 PMCID: PMC8081031 DOI: 10.3389/fmicb.2021.617280] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 03/11/2021] [Indexed: 11/24/2022] Open
Abstract
Anaerobic methane oxidizing archaea (ANME) mediate anaerobic oxidation of methane (AOM) in marine sediments and are therefore important for controlling atmospheric methane concentrations in the water column and ultimately the atmosphere. Numerous previous studies have revealed that AOM is coupled to the reduction of different electron acceptors such as sulfate, nitrate/nitrite or Fe(III)/Mn(IV). However, the influence of electron acceptor availability on the in situ ANME community composition in sediments remains largely unknown. Here, we investigated the electron acceptor availability and compared the microbial in situ communities of three methane-rich locations offshore the sub-Antarctic island South Georgia, by Illumina sequencing and qPCR of mcrA genes. The methanic zone (MZ) sediments of Royal Trough and Church Trough comprised high sulfide concentrations of up to 4 and 19 mM, respectively. In contrast, those of the Cumberland Bay fjord accounted for relatively high concentrations of dissolved iron (up to 186 μM). Whereas the ANME community in the sulfidic sites Church Trough and Royal Trough mainly comprised members of the ANME-1 clade, the order-level clade “ANME-1-related” (Lever and Teske, 2015) was most abundant in the iron-rich site in Cumberland Bay fjord, indicating that the availability of electron acceptors has a strong selective effect on the ANME community. This study shows that potential electron acceptors for methane oxidation may serve as environmental filters to select for the ANME community composition and adds to a better understanding of the global importance of AOM.
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Affiliation(s)
- Annika Schnakenberg
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.,International Max Planck Research School of Marine Microbiology, Max Planck Institute for Marine Microbiology, Bremen, Germany
| | - David A Aromokeye
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.,MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Ajinkya Kulkarni
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.,International Max Planck Research School of Marine Microbiology, Max Planck Institute for Marine Microbiology, Bremen, Germany
| | - Lisa Maier
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany
| | - Lea C Wunder
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.,International Max Planck Research School of Marine Microbiology, Max Planck Institute for Marine Microbiology, Bremen, Germany
| | - Tim Richter-Heitmann
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany
| | - Thomas Pape
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.,Faculty of Geosciences, University of Bremen, Bremen, Germany
| | - Petra Pop Ristova
- Hydrothermal Geomicrobiology Group, MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Solveig I Bühring
- Hydrothermal Geomicrobiology Group, MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Ingrid Dohrmann
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Gerhard Bohrmann
- Faculty of Geosciences, University of Bremen, Bremen, Germany.,MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Sabine Kasten
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.,Faculty of Geosciences, University of Bremen, Bremen, Germany.,Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Michael W Friedrich
- Microbial Ecophysiology Group, Faculty of Biology/Chemistry, University of Bremen, Bremen, Germany.,MARUM - Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
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15
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Stein LY. The Long-Term Relationship between Microbial Metabolism and Greenhouse Gases. Trends Microbiol 2020; 28:500-511. [DOI: 10.1016/j.tim.2020.01.006] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 01/09/2020] [Accepted: 01/16/2020] [Indexed: 11/26/2022]
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16
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Qin Y, Ding B, Li Z, Chen S. Variation of Feammox following ammonium fertilizer migration in a wheat-rice rotation area, Taihu Lake, China. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 252:119-127. [PMID: 31146225 DOI: 10.1016/j.envpol.2019.05.055] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 05/10/2019] [Accepted: 05/12/2019] [Indexed: 06/09/2023]
Abstract
Feammox is a newly discovered and important anaerobic nitrogen (N) loss pathway, and its variation and role in removing N following the application of N fertilizer and its migration from paddies to other land use types and from surface soils to deep soils have not been thoroughly elucidated to date. In this study, field sampling and slurry incubation experiments were performed to evaluate the Feammox rate between different land use types (paddy, irrigation ditch, riparian zone and lake, 0-10 cm) and different paddy soil depths (0-70 cm) in a wheat-rice rotation area in China. Based on a 15N-labelled isotope-tracing technique and analysis of microbial communities, it was estimated that the potential Feammox rate ranged from 0.031 to 0.42 mg N kg-1 d-1 in this area. In the soil profile of the paddy, the depth of 20-30 cm was the active region of Feammox, with a value of 0.37 ± 0.057 mg N kg-1 d-1. Compared with the surface soil (0-10 cm) of the paddy (0.18 ± 0.031 mg N kg-1 d-1), the potential Feammox rate of the irrigation ditch soil was not significantly different, but that of the lake riparian soil and lake sediment were decreased by 27.27% and 32.11%, respectively (p < 0.01). Fe(III) content was the best predictor of the Feammox rate and explained the variation of the Feammox rate by 36.00% in the surface soil. At the genus level, the paddy soil at a depth of 20-30 cm had the greatest abundance of the genera in which the Fe reduction bacteria were distributed; and where Bacillus, Geobacter and Anaeromyxobacter had higher proportions. It was estimated that the potential N loss by Feammox was in the range of 7.36 (the lake) ∼43.35 (the paddy) kg N ha-1 year-1 in the surface soil of this area. Considering denitrification and the Feammox rate as a whole, we found that denitrification remained to be the main contributor to N loss in the surface soil (94.72-96.89% of N loss), although Feammox dominated N loss in the deep soil (below 0-10 cm).
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Affiliation(s)
- Yunbin Qin
- State Key Laboratory of Pollution Control and Resource Reuse, Nanjing University, 210023, China; School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, China
| | - Bangjing Ding
- State Key Laboratory of Pollution Control and Resource Reuse, Nanjing University, 210023, China; School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, China
| | - Zhengkui Li
- State Key Laboratory of Pollution Control and Resource Reuse, Nanjing University, 210023, China; School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, China.
| | - Shi Chen
- State Key Laboratory of Pollution Control and Resource Reuse, Nanjing University, 210023, China; School of the Environment, Nanjing University, Jiangsu, Nanjing, 210023, China
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17
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Bhattarai S, Cassarini C, Lens PNL. Physiology and Distribution of Archaeal Methanotrophs That Couple Anaerobic Oxidation of Methane with Sulfate Reduction. Microbiol Mol Biol Rev 2019; 83:e00074-18. [PMID: 31366606 PMCID: PMC6710461 DOI: 10.1128/mmbr.00074-18] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
In marine anaerobic environments, methane is oxidized where sulfate-rich seawater meets biogenic or thermogenic methane. In those niches, a few phylogenetically distinct microbial types, i.e., anaerobic methanotrophs (ANME), are able to grow through anaerobic oxidation of methane (AOM). Due to the relevance of methane in the global carbon cycle, ANME have drawn the attention of a broad scientific community for 4 decades. This review presents and discusses the microbiology and physiology of ANME up to the recent discoveries, revealing novel physiological types of anaerobic methane oxidizers which challenge the view of obligate syntrophy for AOM. An overview of the drivers shaping the distribution of ANME in different marine habitats, from cold seep sediments to hydrothermal vents, is given. Multivariate analyses of the abundance of ANME in various habitats identify a distribution of distinct ANME types driven by the mode of methane transport. Intriguingly, ANME have not yet been cultivated in pure culture, despite intense attempts. Further advances in understanding this microbial process are hampered by insufficient amounts of enriched cultures. This review discusses the advantages, limitations, and potential improvements for ANME laboratory-based cultivation systems.
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Affiliation(s)
- S Bhattarai
- UNESCO-IHE, Institute for Water Education, Delft, The Netherlands
| | - C Cassarini
- UNESCO-IHE, Institute for Water Education, Delft, The Netherlands
- National University of Ireland Galway, Galway, Ireland
| | - P N L Lens
- UNESCO-IHE, Institute for Water Education, Delft, The Netherlands
- National University of Ireland Galway, Galway, Ireland
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18
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Li H, Su JQ, Yang XR, Zhou GW, Lassen SB, Zhu YG. RNA Stable Isotope Probing of Potential Feammox Population in Paddy Soil. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:4841-4849. [PMID: 30978017 DOI: 10.1021/acs.est.8b05016] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Anaerobic ammonium oxidation coupled to iron reduction (Feammox) is a recently discovered pathway contributing to nitrogen loss in various ecosystems such as paddy soils and sediments. However, little is known about the microbes driving Feammox in an agricultural ecosystem. Here, we demonstrated the occurrence of Feammox in paddy soils of Southern China using a 15N isotopic tracing technique, and examined the microbial communities associated with Feammox using RNA based stable isotope probing (RNA-SIP) combined with Illumina sequencing. Feammox was detected in all collected soils with direct N2 production as the dominant Feammox pathway. It was estimated that approximately 6.91% of the applied nitrogen fertilizers were lost through Feammox in the paddy soils. RNA-SIP results showed that the composition of enriched active microbial communities were dependent on soil properties, especially the soil pH and grain size. Geobacter were enriched in most soils across various properties. The abundance of enriched GOUTA19 were significantly higher in soils with low pH than those in soils with medium pH and high pH, and the relative abundance of active Nitrososphaeraceae and Pseudomonas only increased in soils with medium and high pH during 4-day of incubation. These results suggested Feammox is a ubiquitous and important process for N loss. Geobacter, GOUTA19, Nitrososphaeraceae and Pseudomonas were active during the incubation that favored Feammox and the growth of Feammox microbes, suggesting these microbes were potentially associated with Feammox in natural agricultural soils.
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Affiliation(s)
- Hu Li
- Key Lab of Urban Environment and Health, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
| | - Jian-Qiang Su
- Key Lab of Urban Environment and Health, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
| | - Xiao-Ru Yang
- Key Lab of Urban Environment and Health, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
| | - Guo-Wei Zhou
- State Key Laboratory of Urban and Regional Ecology Research Center for Eco-Environmental Sciences , Chinese Academy of Sciences , Beijing 100085 , P. R. China
| | - Simon Bo Lassen
- Key Lab of Urban Environment and Health, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- Department of Plant and Environmental Sciences, Faculty of Science , University of Copenhagen , Thorvaldsensvej 40 , 1871 Frederiksberg , Denmark
| | - Yong-Guan Zhu
- Key Lab of Urban Environment and Health, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- Center for Excellence in Regional Atmospheric Environment, Institute of Urban Environment , Chinese Academy of Sciences , Xiamen 361021 , P. R. China
- State Key Laboratory of Urban and Regional Ecology Research Center for Eco-Environmental Sciences , Chinese Academy of Sciences , Beijing 100085 , P. R. China
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19
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He Z, Zhang Q, Feng Y, Luo H, Pan X, Gadd GM. Microbiological and environmental significance of metal-dependent anaerobic oxidation of methane. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 610-611:759-768. [PMID: 28830047 DOI: 10.1016/j.scitotenv.2017.08.140] [Citation(s) in RCA: 63] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Revised: 07/22/2017] [Accepted: 08/14/2017] [Indexed: 06/07/2023]
Abstract
Anaerobic oxidation of methane (AOM) can be coupled to the reduction of sulfate, nitrate and nitrite, which effectively reduces methane emission into the atmosphere. Recently, metal-dependent AOM (metal-AOM, AOM coupled to metal reduction) was demonstrated to occur in both environmental samples and enrichment cultures. Anaerobic methanotrophs are capable of respiration using Fe(III) or Mn(IV), whether they are in the form of soluble metal species or insoluble minerals. Given the wide distribution of Fe(III)/Mn(IV)-bearing minerals in aquatic methane-rich environments, metal-AOM is considered to be globally important, although it has generally been overlooked in previous studies. In this article, we discuss the discovery of this process, the microorganisms and mechanisms involved, environmental significance and factors influencing metal-AOM. Since metal-AOM is poorly studied to date, some discussion is included on the present understanding of sulfate- and nitrate-AOM and traditional metal reduction processes using organic substrates or hydrogen as electron donors. Metal-AOM is a relatively new research field, and therefore more studies are needed to fully characterize the process. This review summarizes current studies and discusses the many unanswered questions, which should be useful for future research in this field.
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Affiliation(s)
- Zhanfei He
- College of Environment, Zhejiang University of Technology, Hangzhou, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Qingying Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Yudong Feng
- College of Environment, Zhejiang University of Technology, Hangzhou, China
| | - Hongwei Luo
- College of Environment, Zhejiang University of Technology, Hangzhou, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China
| | - Xiangliang Pan
- College of Environment, Zhejiang University of Technology, Hangzhou, China; Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, Zhejiang University of Technology, Hangzhou, China.
| | - Geoffrey Michael Gadd
- Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK
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