STXM goes 3D: Digital reconstruction of focal stacks as novel approach towards confocal soft x-ray microscopy

Electrically addressed focal stack plenoptic camera based on a liquid-crystal microlens array for all-in-focus imaging

Focal stack cameras are capable of capturing a stack of images focused at different spatial distance, which can be further integrated to present a depth of field (DoF) effect beyond the range restriction of conventional camera's optics. To date, all of the proposed focal stack cameras are essentially 2D imaging architecture to shape 2D focal stacks with several selected focal lengths corresponding to limited objective distance range. In this paper, a new type of electrically addressed focal stack plenoptic camera (EAFSPC) based on a functional liquid-crystal microlens array for all-in-focus imaging is proposed. As a 3D focal stack camera, a sequence of raw light-field images can be rapidly manipulated through rapidly shaping a 3D focal stack. The electrically addressed focal stack strategy relies on the electric tuning of the focal length of the liquid-crystal microlens array by efficiently selecting or adjusting or jumping the signal voltage applied over the microlenses. An algorithm based on the Laplacian operator is utilized to composite the electrically addressed focal stack leading to raw light-field images with an extended DoF and then the all-in-focus refocused images. The proposed strategy does not require any macroscopic movement of the optical apparatus, so as to thoroughly avoid the registration of different image sequence. Experiments demonstrate that the DoF of the refocused images can be significantly extended into the entire tomography depth of the EAFSPC, which means a significant step for an all-in-focus imaging based on the electrically controlled 3D focal stack. Moreover, the proposed approach also establishes a high correlation between the voltage signal and the depth of in-focus plane, so as to construct a technical basis for a new type of 3D light-field imaging with an obvious intelligent feature.

Virtual depth-scan multi-slice ptychography for improved three-dimensional imaging

Multi-slice ptychography (MSP) is a fast three-dimensional ptychography technology developed on the basis of conventional ptychography. With this method, three-dimensional imaging can be achieved without rotating the sample. The prototype multi-slice algorithm can only reconstruct three-dimensional samples with a limited number of slices, which greatly limits the depth range and resolution of sample imaging. Here we reported a virtual depth-scan scheme of MSP in which a thick sample is scanned virtually in the depth direction across its whole thickness range within the reconstruction process, thereby eliminating the restriction on slice number and potentially improving the depth resolution of MSP. This new approach also improves the flexibility of multi-slice ptychography. Both the simulation and experimental results validate the feasibility of our new approach.

From 2D STXM to 3D Imaging: Soft X-ray Laminography of Thin Specimens

X-ray tomography has become an indispensable tool for studying complex 3D interior structures with high spatial resolution. Three-dimensional imaging using soft X-rays offers powerful contrast mechanisms but has seen limited success with tomography due to the restrictions imposed by the much lower energy of the probe beam. The generalized geometry of laminography, characterized by a tilted axis of rotation, provides nm-scale 3D resolution for the investigation of extended (mm range) but thin (μm to nm) samples that are well suited to soft X-ray studies. This work reports on the implementation of soft X-ray laminography (SoXL) at the scanning transmission X-ray spectromicroscope of the PolLux beamline at the Swiss Light Source, Paul Scherrer Institut, which enables 3D imaging of extended specimens from 270 to 1500 eV. Soft X-ray imaging provides contrast mechanisms for both chemical sensitivity to molecular bonds and oxidation states and magnetic dichroism due to the much stronger attenuation of X-rays in this energy range. The presented examples of applications range from functionalized nanomaterials to biological photonic crystals and sophisticated nanoscaled magnetic domain patterns, thus illustrating the wide fields of research that can benefit from SoXL.

Additive Nano-Lithography with Focused Soft X-rays: Basics, Challenges, and Opportunities

Focused soft X-ray beam induced deposition (FXBID) is a novel technique for direct-write nanofabrication of metallic nanostructures from metal organic precursor gases. It combines the established concepts of focused electron beam induced processing (FEBIP) and X-ray lithography (XRL). The present setup is based on a scanning transmission X-ray microscope (STXM) equipped with a gas flow cell to provide metal organic precursor molecules towards the intended deposition zone. Fundamentals of X-ray microscopy instrumentation and X-ray radiation chemistry relevant for FXBID development are presented in a comprehensive form. Recently published proof-of-concept studies on initial experiments on FXBID nanolithography are reviewed for an overview on current progress and proposed advances of nanofabrication performance. Potential applications and advantages of FXBID are discussed with respect to competing electron/ion based techniques.

A method of z-tomography using high-aperture soft X-ray microscopy

Multilayer normal-incidence mirrors allow the numerical aperture (NA=0.3-0.5) of a projection lens to be significantly increased in the spectral ranges of the water (λ = 2.3-4.4 nm) and carbon (λ = 4.4-7 nm) windows, in comparison with the Fresnel zone plates. The low depth of focus of high-aperture optics (tens of nm) makes it possible to use z-tomography to reconstruct the structure of samples in soft X-ray microscopy. The presence of strong absorption prevents the direct use of a powerful deconvolution apparatus developed for fluorescence optical microscopy to improve the clarity of the image. In this article, the "intensity restoration algorithm" is proposed that takes into account the absorption effect before standard deconvolution. For an imagine lens with NA = 0.3 and a working wavelength of 3.37 nm, the results of simulating an image of a protein cell and its deconvolutionary processing are presented, before and after applying the proposed method. After its application, the deconvolution efficiency is significantly increased. A "full-period" resolution of 40 nm was obtained for the image of a simulated protein cell.

Three-dimensional focal stack imaging in scanning transmission X-ray microscopy with an improved reconstruction algorithm

Focal stack (FS) is an effective technique for fast 3D imaging in high-resolution scanning transmission X-ray microscopy. Its crucial issue is to assign each object within the sample to the correct position along the optical axis according to a proper focus measure. There is probably information loss with previous algorithms for FS reconstruction because the old algorithms can only detect one focused object along each optical-axial pixel line (OAPL). In this study, we present an improved FS algorithm, which utilizes an elaborately calculated threshold for normalized local variances to extract multiple focused objects in each OAPL. Simulation and experimental results show its feasibility and high efficiency for 3D imaging of high contrast, sparse samples. It is expected that our advanced approach has potential applications in 3D X-ray microscopy for more complex samples.

Imaging the Microprocesses in Biofilm Matrices

Biofilms, which are aggregates of microorganisms and extracellular matrices, widely colonize natural water bodies, wastewater treatment systems, and body tissues, and have vital roles in water purification, biofouling, and infectious diseases. Recently, multiple imaging modalities have been developed to visualize the morphological structure and material distribution within biofilms and to probe the microprocesses in biofilm matrices, including biofilm formation, transfer and metabolism of substrates, and cell-cell communication. These technologies have improved our understanding of biofilm control and the fates of substrates in biofilms. In this review, we describe the principles of various imaging techniques and discuss the advantages and limitations of each approach to characterizing microprocesses in biofilm matrices.

Quantitative X-ray microscopic analysis of individual thermoresponsive microgel particles in aqueous solution

The temperature dependent phase transition of individual thermoresponsive microgel particles in aqueous solution has been studied by high resolution soft X-ray transmission microscopy (STXM).

Enhanced mechanical properties of PLA/PLAE blends via well-dispersed and compatilized nanostructures in the matrix

The mechanical properties of PLA are significantly enhanced by the well-dispersed and compatilized nanostructures in the matrix of PLA/PLAE blends.

Comparison of bone regeneration in alveolar bone of dogs on mineralized collagen grafts with two composition ratios of nano-hydroxyapatite and collagen

To study the effect of two composition ratios of nano-hydroxyapatite and collagen (NHAC) composites on repairing alveolar bone defect of dogs. Eighteen healthy adult dogs were randomly divided into three groups. Two kinds of the NHAC composites were prepared according to the constituent ratios of 3:7 and 5:5; immediately after extraction of the mandibular second premolars, each kind of the NHAC composite was implanted into extraction socket, respectively: Group I, nHA/Col = 3:7; Group II, nHA/Col = 5:5 and Group III, blank control group. The bone-repairing ability of the two grafts was separately analyzed by morphometric measurement, X-ray tomography examination and biomechanical analysis at 1st, 3rd and 6th month post-surgical, respectively. The NHAC composites were absorbed gradually after implanting into alveolar bone defect and were replaced by new bone. The ratios of new bone formation of Group I was significantly higher than that of Group II after 3 months (P < 0.05). The structure and bioactive performance can be improved when the ratio between the collagen and the hydroxyapatite was reasonable, and the repairing ability and effect in extraction sockets are obviously better.