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Jalali M, Behnam H. Speckle Tracking Accuracy Enhancement by Temporal Super-Resolution of Three-Dimensional Echocardiography Images. JOURNAL OF MEDICAL SIGNALS & SENSORS 2021; 11:177-184. [PMID: 34466397 PMCID: PMC8382030 DOI: 10.4103/jmss.jmss_26_20] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 05/30/2020] [Accepted: 08/27/2020] [Indexed: 11/04/2022]
Abstract
Background: Speckle tracking has always been a challenging issue in echocardiography images due to the lowcontrast and noisy nature of ultrasonic imaging modality. While in ultrasound imaging, framerate is limited by image size and sound speed in tissue, speckle tracking results get worse inthree-dimensional imaging due to its lower frame rate. Therefore, numerous techniques have beenreported to overcome this limitation and enhance tracking accuracy. Methods: In this work, we have proposedto increase the frame rate temporally for a sequence of three-dimensional (3D) echocardiographyframes to make tracking more accurate. To increase the number of frames, cubic B-spline is usedto interpolate between intensity variation time curves extracted from every single voxel in theimage during the cardiac cycle. We have shown that the frame rate increase will result in trackingaccuracy improvement. Results: To prove the efficiency of the proposed method, numerical evaluation metricsfor tracking are reported to make a comparison between high temporal resolution sequences andlow temporal resolution sequences. Anatomical affine optical flow is selected as the state-of-the-artspeckle tracking method, and a 3D echocardiography dataset is used to evaluate the proposedmethod. Conclusion: Results show that it is beneficial for speckle tracking to perform on temporally condensedframes rather than ordinary clinical 3D echocardiography images. Normalized mean enhancementvalues for mean absolute error, Hausdorff distance, and Dice index for all cases and all frames are0.44 ± 0.09, 0.42± 0.09, and 0.36 ± 0.06, respectively.
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Affiliation(s)
- Mohammad Jalali
- Department of Biomedical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Hamid Behnam
- Department of Biomedical Engineering, Iran University of Science and Technology, Tehran, Iran
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2
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Alkhatib M, Hafiane A, Vieyres P, Delbos A. Deep visual nerve tracking in ultrasound images. Comput Med Imaging Graph 2019; 76:101639. [DOI: 10.1016/j.compmedimag.2019.05.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 02/19/2019] [Accepted: 05/31/2019] [Indexed: 01/08/2023]
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3
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Alkhatib M, Hafiane A, Tahri O, Vieyres P, Delbos A. Adaptive median binary patterns for fully automatic nerves tracking in ultrasound images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 160:129-140. [PMID: 29728240 DOI: 10.1016/j.cmpb.2018.03.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 02/07/2018] [Accepted: 03/20/2018] [Indexed: 05/28/2023]
Abstract
BACKGROUND AND OBJECTIVE In the last decade, Ultrasound-Guided Regional Anesthesia (UGRA) gained importance in surgical procedures and pain management, due to its ability to perform target delivery of local anesthetics under direct sonographic visualization. However, practicing UGRA can be challenging, since it requires high skilled and experienced operator. Among the difficult task that the operator can face, is the tracking of the nerve structure in ultrasound images. Tracking task in US images is very challenging due to the noise and other artifacts. METHODS In this paper, we introduce a new and robust tracking technique by using Adaptive Median Binary Pattern(AMBP) as texture feature for tracking algorithms (particle filter, mean-shift and Kanade-Lucas-Tomasi(KLT)). Moreover, we propose to incorporate Kalman filter as prediction and correction steps for the tracking algorithms, in order to enhance the accuracy, computational cost and handle target disappearance. RESULTS The proposed method have been applied on real data and evaluated in different situations. The obtained results show that tracking with AMBP features outperforms other descriptors and achieved best performance with 95% accuracy. CONCLUSIONS This paper presents the first fully automatic nerve tracking method in Ultrasound images. AMBP features outperforms other descriptors in all situations such as noisy and filtered images.
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Affiliation(s)
- Mohammad Alkhatib
- INSA Centre Val de Loire, Laboratoire PRISME EA 4229, Bourges F-18000, France; Université d'Orléans, Laboratoire PRISME EA 4229, Bourges F-18000, France
| | - Adel Hafiane
- INSA Centre Val de Loire, Laboratoire PRISME EA 4229, Bourges F-18000, France.
| | - Omar Tahri
- INSA Centre Val de Loire, Laboratoire PRISME EA 4229, Bourges F-18000, France
| | - Pierre Vieyres
- Université d'Orléans, Laboratoire PRISME EA 4229, Bourges F-18000, France
| | - Alain Delbos
- Clinique Medipôle Garonne, Toulouse F-31036, France
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4
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Jeng GS, Zontak M, Parajuli N, Lu A, Ta K, Sinusas AJ, Duncan JS, O’Donnell M. Efficient Two-Pass 3-D Speckle Tracking for Ultrasound Imaging. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2018; 6:17415-17428. [PMID: 30740286 PMCID: PMC6365000 DOI: 10.1109/access.2018.2815522] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Speckle tracking based on block matching is the most common method for multi-dimensional motion estimation in ultrasound elasticity imaging. Extension of two-dimensional (2-D) methods to three dimensions (3-D) has been problematic because of the large computational load of 3-D tracking, as well as performance issues related to the low frame (volume) rates of 3-D images. To address both of these problems, we have developed an efficient two-pass tracking method suited to cardiac elasticity imaging. PatchMatch, originally developed for image editing, has been adapted for ultrasound to provide first-pass displacement estimates. Second-pass estimation uses conventional block matching within a much smaller search region. 3-D displacements are then obtained using correlation filtering previously shown to be effective against speckle decorrelation. Both simulated and in vivo canine cardiac results demonstrate that the proposed two-pass method reduces computational cost compared to conventional 3-D exhaustive search by a factor of 10. Moreover, it outperforms one-pass tracking by a factor of about 3 in terms of root-mean-square error relative to available ground-truth displacements.
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Affiliation(s)
- Geng-Shi Jeng
- Department of Bioengineering, University of Washington, Seattle, WA 98195 USA
| | - Maria Zontak
- College of Computer and Information Science, Northeastern University, Seattle, WA 98109 USA
| | - Nripesh Parajuli
- Department of Electrical Engineering, Yale University, New Haven, CT 06520 USA
| | - Allen Lu
- Department of Biomedical Engineering, Yale University, New Haven, CT 06520 USA
| | - Kevinminh Ta
- Department of Biomedical Engineering, Yale University, New Haven, CT 06520 USA
| | - Albert J. Sinusas
- Department of Radiology and Biomedical Imaging, Yale University, New Haven, CT 06520 USA
| | - James S. Duncan
- Department of Electrical Engineering, Yale University, New Haven, CT 06520 USA
- Department of Biomedical Engineering, Yale University, New Haven, CT 06520 USA
- Department of Radiology and Biomedical Imaging, Yale University, New Haven, CT 06520 USA
| | - Matthew O’Donnell
- Department of Bioengineering, University of Washington, Seattle, WA 98195 USA
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5
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Chien CY, Chen JW, Chang CH, Huang CC. Tracking Dynamic Tongue Motion in Ultrasound Images for Obstructive Sleep Apnea. ULTRASOUND IN MEDICINE & BIOLOGY 2017; 43:2791-2805. [PMID: 28942270 DOI: 10.1016/j.ultrasmedbio.2017.08.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Revised: 07/19/2017] [Accepted: 08/02/2017] [Indexed: 06/07/2023]
Abstract
Obstructive sleep apnea (OSA), a breathing disorder characterized by repetitive collapse of the pharyngeal airway during sleep, can cause intermittent hypoxemia and frequent arousal. The evaluation of dynamic tongue motion not only provides the biomechanics and pathophysiology for OSA diagnosis, but also helps doctors to determine treatment strategies for these patients with OSA. The purpose of this study was to develop and verify a dedicated tracking algorithm, called the modified optical flow (OF)-based method, for monitoring the dynamic motion of the tongue base in ultrasound image sequences derived from controls and patients with OSA. The performance of the proposed method was verified by phantom and synthetic data. A common tracking method, the normalized cross-correlation method, was included for comparison. The efficacy of the algorithms was evaluated by calculating the estimated displacement error. All results indicated that the modified OF-based method exhibited higher accuracy in verification experiments. In the human subject experiment, all participants performed the Müller maneuver (MM) to simulate the contour changes of the tongue base with a negative pharyngeal airway pressure in sleep apnea. Ultrasound image sequences of the tongue were obtained during 10 s of a transition from normal breathing to the MM, and these were measured using the modified OF-based method. The results indicated that the displacement of the tongue base during the MM was larger in the controls than in the patients with OSA (p < 0.05); the calculated areas of the tongue in the controls and patients with OSA were 24.9 ± 3.0 and 27.6 ± 3.3 cm2, respectively, during normal breathing (p < 0.05), and 24.7 ± 3.6 and 27.3 ± 3.8 cm2, respectively, at the end of the MM. The percentage changes in the tongue area were 2.2% and 1.3% in the controls and patients with OSA, respectively. We found that quantitative assessment of tongue motion by ultrasound imaging is suitable for evaluating pharyngeal airway behavior in OSA patients with minimal invasiveness and easy accessibility.
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Affiliation(s)
- Chih-Yen Chien
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
| | - Jeng-Wen Chen
- Department of Otolaryngology Head and Neck Surgery, Cardinal Tien Hospital, New Taipei City, Taiwan; School of Medicine, Fu-Jen Catholic University, New Taipei City, Taiwan
| | - Chun-Hsiang Chang
- Department of Otolaryngology Head and Neck Surgery, Cardinal Tien Hospital, New Taipei City, Taiwan
| | - Chih-Chung Huang
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan.
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6
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Alessandrini M, Heyde B, Queiros S, Cygan S, Zontak M, Somphone O, Bernard O, Sermesant M, Delingette H, Barbosa D, De Craene M, ODonnell M, Dhooge J. Detailed Evaluation of Five 3D Speckle Tracking Algorithms Using Synthetic Echocardiographic Recordings. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:1915-1926. [PMID: 26960220 DOI: 10.1109/tmi.2016.2537848] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A plethora of techniques for cardiac deformation imaging with 3D ultrasound, typically referred to as 3D speckle tracking techniques, are available from academia and industry. Although the benefits of single methods over alternative ones have been reported in separate publications, the intrinsic differences in the data and definitions used makes it hard to compare the relative performance of different solutions. To address this issue, we have recently proposed a framework to simulate realistic 3D echocardiographic recordings and used it to generate a common set of ground-truth data for 3D speckle tracking algorithms, which was made available online. The aim of this study was therefore to use the newly developed database to contrast non-commercial speckle tracking solutions from research groups with leading expertise in the field. The five techniques involved cover the most representative families of existing approaches, namely block-matching, radio-frequency tracking, optical flow and elastic image registration. The techniques were contrasted in terms of tracking and strain accuracy. The feasibility of the obtained strain measurements to diagnose pathology was also tested for ischemia and dyssynchrony.
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7
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O'Shea T, Bamber J, Fontanarosa D, van der Meer S, Verhaegen F, Harris E. Review of ultrasound image guidance in external beam radiotherapy part II: intra-fraction motion management and novel applications. Phys Med Biol 2016; 61:R90-137. [PMID: 27002558 DOI: 10.1088/0031-9155/61/8/r90] [Citation(s) in RCA: 66] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Imaging has become an essential tool in modern radiotherapy (RT), being used to plan dose delivery prior to treatment and verify target position before and during treatment. Ultrasound (US) imaging is cost-effective in providing excellent contrast at high resolution for depicting soft tissue targets apart from those shielded by the lungs or cranium. As a result, it is increasingly used in RT setup verification for the measurement of inter-fraction motion, the subject of Part I of this review (Fontanarosa et al 2015 Phys. Med. Biol. 60 R77-114). The combination of rapid imaging and zero ionising radiation dose makes US highly suitable for estimating intra-fraction motion. The current paper (Part II of the review) covers this topic. The basic technology for US motion estimation, and its current clinical application to the prostate, is described here, along with recent developments in robust motion-estimation algorithms, and three dimensional (3D) imaging. Together, these are likely to drive an increase in the number of future clinical studies and the range of cancer sites in which US motion management is applied. Also reviewed are selections of existing and proposed novel applications of US imaging to RT. These are driven by exciting developments in structural, functional and molecular US imaging and analytical techniques such as backscatter tissue analysis, elastography, photoacoustography, contrast-specific imaging, dynamic contrast analysis, microvascular and super-resolution imaging, and targeted microbubbles. Such techniques show promise for predicting and measuring the outcome of RT, quantifying normal tissue toxicity, improving tumour definition and defining a biological target volume that describes radiation sensitive regions of the tumour. US offers easy, low cost and efficient integration of these techniques into the RT workflow. US contrast technology also has potential to be used actively to assist RT by manipulating the tumour cell environment and by improving the delivery of radiosensitising agents. Finally, US imaging offers various ways to measure dose in 3D. If technical problems can be overcome, these hold potential for wide-dissemination of cost-effective pre-treatment dose verification and in vivo dose monitoring methods. It is concluded that US imaging could eventually contribute to all aspects of the RT workflow.
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Affiliation(s)
- Tuathan O'Shea
- Joint Department of Physics, Institute of Cancer Research and Royal Marsden NHS Foundation Trust, Sutton, London SM2 5NG, UK
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8
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Bernard O, Bosch JG, Heyde B, Alessandrini M, Barbosa D, Camarasu-Pop S, Cervenansky F, Valette S, Mirea O, Bernier M, Jodoin PM, Domingos JS, Stebbing RV, Keraudren K, Oktay O, Caballero J, Shi W, Rueckert D, Milletari F, Ahmadi SA, Smistad E, Lindseth F, van Stralen M, Wang C, Smedby O, Donal E, Monaghan M, Papachristidis A, Geleijnse ML, Galli E, D'hooge J. Standardized Evaluation System for Left Ventricular Segmentation Algorithms in 3D Echocardiography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:967-977. [PMID: 26625409 DOI: 10.1109/tmi.2015.2503890] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Real-time 3D Echocardiography (RT3DE) has been proven to be an accurate tool for left ventricular (LV) volume assessment. However, identification of the LV endocardium remains a challenging task, mainly because of the low tissue/blood contrast of the images combined with typical artifacts. Several semi and fully automatic algorithms have been proposed for segmenting the endocardium in RT3DE data in order to extract relevant clinical indices, but a systematic and fair comparison between such methods has so far been impossible due to the lack of a publicly available common database. Here, we introduce a standardized evaluation framework to reliably evaluate and compare the performance of the algorithms developed to segment the LV border in RT3DE. A database consisting of 45 multivendor cardiac ultrasound recordings acquired at different centers with corresponding reference measurements from three experts are made available. The algorithms from nine research groups were quantitatively evaluated and compared using the proposed online platform. The results showed that the best methods produce promising results with respect to the experts' measurements for the extraction of clinical indices, and that they offer good segmentation precision in terms of mean distance error in the context of the experts' variability range. The platform remains open for new submissions.
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9
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Heyde B, Alessandrini M, Hermans J, Barbosa D, Claus P, D'hooge J. Anatomical Image Registration Using Volume Conservation to Assess Cardiac Deformation From 3D Ultrasound Recordings. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:501-511. [PMID: 26394416 DOI: 10.1109/tmi.2015.2479556] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Myocardial deformation imaging can provide valuable insights in myocardial mechanics and help in the diagnosis, prognosis and follow-up of cardiac diseases. However, extracting these indices in 3D is challenging due to the limitations in spatial and temporal resolution of the current volumetric ultrasound systems. For this purpose, we developed an anatomical free-form deformation image registration framework which is locally adapted to the anatomy of the heart. In this work we explored whether incorporating a myocardial volume conservation regularizer would improve strain estimates. We evaluated our technique on in silico echo sequences featuring realistic speckle textures and showed the volume conservation regularizer to be beneficial in reducing strain errors further when used in combination with a smoothness penalty. This combination led to more physiological boundary conditions. It also made distinguishing ischemic from normal segments easier in clinical images.
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10
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De Luca V, Székely G, Tanner C. Estimation of Large-Scale Organ Motion in B-Mode Ultrasound Image Sequences: A Survey. ULTRASOUND IN MEDICINE & BIOLOGY 2015; 41:3044-3062. [PMID: 26360977 DOI: 10.1016/j.ultrasmedbio.2015.07.022] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Revised: 06/13/2015] [Accepted: 07/16/2015] [Indexed: 06/05/2023]
Abstract
Reviewed here are methods developed for following (i.e., tracking) structures in medical B-mode ultrasound time sequences during large-scale motion. The resulting motion estimation problem and its key components are defined. The main tracking approaches are described, and their strengths and weaknesses are discussed. Existing motion estimation methods, tested on multiple in vivo sequences, are categorized with respect to their clinical applications, namely, cardiac, respiratory and muscular motion. A large number of works in this field had to be discarded as thorough validation of the results was missing. The remaining relevant works identified indicate the possibility of reaching an average tracking accuracy up to 1-2 mm. Real-time performance can be achieved using several methods. Yet only very few of these have progressed to clinical practice. The latest trends include incorporation of complementary and prior information. Advances are expected from common evaluation databases and 4-D ultrasound scanning technologies.
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Affiliation(s)
- Valeria De Luca
- Computer Vision Laboratory, ETH Zurich, Zurich, Switzerland.
| | - Gábor Székely
- Computer Vision Laboratory, ETH Zurich, Zurich, Switzerland
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11
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Yu Y, Zhang S, Li K, Metaxas D, Axel L. Deformable models with sparsity constraints for cardiac motion analysis. Med Image Anal 2014; 18:927-37. [PMID: 24721617 PMCID: PMC4876050 DOI: 10.1016/j.media.2014.03.002] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Revised: 03/08/2014] [Accepted: 03/11/2014] [Indexed: 11/18/2022]
Abstract
Deformable models integrate bottom-up information derived from image appearance cues and top-down priori knowledge of the shape. They have been widely used with success in medical image analysis. One limitation of traditional deformable models is that the information extracted from the image data may contain gross errors, which adversely affect the deformation accuracy. To alleviate this issue, we introduce a new family of deformable models that are inspired from the compressed sensing, a technique for accurate signal reconstruction by harnessing some sparseness priors. In this paper, we employ sparsity constraints to handle the outliers or gross errors, and integrate them seamlessly with deformable models. The proposed new formulation is applied to the analysis of cardiac motion using tagged magnetic resonance imaging (tMRI), where the automated tagging line tracking results are very noisy due to the poor image quality. Our new deformable models track the heart motion robustly, and the resulting strains are consistent with those calculated from manual labels.
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Affiliation(s)
- Yang Yu
- Department of Computer Science, Rutgers University, Piscataway, NJ, USA
| | - Shaoting Zhang
- Department of Computer Science, University of North Carolina at Charlotte, NC, USA.
| | - Kang Li
- Department of Industrial and Systems Engineering, Rutgers University, Piscataway, NJ, USA
| | - Dimitris Metaxas
- Department of Computer Science, Rutgers University, Piscataway, NJ, USA
| | - Leon Axel
- Radiology Department, New York University, New York, NY, USA
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12
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Heyde B, Bouchez S, Thieren S, Vandenheuvel M, Jasaityte R, Barbosa D, Claus P, Maes F, Wouters P, D'Hooge J. Elastic image registration to quantify 3-D regional myocardial deformation from volumetric ultrasound: experimental validation in an animal model. ULTRASOUND IN MEDICINE & BIOLOGY 2013; 39:1688-1697. [PMID: 23791543 DOI: 10.1016/j.ultrasmedbio.2013.02.463] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2013] [Revised: 02/19/2013] [Accepted: 02/24/2013] [Indexed: 06/02/2023]
Abstract
Although real-time 3-D echocardiography has the potential to allow more accurate assessment of global and regional ventricular dynamics compared with more traditional 2-D ultrasound examinations, it still requires rigorous testing and validation should it break through as a standard examination in routine clinical practice. However, only a limited number of studies have validated 3-D strain algorithms in an in vivo experimental setting. The aim of the present study, therefore, was to validate a registration-based strain estimation methodology in an animal model. Volumetric images were acquired in 14 open-chest sheep instrumented with ultrasonic microcrystals. Radial strain (ɛRR), longitudinal strain (ɛLL) and circumferential strain (ɛCC) were estimated during different stages: at rest, during reduced and increased cardiac inotropy induced by esmolol and dobutamine infusion, respectively, and during acute ischemia. Agreement between image-based and microcrystal-based strain estimates was evaluated by their linear correlation, indicating that all strain components could be estimated with acceptable accuracy (r = 0.69 for ɛRR, r = 0.64 for ɛLL and r = 0.62 for ɛCC). These findings are comparable to the performance of the current state-of-the-art commercial 3-D speckle tracking methods. Furthermore, shape of the strain curves, timing of peak values and location of dysfunctional regions were identified well. Whether 3-D elastic registration performs better than 3-D block matching-based methodologies still remains to be proven.
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Affiliation(s)
- Brecht Heyde
- Laboratory on Cardiovascular Imaging and Dynamics, KU Leuven, Leuven, Belgium.
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13
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Ultrasound imaging method for internal jugular vein measurement and estimation of circulating blood volume. Int J Comput Assist Radiol Surg 2013; 9:231-9. [DOI: 10.1007/s11548-013-0921-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2013] [Accepted: 07/03/2013] [Indexed: 01/01/2023]
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14
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Robust myocardial motion tracking for echocardiography: variational framework integrating local-to-global deformation. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2013; 2013:974027. [PMID: 23554841 PMCID: PMC3608188 DOI: 10.1155/2013/974027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2012] [Accepted: 01/28/2013] [Indexed: 11/17/2022]
Abstract
This paper proposes a robust real-time myocardial border tracking algorithm for echocardiography. Commonly, after an initial contour of LV border is traced at one or two frames from the entire cardiac cycle, LV contour tracking is performed over the remaining frames. Among a variety of tracking techniques, optical flow method is the most widely used for motion estimation of moving objects. However, when echocardiography data is heavily corrupted in some local regions, the errors bring the tracking point out of the endocardial border, resulting in distorted LV contours. This shape distortion often occurs in practice since the data acquisition is affected by ultrasound artifacts, dropouts, or shadowing phenomena of cardiac walls. The proposed method is designed to deal with this shape distortion problem by integrating local optical flow motion and global deformation into a variational framework. The proposed descent method controls the individual tracking points to follow the local motions of a specific speckle pattern, while their overall motions are confined to the global motion constraint being approximately an affine transform of the initial tracking points. Many real experiments show that the proposed method achieves better overall performance than conventional methods.
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15
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Mukherjee R, Sprouse C, Pinheiro A, Abraham T, Burlina P. Computing myocardial motion in 4-dimensional echocardiography. ULTRASOUND IN MEDICINE & BIOLOGY 2012; 38:1284-97. [PMID: 22677256 PMCID: PMC3698618 DOI: 10.1016/j.ultrasmedbio.2012.03.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2011] [Revised: 01/27/2012] [Accepted: 03/03/2012] [Indexed: 05/26/2023]
Abstract
We describe a novel method for computing dense 3D myocardial motion with high accuracy in four-dimensional (4D) echocardiography (3 dimensions spatial plus time). The method is based on a classic variational optical flow technique but exploits modern developments in optical flow research to utilize the full capabilities of 4D echocardiography. Using a variety of metrics, we present an in-depth performance evaluation of the method on synthetic, phantom, and intraoperative 4D transesophageal echocardiographic data. When compared with state-of-the-art optical flow and speckle tracking techniques currently found in 4D echocardiography, the method we present shows notable improvements in error rates. We believe the performance improvements shown can have a positive impact when the method is used as input for various applications, such as strain computation, biomechanical modeling, and automated diagnostics.
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Affiliation(s)
- Ryan Mukherjee
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD, USA
| | - Chad Sprouse
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD, USA
| | | | | | - Philippe Burlina
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD, USA
- Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA
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16
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Heyde B, Cygan S, Choi HF, Lesniak-Plewinska B, Barbosa D, Elen A, Claus P, Loeckx D, Kaluzynski K, D'hooge J. Regional cardiac motion and strain estimation in three-dimensional echocardiography: a validation study in thick-walled univentricular phantoms. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2012; 59:668-682. [PMID: 22547278 DOI: 10.1109/tuffc.2012.2245] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Automatic quantification of regional left ventricular deformation in volumetric ultrasound data remains challenging. Many methods have been proposed to extract myocardial motion, including techniques using block matching, phase-based correlation, differential optical flow methods, and image registration. Our lab previously presented an approach based on elastic registration of subsequent volumes using a B-spline representation of the underlying transformation field. Encouraging results were obtained for the assessment of global left ventricular function, but a thorough validation on a regional level was still lacking. For this purpose, univentricular thick-walled cardiac phantoms were deformed in an experimental setup to locally assess strain accuracy against sonomicrometry as a reference method and to assess whether regions containing stiff inclusions could be detected. Our method showed good correlations against sonomicrometry: r(2) was 0.96, 0.92, and 0.84 for the radial (ε(RR)), longitudinal (ε(LL)), and circumferential (ε(CC)) strain, respectively. Absolute strain errors and strain drift were low for ε(LL) (absolute mean error: 2.42%, drift: -1.05%) and ε(CC) (error: 1.79%, drift: -1.33%) and slightly higher for ε(RR) (error: 3.37%, drift: 3.05%). The discriminative power of our methodology was adequate to resolve full transmural inclusions down to 17 mm in diameter, although the inclusion-to-surrounding tissue stiffness ratio was required to be at least 5:2 (absolute difference of 39.42 kPa). When the inclusion-to-surrounding tissue stiffness ratio was lowered to approximately 2:1 (absolute difference of 22.63 kPa), only larger inclusions down to 27 mm in diameter could still be identified. Radial strain was found not to be reliable in identifying dysfunctional regions.
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Affiliation(s)
- Brecht Heyde
- Laboratory of Cardiovascular Imaging and Dynamics, University of Leuven (KU Leuven), Leuven, Belgium.
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Torkashvand P, Behnam H, Sani ZA. Modified optical flow technique for cardiac motions analysis in echocardiography images. JOURNAL OF MEDICAL SIGNALS & SENSORS 2012; 2:121-7. [PMID: 23717803 PMCID: PMC3660707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2012] [Accepted: 07/12/2012] [Indexed: 11/25/2022]
Abstract
The quantitative analysis of cardiac motions in echocardiography images is a noteworthy issue in processing of these images. Cardiac motions can be estimated by optical flow (OF) computation in different regions of image which is based on the assumption that the intensity of a moving pattern remains constant in consecutive frames. However, in echocardiographic sequences, this assumption may be violated because of unique specifications of ultrasound. There are some methodsapplying the brightness variation effect in OF. Almost all of them have presented a mathematical brightness variation model globally in the images. Nevertheless, there is not a brightness variation model for echocardiographic images in these methods. Therefore, we are looking for a method to apply brightness variations locally in different regions of the image. In this study, we proposed a method to modify ausual OF technique by considering intensity variation. To evaluate this method, we implement two other OF-based methods, one usual OF method and a modified OF method applying brightness variation as a multiplier and an offset (generalized dynamic imaging model [GDIM]) and compare them with ours. These algorithms and ours were implemented on real 2D echocardiograms. Our method resulted in more accurate estimations than two others. At last, we compared our method with expert'spoint of view and observed that three distance metrics between them was appropriately smaller than other methods. The Haussdorff distance between the estimated curve defined by the proposed method and the expert defined curve is 4.81 pixels less than this distance for Lucas-Kanade and 2.28 pixels less than GDIM.
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Affiliation(s)
- Paria Torkashvand
- Department of Biomedical Engineering, Iran University of Science and Technology, School of Electrical Engineering, Tehran, Iran,Address for correspondence: Mrs. Paria Torkashvand, Department of Biomedical Engineering, Iran University of Science and Technology, School of Electrical Engineering, Tehran, Iran. E-mail:
| | - Hamid Behnam
- Department of Biomedical Engineering, Iran University of Science and Technology, School of Electrical Engineering, Tehran, Iran
| | - Zahra Alizadeh Sani
- Department of Cardiovascular Medicine, Rajaei Cardiovascular Medical and Research Center, Tehran, Iran
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18
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Rajpoot K, Grau V, Noble JA, Szmigielski C, Becher H. Multiview fusion 3-D echocardiography: improving the information and quality of real-time 3-D echocardiography. ULTRASOUND IN MEDICINE & BIOLOGY 2011; 37:1056-1072. [PMID: 21684452 DOI: 10.1016/j.ultrasmedbio.2011.04.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2010] [Revised: 03/24/2011] [Accepted: 04/26/2011] [Indexed: 05/30/2023]
Abstract
The advent of real-time 3-D echocardiography (RT3DE) promised dynamic 3-D image acquisition with the potential of a more objective and complete functional analysis. In spite of that, 2-D echocardiography remains the backbone of echocardiography imaging in current clinical practice, with RT3DE mainly used for clinical research. The uptake of RT3DE has been slow because of missing anatomic information, limited field-of-view (FOV) and tedious analysis procedures. This paper presents multiview fusion 3D echocardiography, where multiple images with complementary information are acquired from different probe positions. These multiple images are subsequently aligned and fused together for preserving salient structures in a single, multiview fused image. A novel and simple wavelet-based fusion algorithm is proposed that exploits the low- and high-frequency separation capability of the wavelet analysis. The results obtained show that the proposed multiview fusion considerably improves the contrast (31.1%), contrast-to-noise ratio (46.7%), signal-to-noise ratio (44.7%) and anatomic features (12%) in 3-D echocardiography, and enlarges the FOV (28.2%). This indicates that multiview fusion substantially enhances the image quality and information.
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Affiliation(s)
- Kashif Rajpoot
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, UK.
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19
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Leung KYE, Danilouchkine MG, van Stralen M, de Jong N, van der Steen AFW, Bosch JG. Left ventricular border tracking using cardiac motion models and optical flow. ULTRASOUND IN MEDICINE & BIOLOGY 2011; 37:605-616. [PMID: 21376448 DOI: 10.1016/j.ultrasmedbio.2011.01.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2010] [Revised: 01/14/2011] [Accepted: 01/14/2011] [Indexed: 05/30/2023]
Abstract
The use of automated methods is becoming increasingly important for assessing cardiac function quantitatively and objectively. In this study, we propose a method for tracking three-dimensional (3-D) left ventricular contours. The method consists of a local optical flow tracker and a global tracker, which uses a statistical model of cardiac motion in an optical-flow formulation. We propose a combination of local and global trackers using gradient-based weights. The algorithm was tested on 35 echocardiographic sequences, with good results (surface error: 1.35 ± 0.46 mm, absolute volume error: 5.4 ± 4.8 mL). This demonstrates the method's potential in automated tracking in clinical quality echocardiograms, facilitating the quantitative and objective assessment of cardiac function.
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Affiliation(s)
- K Y Esther Leung
- Biomedical Engineering, Thoraxcenter, Erasmus MC, The Netherlands.
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20
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Rajpoot K, Grau V, Noble JA, Becher H, Szmigielski C. The evaluation of single-view and multi-view fusion 3D echocardiography using image-driven segmentation and tracking. Med Image Anal 2011; 15:514-28. [PMID: 21420892 DOI: 10.1016/j.media.2011.02.007] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2010] [Revised: 02/18/2011] [Accepted: 02/21/2011] [Indexed: 11/18/2022]
Abstract
Real-time 3D echocardiography (RT3DE) promises a more objective and complete cardiac functional analysis by dynamic 3D image acquisition. Despite several efforts towards automation of left ventricle (LV) segmentation and tracking, these remain challenging research problems due to the poor-quality nature of acquired images usually containing missing anatomical information, speckle noise, and limited field-of-view (FOV). Recently, multi-view fusion 3D echocardiography has been introduced as acquiring multiple conventional single-view RT3DE images with small probe movements and fusing them together after alignment. This concept of multi-view fusion helps to improve image quality and anatomical information and extends the FOV. We now take this work further by comparing single-view and multi-view fused images in a systematic study. In order to better illustrate the differences, this work evaluates image quality and information content of single-view and multi-view fused images using image-driven LV endocardial segmentation and tracking. The image-driven methods were utilized to fully exploit image quality and anatomical information present in the image, thus purposely not including any high-level constraints like prior shape or motion knowledge in the analysis approaches. Experiments show that multi-view fused images are better suited for LV segmentation and tracking, while relatively more failures and errors were observed on single-view images.
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Affiliation(s)
- Kashif Rajpoot
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford OX3 7DQ, UK.
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21
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Lorsakul A, Duan Q, Po MJ, Angelini E, Homma S, Laine AF. Parameterization of real-time 3D speckle tracking framework for cardiac strain assessment. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011; 2011:2654-2657. [PMID: 22254887 DOI: 10.1109/iembs.2011.6090730] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Cross-correlation based 3D speckle tracking algorithm can be used to automatically track myocardial motion on three dimensional real-time (RT3D) echocardiography. The goal of this study was to experimentally investigate the effects of different parameters associated with such algorithm to ensure accurate cardiac strain measurements. The investigation was performed on 10 chronic obstructive pulmonary disease RT3DE cardiac ultrasound images. The following two parameters were investigated: 1) the gradient threshold of the anisotropic diffusion pre-filtering and 2) the window size of the cross correlation template matching in the speckle tracking. Results suggest that the optimal gradient threshold of the anisotropic filter depends on the average gradient of the background speckle noise, and that an optimal pair of template size and search window size can be identified determines the cross-correlation level and computational cost.
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Affiliation(s)
- Auranuch Lorsakul
- Department of Biomedical Engineering, Columbia University, ET-351, 1210 AmsterdamAvenue, New York, NY 10027, USA.
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22
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Ultrasound echo is related to stress and strain in tendon. J Biomech 2010; 44:424-9. [PMID: 21030024 DOI: 10.1016/j.jbiomech.2010.09.033] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2010] [Revised: 09/28/2010] [Accepted: 09/30/2010] [Indexed: 12/21/2022]
Abstract
The mechanical behavior of tendons has been well studied in vitro. A noninvasive method to acquire mechanical data would be highly beneficial. Elastography has been a promising method of gathering in vivo tissue mechanical behavior, but it has inherent limitations. This study presents acoustoelasticity as an alternative ultrasound-based method of measuring tendon stress and strain by reporting a relationship between ultrasonic echo intensity (B-mode ultrasound image brightness) and mechanical behavior of tendon in vitro. Porcine digital flexor tendons were cyclically loaded in a mechanical testing system while an ultrasonic echo response was recorded. We report that echo intensity closely follows the applied cyclic strain pattern in time with higher strain protocols resulting in larger echo intensity changes. We also report that echo intensity is related nonlinearly to stress and nearly linearly to strain. This indicates that ultrasonic echo intensity is related to the mechanical behavior in a loaded tissue by an acoustoelastic response, as previously described in homogeneous, nearly incompressible materials. Acoustoelasticity is therefore able to relate strain-dependent stiffness and stress to the reflected echo, even in the processed B-mode signals reflected from viscoelastic and inhomogeneous material such as tendon, and is a promising metric to acquire in vivo mechanical data noninvasively.
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23
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Byram B, Holley G, Giannantonio D, Trahey G. 3-D phantom and in vivo cardiac speckle tracking using a matrix array and raw echo data. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2010; 57:839-54. [PMID: 20378447 PMCID: PMC3479244 DOI: 10.1109/tuffc.2010.1489] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Cardiac motion has been tracked using various methods, which vary in their invasiveness and dimensionality. One such noninvasive modality for cardiac motion tracking is ultrasound. Three-dimensional ultrasound motion tracking has been demonstrated using detected data at low volume rates. However, the effects of volume rate, kernel size, and data type (raw and detected) have not been sufficiently explored. First comparisons are made within the stated variables for 3-D speckle tracking. Volumetric data were obtained in a raw, baseband format using a matrix array attached to a high parallel receive beam count scanner. The scanner was used to acquire phantom and human in vivo cardiac volumetric data at 1000-Hz volume rates. Motion was tracked using phase-sensitive normalized cross-correlation. Subsample estimation in the lateral and elevational dimensions used the grid-slopes algorithm. The effects of frame rate, kernel size, and data type on 3-D tracking are shown. In general, the results show improvement of motion estimates at volume rates up to 200 Hz, above which they become stable. However, peak and pixel hopping continue to decrease at volume rates higher than 200 Hz. The tracking method and data show, qualitatively, good temporal and spatial stability (for independent kernels) at high volume rates.
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Affiliation(s)
- Brett Byram
- Department of Biomedical Engineering, Duke University, Durham, NC, USA.
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24
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Zhu Y, Papademetris X, Sinusas AJ, Duncan JS. A coupled deformable model for tracking myocardial borders from real-time echocardiography using an incompressibility constraint. Med Image Anal 2010; 14:429-48. [PMID: 20350833 DOI: 10.1016/j.media.2010.02.005] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2008] [Revised: 02/06/2010] [Accepted: 02/22/2010] [Indexed: 11/19/2022]
Abstract
Real-time three-dimensional (RT3D) echocardiography is a new image acquisition technique that allows instantaneous acquisition of volumetric images for quantitative assessment of cardiac morphology and function. To quantify many important diagnostic parameters, such as ventricular volume, ejection fraction, and cardiac output, an automatic algorithm to delineate the left ventricle (LV) from RT3D echocardiographic images is essential. While a number of efforts have been made towards segmentation of the LV endocardial (ENDO) boundaries, the segmentation of epicardial (EPI) boundaries remains problematic. In this paper, we present a coupled deformable model that addresses this problem. The idea behind our method is that the volume of the myocardium is close to being constant during a cardiac cycle and our model uses this coupling as an important constraint. We employ two surfaces, each driven by the image-derived information that takes into account ultrasound physics by modeling the speckle statistics using the Nakagami distribution while maintaining the coupling. By simultaneously evolving two surfaces, the final segmentation of the myocardium is thus achieved. Results from 80 sets of synthetic data and 286 sets of real canine data were evaluated against the ground truth and against outlines from three independent observers, respectively. We show that results obtained with our incompressibility constraint were more accurate than those obtained without constraint or with a wall thickness constraint, and were comparable to those from manual segmentation.
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Affiliation(s)
- Yun Zhu
- Departments of Biomedical Engineering and Diagnostic Radiology, Yale University, 310 Cedar Street, New Haven, CT 06520, United States.
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25
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Leung KYE, Bosch JG. Automated border detection in three-dimensional echocardiography: principles and promises. EUROPEAN JOURNAL OF ECHOCARDIOGRAPHY 2010; 11:97-108. [PMID: 20139440 DOI: 10.1093/ejechocard/jeq005] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Several automated border detection approaches for three-dimensional echocardiography have been developed in recent years, allowing quantification of a range of clinically important parameters. In this review, the background and principles of these approaches and the different classes of methods are described from a practical perspective, as well as the research trends to achieve a robust method.
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Affiliation(s)
- K Y Esther Leung
- Thoraxcenter Biomedical Engineering, Erasmus Medical Center, Rotterdam, The Netherlands
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26
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Laine AF. In the Spotlight: Biomedical Imaging. IEEE Rev Biomed Eng 2010; 3:7-9. [DOI: 10.1109/rbme.2010.2085591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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27
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Bouchard MB, Chen BR, Burgess SA, Hillman EMC. Ultra-fast multispectral optical imaging of cortical oxygenation, blood flow, and intracellular calcium dynamics. OPTICS EXPRESS 2009; 17:15670-8. [PMID: 19724566 PMCID: PMC2760073 DOI: 10.1364/oe.17.015670] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Camera-based optical imaging of the exposed brain allows cortical hemodynamic responses to stimulation to be examined. Typical multispectral imaging systems utilize a camera and illumination at several wavelengths, allowing discrimination between changes in oxy- and deoxyhemoglobin concentration. However, most multispectral imaging systems utilize white light sources and mechanical filter wheels to multiplex illumination wavelengths, which are slow and difficult to synchronize at high frame rates. We present a new LED-based system capable of high-resolution multispectral imaging at frame rates exceeding 220 Hz. This improved performance enables simultaneous visualization of hemoglobin oxygenation dynamics within single vessels, changes in vessel diameters, blood flow dynamics from the motion of erythrocytes, and dynamically changing fluorescence.
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28
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Abstract
This article resumes on a selected set of topics and collects promising and recent research advances in the field of multimodal temporal data analysis, high-field magnetic resonance spectroscopy, trends in computer-aided diagnosis and advances in cardiac diagnostic imaging. The first section briefly points to promising work on statistical models for tracking, detection, and segmentation in multimodal temporal imagery. Section III gives a brief snapshot of slice selective free induction decay (FID) acquisition for 7 tesla high-field MR imaging. Section IV outlines highlights in comparative validation of computer-aided diagnosis and associated image analysis algorithms spanning a variety of application domains from the heart to the eye. Lastly, Section V describes advances in the analysis of real-time three-dimensional (3-D) echocardiography for computing myocardial strain.
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Affiliation(s)
- Andrew F Laine
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA.
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