Rapid, easy and reliable calibration for freehand 3D ultrasound

A Gel Pad Designed to Measure Muscle Volume Using Freehand 3-Dimensional Ultrasonography

We developed an innovative gel pad that covers the entire lower leg to remove artifacts due to the pressure of the transducer in freehand 3-dimensional ultrasonography. In comparison to the reference method in water, this study showed that this new method was valid (bias, 3.4 mL; limit of agreement, 7.7 mL for a volume of ≈220 mL) and reliable (coefficient of variation, <1.1%) for the measurement of gastrocnemius medialis muscle volume. Considering that it is easier to use than the water tank technique, it has much promise for volumetric measurement of many muscles.

Efficient image based method using water-filled balloons for improving probe spatial calibration in 3D freehand ultrasonography

The ultrasound (US) probe spatial calibration is a key prerequisite for enabling the use of the 3D freehand US technique. Several methods have been proposed for achieving an accurate and precise calibration, although these methods still require specialised equipment. This equipment is often not available in research or clinical facilities. Therefore, the present investigation aimed to propose an efficient US probe calibration method that is accessible in terms of cost, easy to apply and capable of achieving results suitable for clinical applications. The data acquisition was carried out by performing two perpendicular US sweeps over water filled balloon phantoms. The data analysis was carried out by computing the similarity measures between 2D images from the first sweep and the corresponding images of the 3D reconstruction of the second sweep. These measures were maximized by using the Nelder-Mead algorithm, to find the optimal solution for the calibration parameters. The calibration results were evaluated in terms of accuracy and precision by comparing known phantom geometries with those extracted from the US images. The accuracy and the precision after applying the calibration method were improved. By using the parameters obtained from the plane phantom method as initialization of the calibration parameters, the accuracy and the precision in the best scenario was 0.4 mm and 1.5 mm, respectively. These results were in line with the methods requiring specialised equipment. However, the applied method was unable to consistently produce this level of accuracy and precision. The calibration parameters were also tested in a musculoskeletal application, revealing sufficient matching of the relevant anatomical features when multiple US sweeps are combined in a 3D reconstruction. To improve the current results and increase the reproducibility of this research, the developed software is made available.

Low-cost Volumetric Ultrasound by Augmentation of 2D Systems: Design and Prototype

Conventional two-dimensional (2D) ultrasound imaging is a powerful diagnostic tool in the hands of an experienced user, yet 2D ultrasound remains clinically underutilized and inherently incomplete, with output being very operator dependent. Volumetric ultrasound systems can more fully capture a three-dimensional (3D) region of interest, but current 3D systems require specialized transducers, are prohibitively expensive for many clinical departments, and do not register image orientation with respect to the patient; these systems are designed to provide improved workflow rather than operator independence. This work investigates whether it is possible to add volumetric 3D imaging capability to existing 2D ultrasound systems at minimal cost, providing a practical means of reducing operator dependence in ultrasound. In this paper, we present a low-cost method to make 2D ultrasound systems capable of quality volumetric image acquisition: we present the general system design and image acquisition method, including the use of a probe-mounted orientation sensor, a simple probe fixture prototype, and an offline volume reconstruction technique. We demonstrate initial results of the method, implemented using a Verasonics Vantage research scanner.

The reliability and validity of a clinical 3D freehand ultrasound system

BACKGROUND AND OBJECTIVE

Acquiring large anatomical volumes in a feasible manner is useful for clinical decision-making. A relatively new technique called 3D freehand ultrasonography is capable of this by combining a conventional 2D ultrasonography system. Currently, a thorough analysis of this technique is lacking, as the analyses are dependent on the software implementation details and the choice of measurement systems. Therefore this study starts by making this implementation available under the form of an open-source software library to perform 3D freehand ultrasonography. Following that, reliability and validity analyses of extracting volumes and lengths will be carried out using two independent motion-tracking systems.

METHODS

A PC-based ultrasonography device and two optical motion-tracking systems were used for data acquisition. An in-house software library called Py3DFreeHandUS was developed to reconstruct (off-line) the corresponding data into one 3D data set. Reliability and validity analyses of the entire experimental set-up were performed by estimating the volumes and lengths of ground truth objects. Ten water-filled balloons and six cross-wires were used. Repeat measurements were also performed by two experienced operators.

RESULTS

The software library Py3DFreeHandUS is available online, along with the relevant documentation. The reliability analyses showed high intra- and inter-operator intra-class correlation coefficient results for both volumes and lengths. The accuracy analysis revealed a discrepancy in all cases of around 3%, which corresponded to 3 ml and 1 mm for volume and length measurements, respectively. Similar results were found for both of the motion-tracking systems.

CONCLUSIONS

The undertaken analyses for estimating volume and lengths acquired with 3D freehand ultrasonography demonstrated reliable design measurements and suitable performance for applications that do not require sub-mm and -ml accuracy.

First Steps Toward Ultrasound-Based Motion Compensation for Imaging and Therapy: Calibration with an Optical System and 4D PET Imaging

Target motion, particularly in the abdomen, due to respiration or patient movement is still a challenge in many diagnostic and therapeutic processes. Hence, methods to detect and compensate this motion are required. Diagnostic ultrasound (US) represents a non-invasive and dose-free alternative to fluoroscopy, providing more information about internal target motion than respiration belt or optical tracking. The goal of this project is to develop an US-based motion tracking for real-time motion correction in radiation therapy and diagnostic imaging, notably in 4D positron emission tomography (PET). In this work, a workflow is established to enable the transformation of US tracking data to the coordinates of the treatment delivery or imaging system – even if the US probe is moving due to respiration. It is shown that the US tracking signal is equally adequate for 4D PET image reconstruction as the clinically used respiration belt and provides additional opportunities in this concern. Furthermore, it is demonstrated that the US probe being within the PET field of view generally has no relevant influence on the image quality. The accuracy and precision of all the steps in the calibration workflow for US tracking-based 4D PET imaging are found to be in an acceptable range for clinical implementation. Eventually, we show in vitro that an US-based motion tracking in absolute room coordinates with a moving US transducer is feasible.

Automatic extraction of bone surfaces from 3D ultrasound images in orthopaedic trauma cases

PURPOSE

3D ultrasound (US) imaging has the potential to become a powerful alternative imaging modality in orthopaedic surgery as it is radiation-free and can produce 3D images (in contrast to fluoroscopy) in near-real time. Conventional B-mode US images, however, are characterized by high levels of noise and reverberation artifacts, image quality is user-dependent, and bone surfaces are blurred, which makes it difficult to both interpret images and to use them as a basis for navigated interventions. 3D US has great potential to assist orthopaedic care, possibly assisting during surgery if the anatomical structures of interest could be localized and visualized with sufficient accuracy and clarity and in a highly automated rapid manner.

METHODS

In this paper, we present clinical results for a novel 3D US segmentation technique we have recently developed based on multi-resolution analysis to localize bone surfaces in 3D US volumes. Our method is validated on scans obtained from 29 trauma patients with distal radius and pelvic ring fractures.

RESULTS

Qualitative and quantitative results demonstrate remarkably clear segmentations of bone surfaces with an average surface fitting error of 0.62 mm (standard deviation (SD) of 0.42 mm) for pelvic patients and 0.21 mm (SD 0.14 mm) for distal radius patients.

CONCLUSIONS

These results suggest that our technique is sufficiently accurate for potential use in orthopaedic trauma applications.

In vivo measurement of human achilles tendon morphology using freehand 3-D ultrasound

This study investigated the accuracy of phantom volume and length measurements and the reliability of in vivo Achilles tendon (AT) volume, length and cross-sectional area measurements obtained using freehand 3-D ultrasound. Participants (n = 13) were scanned on consecutive days under active and passive loading conditions. In vivo AT length was evaluated using a two-point method and an approach that accounted for AT curvature (centroid method). Three-dimensional ultrasound provided accurate measures of phantom volume and length (mean difference = 0.05 mL and 0.2 mm, respectively) and reliable in vivo measures of AT volume, length and average cross-sectional area, with all intra-class correlations coefficients greater than 0.98. The mean minimally detectable changes for in vivo AT volume, two-point length and centroid length were 0.2 mL, 1.5 mm and 2.0 mm, respectively. Two-point AT length underestimated centroid AT length by 0.7 mm, suggesting that the effect of curvature on in vivo AT length is negligible.

Automatic 3D ultrasound calibration for image guided therapy using intramodality image registration

Many real time ultrasound (US) guided therapies can benefit from management of motion-induced anatomical changes with respect to a previously acquired computerized anatomy model. Spatial calibration is a prerequisite to transforming US image information to the reference frame of the anatomy model. We present a new method for calibrating 3D US volumes using intramodality image registration, derived from the 'hand-eye' calibration technique. The method is fully automated by implementing data rejection based on sensor displacements, automatic registration over overlapping image regions, and a self-consistency error metric evaluated continuously during calibration. We also present a novel method for validating US calibrations based on measurement of physical phantom displacements within US images. Both calibration and validation can be performed on arbitrary phantoms. Results indicate that normalized mutual information and localized cross correlation produce the most accurate 3D US registrations for calibration. Volumetric image alignment is more accurate and reproducible than point selection for validating the calibrations, yielding <1.5 mm root mean square error, a significant improvement relative to previously reported hand-eye US calibration results. Comparison of two different phantoms for calibration and for validation revealed significant differences for validation (p = 0.003) but not for calibration (p = 0.795).

Automatic bone localization and fracture detection from volumetric ultrasound images using 3-D local phase features

This article presents a novel method for bone segmentation from three-dimensional (3-D) ultrasound images that derives intensity-invariant 3-D local image phase measures that are then employed for extracting ridge-like features similar to those that occur at soft tissue/bone interfaces. The main contributions in this article include: (1) the extension of our previously proposed phase-symmetry-based bone surface extraction from two-dimensional (2-D) to 3-D images using 3-D Log-Gabor filters; (2) the design of a new framework for accuracy evaluation based on using computed tomography as a gold standard that allows the assessment of surface localization accuracy across the entire 3-D surface; (3) the quantitative validation of accuracy of our 3-D phase-processing approach on both intact and fractured bone surfaces using phantoms and ex vivo 3-D ultrasound scans; and (4) the qualitative validation obtained by scanning emergency room patients with distal radius and pelvis fractures. We show a 41% improvement in surface localization error over the previous 2-D phase symmetry method. The results demonstrate clearly visible segmentations of bone surfaces with a localization accuracy of <0.6 mm and mean errors in estimating fracture displacements below 0.6 mm. The results show that the proposed method is successful even for situations when the bone surface response is weak due to shadowing from muscle and fascia interfaces above the bone, which is a situation where the 2-D method fails.

3D freehand ultrasound for in vivo determination of human skeletal muscle volume

Skeletal muscle volume is an important indicator of muscle function. Three-dimensional (3D) freehand ultrasound provides a noninvasive method for determining muscle volume and is acquired using a standard clinical ultrasound machine and an external tracking system to monitor transducer position. Eleven healthy volunteers were scanned with a 3D freehand system that uses an optical tracking device. Interest was concentrated on one of the muscles of the quadriceps group, rectus femoris and volume measurements performed on 30 mm cross-sections were compared with measurements derived from magnetic resonance imaging. Measured muscle volumes ranged from 5 cm(3) to 28 cm(3). The mean difference between measurements from 3D freehand ultrasound and magnetic resonance was 0.53 cm(3) with 95% limits of agreement of +/-2.14 cm(3). Muscle volume measurements obtained using 3D ultrasound were within +/-16% of the corresponding value from magnetic resonance imaging. We have shown for the first time that 3D freehand ultrasound can be used to determine human skeletal muscle volume accurately in vivo.

Magneto-optical tracking of flexible laparoscopic ultrasound: model-based online detection and correction of magnetic tracking errors

Electromagnetic tracking is currently one of the most promising means of localizing flexible endoscopic instruments such as flexible laparoscopic ultrasound transducers. However, electromagnetic tracking is also susceptible to interference from ferromagnetic material, which distorts the magnetic field and leads to tracking errors. This paper presents new methods for real-time online detection and reduction of dynamic electromagnetic tracking errors when localizing a flexible laparoscopic ultrasound transducer. We use a hybrid tracking setup to combine optical tracking of the transducer shaft and electromagnetic tracking of the flexible transducer tip. A novel approach of modeling the poses of the transducer tip in relation to the transducer shaft allows us to reliably detect and significantly reduce electromagnetic tracking errors. For detecting errors of more than 5 mm, we achieved a sensitivity and specificity of 91% and 93%, respectively. Initial 3-D rms error of 6.91 mm were reduced to 3.15 mm.

Comparison of freehand 3-D ultrasound calibration techniques using a stylus

In a freehand 3-D ultrasound system, a probe calibration is required to find the rigid body transformation from the corner of the B-scan to the electrical center of the position sensor. The most intuitive way to perform such a calibration is by locating fiducial points in the scan plane directly with a stylus. The main problem of this approach is the difficulty in aligning the tip of the stylus with the scan plane. The thick beamwidth makes the tip of the stylus visible in the B-scan, even if the tip is not exactly at the elevational center of the scan plane. We present a novel stylus and phantom that simplify the alignment process for more accurate probe calibration. We also compare our calibration techniques with a range of styli. We show that our stylus and cone phantom are both simple in design and can achieve a point reconstruction accuracy of 2.2 mm and 1.8 mm, respectively, an improvement from 3.2 mm and 3.6 mm with the sharp and spherical stylus. The performance of our cone stylus and phantom lie between the state-of-the-art Z-phantom and Cambridge phantom, where accuracies of 2.5 mm and 1.7 mm are achieved.

Real-time freehand 3D ultrasound calibration

Z-fiducial phantoms allow three-dimensional ultrasound probe calibration with a single B-scan. One of the main difficulties in using this phantom is the need for reliable segmentation of the wires in the ultrasound images, which necessitates manual intervention. In this article, we have shown how we can solve this problem by mounting a thin rubber membrane on top of the phantom. The membrane is segmented automatically and the wires can be easily located as they are at known positions relative to the membrane. This enables us to segment the wires automatically at the full PAL frame rate of 25 Hz, to produce calibrations in real-time, while achieving accuracies similar to those reported in the literature. We have also devised a technique to improve the estimation of the elevational offset (calibration parameter) by capturing a few images of the planar membrane. If spatial calibration is known, fully automatic wire segmentation allows the fiducials to be tracked in real-time. This also enables temporal calibration to be performed in real-time as the probe is moved away from the phantom. We have evaluated the performance of our phantom by calibrating a probe at 8 cm and 15 cm depth. The precision of the calibrations are 0.7 mm and 1.2 mm, respectively. The point reconstruction accuracies of fiducial points provided by the same Z-phantom are slightly below 1.5 mm. The point reconstruction accuracies obtained by scanning the end of a wire tip are 2.5 mm and 3.0 mm. These results match the accuracies achieved in the literature. It takes approximately 2 min to set up the experiment, submerge the phantom in the water bath, locate the phantom in space with a pointer and capture six images of the planar membrane. After this, spatial calibration can be performed in less than a second. Temporal calibration can be completed in approximately 3 s.

Calibration of an orientation sensor for freehand 3D ultrasound and its use in a hybrid acquisition system

BACKGROUND

Freehand 3D ultrasound is a powerful imaging modality with many potential applications. However, its reliance on add-on position sensors, which can be expensive, obtrusive and difficult to calibrate, is a major drawback. Alternatively, freehand 3D ultrasound can be acquired without a position sensor using image-based techniques. Sensorless reconstructions exhibit good fine scale detail but are prone to tracking drift, resulting in large scale geometrical distortions.

METHOD

We investigate an alternative position sensor, the Xsens MT9-B, which is relatively unobtrusive but measures orientation only. We describe a straightforward approach to calibrating the sensor, and we measure the calibration precision (by repeated calibrations) and the orientation accuracy (using independent orientation measurements). We introduce algorithms that allow the MT9-B potentially to correct both linear and angular drift in sensorless reconstructions.

RESULTS

The MT9-B can be calibrated to a precision of around 1 degrees . Reconstruction accuracy is also around 1 degrees . The MT9-B was able to eliminate angular drift in sensorless reconstructions, though it had little impact on linear drift. In comparison, six degree-of-freedom drift correction was shown to produce excellent reconstructions.

CONCLUSION

Gold standard freehand 3D ultrasound acquisition requires the synthesis of image-based techniques, for good fine scale detail, and position sensors, for good large scale geometrical accuracy. A hybrid system incorporating the MT9-B offers an attractive compromise between quality and ease of use. The position sensor is unobtrusive and the system is capable of faithful acquisition, with the one exception of linear drift in the elevational direction.

Computer-assisted navigation applied to fetal cardiac intervention

BACKGROUND

Prenatal cardiac interventions (PCI) for human fetal aortic valve (AoV) stenosis can reduce left ventricular hypoplasia and restore ventricular growth and function. However, 'freehand' needle delivery from the maternal skin through the uterine wall, fetal chest and ventricular apex to cross the fetal AoV remains technically challenging and time intensive, and is the rate-limiting step in the procedure.

METHODS

We developed a computer-assisted navigation (CANav) system that tracks the position and orientation of a two-dimensional (2D) ultrasound image relative to the trajectory of an electromagnetic (EM) embedded needle and stylet. We tested the CANav system in vitro using a water bath phantom, then in vivo using adult rats and pregnant (fetal) sheep.

RESULTS

The CANav system accurately tracked the delivered needle position in both in vitro phantom and adult rat model experiments. We performed 22 PCI attempts with or without CANav in a fetal sheep model. Maternal laparotomy was required to adjust the fetal position in 50% of the procedures. The time required to deliver the needle from the skin into the left ventricle (LV) using CANav was 2.9 +/- 1.7 (range 2-7) min (n = 14) vs. 5.5 +/- 4.3 (range 1-12) min (n = 8) without CANav (p < 0.05). The time needed to cross the aortic valve once the needle was within the LV was similar with and without CANav (p = 0.19).

CONCLUSIONS

CANav reduces the PCI time required to accurately deliver a needle to the fetal heart. Adaptations of this technical approach may be relevant to other congenital cardiac conditions and ultrasound-guided medical procedures.