The effect of size-dependent growth and environmental factors on animal size variability

Trophic niche partitioning and intraspecific variation in food resource use in the genus Pangasianodon in a reservoir revealed by stable isotope analysis of multiple tissues

Understanding the mechanism by which non-native fish species integrate into native communities is crucial for evaluating the possibility of their establishment success. The genus Pangasianodon, comprising Pangasianodon gigas and Pangasianodon hypophthalmus, has been introduced into reservoirs, which are non-native habitats, for fishery stock enhancement. P. gigas and P. hypophthalmus often successfully establish and co-occur in several Thai reservoirs, but there is little information on differences in food resource use between the two species. To investigate the trophic niche width of P. gigas and P. hypophthalmus in a Thai reservoir, we conducted stable carbon and nitrogen ratio (δ13C and δ15N) analyses. We examined the degree of individual specialization in both species using the δ13C and δ15N values of muscle and liver tissues, which provides long- and short-term diet information. The isotopic niches did not overlap between P. gigas and P. hypophthalmus. The δ15N value of P. gigas was significantly higher than that of P. hypophthalmus, whereas the δ13C value did not significantly differ between the two species. The isotopic niche sizes were larger in P. hypophthalmus than in P. gigas. Individual specialization was observed in P. hypophthalmus but not in P. gigas, indicating that intraspecific variation in food resource use was larger in P. hypophthalmus compared to P. gigas. These findings suggest that trophic niche partitioning was one of the factors facilitating the establishment success of P. gigas and P. hypophthalmus in a reservoir, but the establishment process may differ between the two species.

Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas

BACKGROUND

The Pacific oyster, Crassostrea gigas, is an economically important shellfish around the world. Great efforts have been made to improve its growth rate through genetic breeding. However, the candidate marker genes, pathways, and potential lncRNAs involved in oyster growth regulation remain largely unknown. To identify genes, lncRNAs, and pathways involved in growth regulation, C. gigas spat was cultured at a low temperature (15 ℃) to yield a growth-inhibited model, which was used to conduct comparative transcriptome analysis with spat cultured at normal temperature (25 ℃).

RESULTS

In total, 8627 differentially expressed genes (DEGs) and 1072 differentially expressed lncRNAs (DELs) were identified between the normal-growth oysters (cultured at 25 ℃, hereinafter referred to as NG) and slow-growth oysters (cultured at 15 ℃, hereinafter referred to as SG). Functional enrichment analysis showed that these DEGs were mostly enriched in the AMPK signaling pathway, MAPK signaling pathway, insulin signaling pathway, autophagy, apoptosis, calcium signaling pathway, and endocytosis process. LncRNAs analysis identified 265 cis-acting pairs and 618 trans-acting pairs that might participate in oyster growth regulation. The expression levels of LNC_001270, LNC_003322, LNC_011563, LNC_006260, and LNC_012905 were inducible to the culture temperature and food abundance. These lncRNAs were located at the antisense, upstream, or downstream of the SREBP1/p62, CDC42, CaM, FAS, and PIK3CA genes, respectively. Furthermore, the expression of the trans-acting lncRNAs, including XR_9000022.2, LNC_008019, LNC_015817, LNC_000838, LNC_00839, LNC_011859, LNC_007294, LNC_006429, XR_002198885.1, and XR_902224.2 was also significantly associated with the expression of genes enriched in AMPK signaling pathway, insulin signaling pathway, autophagy, apoptosis, calcium signaling pathway, and endocytosis process.

CONCLUSIONS

In this study, we identified the critical growth-related genes and lncRNAs that could be utilized as candidate markers to illustrate the molecular mechanisms underlying the growth regulation of Pacific oysters.

Fatter or stronger: Resource allocation strategy and the underlying metabolic mechanisms in amphibian tadpoles

The allocation of resources between storage and somatic growth is an essential physiological phenomenon in animals. Allocation mechanisms have broad theoretical and applied implications. The real-time resource allocation patterns in animals remain to be elucidated, and there is limited understanding of the metabolic mechanisms. We investigated the resource allocation strategy of Rana omeimontis tadpoles. Their ontogenetic fat accumulation began when body weight increased to 30-50 mg, at which time storage had a high priority in resource allocation. Beyond this weight range, somatic growth accelerated but storage investment was maintained, resulting in a positive correlation between body fat index and body weight at the population level. This pattern could be explained by assuming a positive relationship between storage abundance and growth investment, and this was supported by the prioritized increment of body fat to body weight when tadpoles were provided with increased food. At the metabolic level, hepatic fat accumulation was accompanied by upregulated utilization of fat storage, and the tadpoles presented lipid-based energy metabolism. Activating the mobilization of hepatic fat storage promoted somatic growth. In short, the liver is like a reservoir with valves that regulate energy flow for downstream developmental processes. These results provide novel mechanistic insights into resource allocation.

Effects of genetics and early-life mild hypoxia on size variation in farmed gilthead sea bream (Sparus aurata)

The present study evaluated, in an 18-month gilthead sea bream trial, the time course effects of genetics on individual size variation and growth compensation processes in families selected by heritable growth in the PROGENSA^® breeding program. Families categorized as fast, intermediate, and slow growing had different growth trajectories with a more continuous growth in fast growth families. This feature was coincident with a reduced size variation at the beginning of the trial that clustered together the half-sib families sharing the same father. Regression analysis evidenced that the magnitude of compensatory growth was proportional to the initial size variation with no rescaling of families at this stage. By contrast, the finishing growth depensation process can mask, at least partially, the previous size convergence. This reflects the different contribution across the production cycle of genetics in growth. How early-life experiences affect growth compensation at juvenile stages was also evaluated in a separate cohort, and intriguingly, a first mild-hypoxia pulse at 60-81 days post-hatching (dph) increased survival rates by 10%, preventing growth impairment when fish were exposed to a second hypoxia episode (112-127 dph). The early hypoxia experience did not have a negative impact on growth compensatory processes at juvenile stages. By contrast, a diminished capacity for growth compensation was found with repeated or late hypoxia experiences. All this reinforces the use of size variation as a main criterion for improving intensive fish farming and selective breeding.

Growth, developmental, and size structure responses in tadpole prey under increasing threat from gape-limited newts

Size variability within a cohort can have profound effects on community ecology and evolution. Although competition for resources generally increases size variability, the effect of (non-consumptive) predation on this demographic trait remains relatively poorly understood. Existing models suggest a positive correlation between growth rate (mediated by resource level) and expression of size variability (as measured by the coefficient of variation) in prey cohorts. We tested this prediction by exposing the tadpoles of the Japanese Forest Green Treefrog (Rhacophorus arboreus (Okada and Kawano, 1924) = Zhangixalus arboreus (Okada and Kawano, 1924)) to the non-lethal presence of gape-limited Japanese Fire-bellied Newts (Cynops pyrrhogaster (Boie, 1826)) at low and high predator densities in an outdoor mesocosm experiment. Tadpole growth rates and periphyton biomass increased with newt density. But in contrast to prediction, elevated growth rates did not increase but, reversely, decreased cohort size variability in the tadpoles. We discuss two potential mechanisms behind this outcome. First, increased resource availability mediated by predator feeding may have reduced the strength of competition, ultimately leading to more evenly distributed resource gains among individuals; second, if smaller individuals grew relatively faster than larger individuals, as to quicken entry to a size refuge against the gape-limited predator, then inter-individual size differences could diminish over time.

Is bigger really better? Relative and absolute body size influence individual growth rate under competition

Models suggest that the mechanism of competition can influence the growth advantage associated with being large (in absolute body size or relative to other individuals in the population). Large size is advantageous under interference, but disadvantageous under exploitative competition. We addressed this prediction in a laboratory experiment on Rana temporaria tadpoles competing for limited food. There were 166 target individuals spanning a 10‐fold range in body mass reared for 3 days with three other individuals that were either the same size, half as large, or twice as large as the target. Relative growth rate (proportion per day) declined with size, and absolute growth rate (mass per day) reached a peak at intermediate size and declined thereafter. Tadpoles grew slowly if they were large relative to their competitors, although relative body size was less important than absolute size. As a result, size variation declined in groups that were initially composed of individuals of variable size. Thus, bigger was not better under exploitative competition. Our results help connect individual‐level behavior with individual growth and the size distribution of the population.

Resource competition induces heterogeneity and can increase cohort survivorship: selection-event duration matters

Determining when resource competition increases survivorship can reveal processes underlying population dynamics and reinforce the importance of heterogeneity among individuals in conservation. We ran an experiment mimicking the effects of competition in a growing season on survivorship during a selection event (e.g., overwinter starvation, drought). Using a model fish species (Poecilia reticulata), we studied how food availability and competition affect mass in a treatment stage, and subsequently survivorship in a challenge stage of increased temperature and starvation. The post-treatment mean mass was strongly related to the mean time to mortality and mass at mortality at all levels of competition. However, competition increased variance in mass and extended the right tail of the survivorship curve, resulting in a greater number of individuals alive beyond a critical temporal threshold ([Formula: see text]) than without competition. To realize the benefits from previously experienced competition, the duration of the challenge ([Formula: see text]) following the competition must exceed the critical threshold [Formula: see text] (i.e., competition increases survivorship when [Formula: see text]). Furthermore, this benefit was equivalent to increasing food availability by 20 % in a group without competition in our experiment. The relationship of [Formula: see text] to treatment and challenge conditions was modeled by characterizing mortality through mass loss in terms of the stochastic rate of loss of vitality (individual's survival capacity). In essence, when the duration of a selection event exceeds [Formula: see text], competition-induced heterogeneity buffers against mortality through overcompensation processes among individuals of a cohort. Overall, our study demonstrates an approach to quantify how early life stage heterogeneity affects survivorship.

Effects of size and size structure on predation and inter-cohort competition in red-eyed treefrog tadpoles

Individual and relative body size are key determinants of ecological performance, shaping the strength and types of interactions within and among species. Size-dependent performance is particularly important for iteroparous species with overlapping cohorts, determining the ability of new cohorts to invade habitats with older, larger conspecifics. We conducted two mesocosm experiments to examine the role of size and size structure in shaping growth and survival in tadpoles of the red-eyed treefrog (Agalychnis callidryas), a tropical species with a prolonged breeding season. First, we used a response surface design to quantify the competitive effect and response of two tadpole size classes across three competitive environments. Large tadpoles were superior per capita effect competitors, increasing the size difference between cohorts through time at high resource availability. Hatchlings were better per biomass response competitors, and maintained the size difference between cohorts when resource availability was low. However, in contrast to previous studies, small tadpoles never closed the size gap with large tadpoles. Second, we examine the relationship between body size, size structure, and predation by dragonfly nymphs (Anax amazili) on tadpole survival and growth. Hatchlings were more vulnerable to predation; predator and large competitor presence interacted to reduce hatchling growth. Again, the size gap between cohorts increased over time, but increased marginally more with predators present. These findings have implications for understanding how variation in resources and predation over the breeding season will shape population size structure through time and the ability of new cohorts to invade habitats with older conspecifics.

Stage-structured matrix models for organisms with non-geometric development times

Matrix models have been used to model population growth of organisms for many decades. They are popular because of both their conceptual simplicity and their computational efficiency. For some types of organisms they are relatively accurate in predicting population growth; however, for others the matrix approach does not adequately model growth rate. One of the reasons for the lack of accuracy is that most matrix-based models implicitly assume a specific degree of variability in development times for the organism. Because the variability is implicit, the implied variances are often not verified with experimental data. In this paper, we shall present extensions to the stage-classified matrix models so that organisms with arbitrary means and standard deviations of development times can be modeled.

Mechanisms of nonlethal predator effect on cohort size variation: ecological and evolutionary implications

Understanding the factors responsible for generating size variation in cohorts of organisms is important for predicting their population and evolutionary dynamics. We group these factors into two broad classes: those due to scaling relationships between growth and size (size-dependent factors), and those due to individual trait differences other than size (size-independent factors; e.g., morphology, behavior, etc.). We develop a framework predicting that the nonlethal presence of predators can have a strong effect on size variation, the magnitude and sign of which depend on the relative influence of both factors. We present experimental results showing that size-independent factors can strongly contribute to size variation in anuran larvae, and that the presence of a larval dragonfly predator reduced expression of these size-independent factors. Further, a review of a number of experiments shows that the effect of this predator on relative size variation of a cohort ranged from negative at low growth rates to positive at high growth rates. At high growth rates, effects of size-dependent factors predominate, and predator presence causes an increase in the scaling of growth rate with size (larger individuals respond less strongly to predator presence than small individuals). Thus predator presence led to an increase in size variation. In contrast, at low growth rates, size-independent factors were relatively more important, and predator presence reduced expression of these size-independent factors. Consequently, predator presence led to a decrease in size variation. Our results therefore indicate a further mechanism whereby nonlethal predator effects can be manifest on prey species performance. These results have strong implications for both ecological and evolutionary processes. Theoretical studies indicate that changes in cohort size variation can have profound effects on population dynamics and stability, and therefore the mere presence of a predator could have important ecological consequences. Further, changes in cohort size variation can have important evolutionary implications through changes in trait heritability.