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Kim T, Park H, Tanaka-Yamamoto K, Yamamoto Y. Developmental timing-dependent organization of synaptic connections between mossy fibers and granule cells in the cerebellum. Commun Biol 2023; 6:446. [PMID: 37095324 PMCID: PMC10125988 DOI: 10.1038/s42003-023-04825-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 04/07/2023] [Indexed: 04/26/2023] Open
Abstract
The long-standing hypothesis that synapses between mossy fibers (MFs) and cerebellar granule cells (GCs) are organized according to the origins of MFs and locations of GC axons, parallel fibers (PFs), is supported by recent findings. However, the mechanisms of such organized synaptic connections remain unknown. Here, using our technique that enabled PF location-dependent labeling of GCs in mice, we confirmed that synaptic connections of GCs with specific MFs originating from the pontine nucleus (PN-MFs) and dorsal column nuclei (DCoN-MFs) were gently but differentially organized according to their PF locations. We then found that overall MF-GC synaptic connectivity was biased in a way that dendrites of GCs having nearby PFs tended to connect with the same MF terminals, implying that the MF origin- and PF location-dependent organization is associated with the overall biased MF-GC synaptic connectivity. Furthermore, the development of PN-MFs preceded that of DCoN-MFs, which matches the developmental sequence of GCs that preferentially connect with each type of these MFs. Thus, our results revealed that overall MF-GC synaptic connectivity is biased in terms of PF locations, and suggested that such connectivity is likely the result of synaptic formation between developmental timing-matched partners.
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Affiliation(s)
- Taegon Kim
- Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea
| | - Heeyoun Park
- Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea
| | - Keiko Tanaka-Yamamoto
- Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
| | - Yukio Yamamoto
- Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
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Gilmer JI, Farries MA, Kilpatrick Z, Delis I, Cohen JD, Person AL. An emergent temporal basis set robustly supports cerebellar time-series learning. J Neurophysiol 2023; 129:159-176. [PMID: 36416445 PMCID: PMC9990911 DOI: 10.1152/jn.00312.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 11/14/2022] [Accepted: 11/17/2022] [Indexed: 11/24/2022] Open
Abstract
The cerebellum is considered a "learning machine" essential for time interval estimation underlying motor coordination and other behaviors. Theoretical work has proposed that the cerebellum's input recipient structure, the granule cell layer (GCL), performs pattern separation of inputs that facilitates learning in Purkinje cells (P-cells). However, the relationship between input reformatting and learning has remained debated, with roles emphasized for pattern separation features from sparsification to decorrelation. We took a novel approach by training a minimalist model of the cerebellar cortex to learn complex time-series data from time-varying inputs, typical during movements. The model robustly produced temporal basis sets from these inputs, and the resultant GCL output supported better learning of temporally complex target functions than mossy fibers alone. Learning was optimized at intermediate threshold levels, supporting relatively dense granule cell activity, yet the key statistical features in GCL population activity that drove learning differed from those seen previously for classification tasks. These findings advance testable hypotheses for mechanisms of temporal basis set formation and predict that moderately dense population activity optimizes learning.NEW & NOTEWORTHY During movement, mossy fiber inputs to the cerebellum relay time-varying information with strong intrinsic relationships to ongoing movement. Are such mossy fibers signals sufficient to support Purkinje signals and learning? In a model, we show how the GCL greatly improves Purkinje learning of complex, temporally dynamic signals relative to mossy fibers alone. Learning-optimized GCL population activity was moderately dense, which retained intrinsic input variance while also performing pattern separation.
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Affiliation(s)
- Jesse I Gilmer
- Neuroscience Graduate Program, University of Colorado School of Medicine, Aurora, Colorado
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, Colorado
| | - Michael A Farries
- Knoebel Institute for Healthy Aging, University of Denver, Denver, Colorado
| | - Zachary Kilpatrick
- Department of Applied Mathematics, University of Colorado Boulder, Boulder, Colorado
| | - Ioannis Delis
- School of Biomedical Sciences, University of Leeds, Leeds, United Kingdom
| | - Jeremy D Cohen
- University of North Carolina Neuroscience Center, Chapel Hill, North Carolina
| | - Abigail L Person
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, Colorado
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Shuster SA, Wagner MJ, Pan-Doh N, Ren J, Grutzner SM, Beier KT, Kim TH, Schnitzer MJ, Luo L. The relationship between birth timing, circuit wiring, and physiological response properties of cerebellar granule cells. Proc Natl Acad Sci U S A 2021; 118:e2101826118. [PMID: 34088841 PMCID: PMC8201928 DOI: 10.1073/pnas.2101826118] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Cerebellar granule cells (GrCs) are usually regarded as a uniform cell type that collectively expands the coding space of the cerebellum by integrating diverse combinations of mossy fiber inputs. Accordingly, stable molecularly or physiologically defined GrC subtypes within a single cerebellar region have not been reported. The only known cellular property that distinguishes otherwise homogeneous GrCs is the correspondence between GrC birth timing and the depth of the molecular layer to which their axons project. To determine the role birth timing plays in GrC wiring and function, we developed genetic strategies to access early- and late-born GrCs. We initiated retrograde monosynaptic rabies virus tracing from control (birth timing unrestricted), early-born, and late-born GrCs, revealing the different patterns of mossy fiber input to GrCs in vermis lobule 6 and simplex, as well as to early- and late-born GrCs of vermis lobule 6: sensory and motor nuclei provide more input to early-born GrCs, while basal pontine and cerebellar nuclei provide more input to late-born GrCs. In vivo multidepth two-photon Ca2+ imaging of axons of early- and late-born GrCs revealed representations of diverse task variables and stimuli by both populations, with modest differences in the proportions encoding movement, reward anticipation, and reward consumption. Our results suggest neither organized parallel processing nor completely random organization of mossy fiber→GrC circuitry but instead a moderate influence of birth timing on GrC wiring and encoding. Our imaging data also provide evidence that GrCs can represent generalized responses to aversive stimuli, in addition to recently described reward representations.
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Affiliation(s)
- S Andrew Shuster
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
- Neurosciences Graduate Program, Stanford University, Stanford, CA 94305
| | - Mark J Wagner
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
| | - Nathan Pan-Doh
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
| | - Jing Ren
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
- Medical Research Council Laboratory of Molecular Biology, Cambridge University, Cambridge CB2 0QH, United Kingdom
| | - Sophie M Grutzner
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
| | - Kevin T Beier
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
- Department of Physiology and Biophysics, University of California, Irvine, CA 92697
| | - Tony Hyun Kim
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
- Department of Applied Physics, Stanford University, Stanford, CA 94305
| | - Mark J Schnitzer
- HHMI, Stanford University, Stanford, CA 94305
- Department of Biology, Stanford University, Stanford, CA 94305
- Department of Applied Physics, Stanford University, Stanford, CA 94305
| | - Liqun Luo
- HHMI, Stanford University, Stanford, CA 94305;
- Department of Biology, Stanford University, Stanford, CA 94305
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Rhee JK, Park H, Kim T, Yamamoto Y, Tanaka-Yamamoto K. Projection-dependent heterogeneity of cerebellar granule cell calcium responses. Mol Brain 2021; 14:63. [PMID: 33789707 PMCID: PMC8011397 DOI: 10.1186/s13041-021-00773-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 03/18/2021] [Indexed: 11/13/2022] Open
Abstract
Cerebellar granule cells (GCs) relay mossy fiber (MF) inputs to Purkinje cell dendrites via their axons, the parallel fibers (PFs), which are individually located at a given sublayer of the molecular layer (ML). Although a certain degree of heterogeneity among GCs has been recently reported, variability of GC responses to MF inputs has never been associated with their most notable structural variability, location of their projecting PFs in the ML. Here, we utilize an adeno-associated virus (AAV)-mediated labeling technique that enables us to categorize GCs according to the location of their PFs, and compare the Ca2+ responses to MF stimulations between three groups of GCs, consisting of either GCs having PFs at the deep (D-GCs), middle (M-GCs), or superficial (S-GCs) sublayer. Our structural analysis revealed that there was no correlation between position of GC soma in the GC layer and location of its PF in the ML, confirming that our AAV-mediated labeling was important to test the projection-dependent variability of the Ca2+ responses in GCs. We then found that the Ca2+ responses of D-GCs differed from those of M-GCs. Pharmacological experiments implied that the different Ca2+ responses were mainly attributable to varied distributions of GABAA receptors (GABAARs) at the synaptic and extrasynaptic regions of GC dendrites. In addition to GABAAR distributions, amounts of extrasynaptic NMDA receptors appear to be also varied, because Ca2+ responses were different between D-GCs and M-GCs when glutamate spillover was enhanced. Whereas the Ca2+ responses of S-GCs were mostly equivalent to those of D-GCs and M-GCs, the blockade of GABA uptake resulted in larger Ca2+ responses in S-GCs compared with D-GCs and M-GCs, implying existence of mechanisms leading to more excitability in S-GCs with increased GABA release. Thus, this study reveals MF stimulation-mediated non-uniform Ca2+ responses in the cerebellar GCs associated with the location of their PFs in the ML, and raises a possibility that combination of inherent functional variability of GCs and their specific axonal projection contributes to the information processing through the GCs.
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Affiliation(s)
- Jun Kyu Rhee
- Center for Functional Connectomics, Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.,Division of Bio-Medical Science and Technology, KIST School, Korea University of Science and Technology (UST), Seoul, 02792, Republic of Korea
| | - Heeyoun Park
- Center for Functional Connectomics, Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea
| | - Taegon Kim
- Center for Functional Connectomics, Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
| | - Yukio Yamamoto
- Center for Functional Connectomics, Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
| | - Keiko Tanaka-Yamamoto
- Center for Functional Connectomics, Brain Science Institute, Korea Institute of Science and Technology (KIST), Seoul, 02792, Republic of Korea.
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Commentary on "The Significance of the Granular Layer of the Cerebellum: a Communication by Heinrich Obersteiner (1847-1922) Before the 81st Meeting of the Society of German Natural Scientists and Physicians in Salzburg, September 1909". THE CEREBELLUM 2020; 20:321-326. [PMID: 32949344 DOI: 10.1007/s12311-020-01188-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
This commentary highlights a "cerebellar classic" by Heinrich Obersteiner (1847-1922), the founder of Vienna's Neurological Institute. Obersteiner had a long-standing interest in the cerebellar cortex, its development, and pathology, having provided one of the early accurate descriptions of the external germinal layer (sometimes called the "marginal zone of Obersteiner" or "Obersteiner layer"). In his communication before the 81st meeting of the Society of German Natural Scientists and Physicians in Salzburg in September 1909, Obersteiner placed special emphasis on the histophysiology of the granule cell layer of the cerebellum and covered most of the fundamental elements of the cerebellar circuitry, on the basis of Ramón y Cajal's neuronism. Those elements are discussed in a historic and a modern perspective, including some recent ideas about the role of granule cells, beyond the mere relay of sensorimotor information from mossy fibers to the Purkinje cells, in learning and cognition.
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Kawato M, Ohmae S, Hoang H, Sanger T. 50 Years Since the Marr, Ito, and Albus Models of the Cerebellum. Neuroscience 2020; 462:151-174. [PMID: 32599123 DOI: 10.1016/j.neuroscience.2020.06.019] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 06/10/2020] [Accepted: 06/15/2020] [Indexed: 12/18/2022]
Abstract
Fifty years have passed since David Marr, Masao Ito, and James Albus proposed seminal models of cerebellar functions. These models share the essential concept that parallel-fiber-Purkinje-cell synapses undergo plastic changes, guided by climbing-fiber activities during sensorimotor learning. However, they differ in several important respects, including holistic versus complementary roles of the cerebellum, pattern recognition versus control as computational objectives, potentiation versus depression of synaptic plasticity, teaching signals versus error signals transmitted by climbing-fibers, sparse expansion coding by granule cells, and cerebellar internal models. In this review, we evaluate different features of the three models based on recent computational and experimental studies. While acknowledging that the three models have greatly advanced our understanding of cerebellar control mechanisms in eye movements and classical conditioning, we propose a new direction for computational frameworks of the cerebellum, that is, hierarchical reinforcement learning with multiple internal models.
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Affiliation(s)
- Mitsuo Kawato
- Brain Information Communication Research Group, Advanced Telecommunications Research Institutes International (ATR), Hikaridai 2-2-2, "Keihanna Science City", Kyoto 619-0288, Japan; Center for Advanced Intelligence Project (AIP), RIKEN, Nihonbashi Mitsui Building, 1-4-1 Nihonbashi, Chuo-ku, Tokyo 103-0027, Japan.
| | - Shogo Ohmae
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas, USA
| | - Huu Hoang
- Brain Information Communication Research Group, Advanced Telecommunications Research Institutes International (ATR), Hikaridai 2-2-2, "Keihanna Science City", Kyoto 619-0288, Japan
| | - Terry Sanger
- Department of Electrical Engineering, University of California, Irvine, 4207 Engineering Hall, Irvine CA 92697-2625, USA; Children's Hospital of Orange County, 1201 W La Veta Ave, Orange, CA 92868, USA.
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Sanger TD, Yamashita O, Kawato M. Expansion coding and computation in the cerebellum: 50 years after the Marr–Albus codon theory. J Physiol 2020; 598:913-928. [DOI: 10.1113/jp278745] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 12/05/2019] [Indexed: 12/12/2022] Open
Affiliation(s)
- Terence D. Sanger
- Departments of Biomedical EngineeringNeurology, and BiokinesiologyUniversity of Southern California 1042 Downey Way, DRB 140 Los Angeles CA 90089 USA
| | - Okito Yamashita
- Brain Information Communication Research Laboratory GroupAdvanced Telecommunications Research Institutes International (ATR) Hikaridai 2‐2‐2, ‘Keihanna Science City’ Kyoto 619‐0288 Japan
- Center for Advanced Intelligence Project (AIP)RIKEN Nihonbashi 1‐chome Mitsui Building, 15th floor, 1‐4‐1 Nihonbashi Chuo‐ku Tokyo 103‐0027 Japan
| | - Mitsuo Kawato
- Brain Information Communication Research Laboratory GroupAdvanced Telecommunications Research Institutes International (ATR) Hikaridai 2‐2‐2, ‘Keihanna Science City’ Kyoto 619‐0288 Japan
- Center for Advanced Intelligence Project (AIP)RIKEN Nihonbashi 1‐chome Mitsui Building, 15th floor, 1‐4‐1 Nihonbashi Chuo‐ku Tokyo 103‐0027 Japan
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