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Liu X, Song C, Liu Y, Qu K, Bi J, Bi J, Wang Y, Yang Y, Sun J, Guo Z, Li G, Liu J, Yin G. High Genetic Diversity of Porcine Sapovirus From Diarrheic Piglets in Yunnan Province, China. Front Vet Sci 2022; 9:854905. [PMID: 35873674 PMCID: PMC9300989 DOI: 10.3389/fvets.2022.854905] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 06/01/2022] [Indexed: 11/13/2022] Open
Abstract
As one of the most important enteric viruses, sapovirus (SaV) can infect humans and a variety of animals. Until now, 19 SaV genogroups have been identified, among which 4 from human (GI, GII, GIV, and GV) and 8 from swine (GIII, GV–GXI). Porcine sapovirus (PoSaV) GIII has been prevalent in China; however, the status of PoSaV infection in Yunnan province remains unknown. In this study, 202 fecal samples were collected from piglets associated with outbreaks of acute diarrhea in Yunnan between January and May 2020. PoSaV detection revealed that the total PoSaV infection rate in Yunnan was 35.2%, with 21 PoSaV strains determined and phylogenetically analyzed. The phylogenetic tree analyses demonstrated that twenty PoSaV strains belonged to GIII and fell into five genotypes, whereas one PoSaV strain (YNQB) belonged to GV. Sequence alignments revealed deletions in VP2 region in 10 of the 20 GIII strains, as well as deletions and insertions in VP1 region of the GV strain (YNQB). Furthermore, genomic recombination analyses showed that two GIII strains (YNAN and YNJD) were recombinants, closely related to reference sequences MK965898 and LC215880, MK965898 and FJ387164, respectively. In summary, PoSaV-GIII strains were identified in Yunnan in 2020, and for the first time, a PoSaV-GV strain was identified from China, whereas the comprehensive analyses illustrated high genetic diversity of Yunnan PoSaV strains. This study may shed new light on the current PoSaV infections in Yunnan and pave the way toward further control of the PoSaV infections in China.
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Affiliation(s)
- Xiao Liu
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Chunlian Song
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Yinghua Liu
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Kaixing Qu
- Academy of Science and Technology, Chuxiong Normal University, Chuxiong, China
| | - Junyu Bi
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Junlong Bi
- Academy of Science and Technology, Chuxiong Normal University, Chuxiong, China
| | - Yunhua Wang
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Ying Yang
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
| | - Junhua Sun
- College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Zhigang Guo
- College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Ganwu Li
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Jianping Liu
- College of Life Sciences, Nanjing Normal University, Nanjing, China
- *Correspondence: Jianping Liu
| | - Gefen Yin
- College of Animal Veterinary Medicine, Yunnan Agricultural University, Kunming, China
- Gefen Yin
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Davidson I, Stamelou E, Giantsis IA, Papageorgiou KV, Petridou E, Kritas SK. The Complexity of Swine Caliciviruses. A Mini Review on Genomic Diversity, Infection Diagnostics, World Prevalence and Pathogenicity. Pathogens 2022; 11:pathogens11040413. [PMID: 35456088 PMCID: PMC9030053 DOI: 10.3390/pathogens11040413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 03/25/2022] [Accepted: 03/26/2022] [Indexed: 02/01/2023] Open
Abstract
Caliciviruses are single stranded RNA viruses, non-enveloped structurally, that are implicated in the non-bacterial gastroenteritis in various mammal species. Particularly in swine, viral gastroenteritis represents a major problem worldwide, responsible for significant economic losses for the pig industry. Among the wide range of viruses that are the proven or suspected etiological agents of gastroenteritis, the pathogenicity of the members of Caliciviridae family is among the less well understood. In this context, the present review presents and discusses the current knowledge of two genera belonging to this family, namely the Norovirus and the Sapovirus, in relation to swine. Aspects such as pathogenicity, clinical evidence, symptoms, epidemiology and worldwide prevalence, genomic diversity, identification tools as well as interchanging hosts are not only reviewed but also critically evaluated. Generally, although often asymptomatic in pigs, the prevalence of those microbes in pig farms exhibits a worldwide substantial increasing trend. It should be mentioned, however, that the factors influencing the symptomatology of these viruses are still far from well established. Interestingly, both these viruses are also characterized by high genetic diversity. These high levels of molecular diversity in Caliciviridae family are more likely a result of recombination rather than evolutionary or selective adaptation via mutational steps. Thus, molecular markers for their detection are mostly based on conserved regions such as the RdRp region. Finally, it should be emphasized that Norovirus and the Sapovirus may also infect other domestic, farm and wild animals, including humans, and therefore their surveillance and clarification role in diseases such as diarrhea is a matter of public health importance as well.
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Affiliation(s)
- Irit Davidson
- Division of Avian Diseases, Kimron Veterinary Institute, Bet Dagan 50250, Israel;
| | - Efthymia Stamelou
- Department of Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, School of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (E.S.); (K.V.P.); (E.P.); (S.K.K.)
| | - Ioannis A. Giantsis
- Department of Animal Science, Faculty of Agricultural Sciences, University of Western Macedonia, 53100 Florina, Greece
- Correspondence:
| | - Konstantinos V. Papageorgiou
- Department of Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, School of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (E.S.); (K.V.P.); (E.P.); (S.K.K.)
| | - Evanthia Petridou
- Department of Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, School of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (E.S.); (K.V.P.); (E.P.); (S.K.K.)
| | - Spyridon K. Kritas
- Department of Microbiology and Infectious Diseases, Faculty of Veterinary Medicine, School of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (E.S.); (K.V.P.); (E.P.); (S.K.K.)
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Nagai M, Wang Q, Oka T, Saif LJ. Porcine sapoviruses: Pathogenesis, epidemiology, genetic diversity, and diagnosis. Virus Res 2020; 286:198025. [PMID: 32470356 PMCID: PMC7255249 DOI: 10.1016/j.virusres.2020.198025] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 05/07/2020] [Accepted: 05/13/2020] [Indexed: 11/16/2022]
Abstract
The first porcine Sapovirus (SaV) Cowden strain was discovered in 1980. To date, eight genogroups (GIII, V-IX) and three genogroups (GIII, GV, and GVI) of porcine SaVs have been detected from domestic pigs worldwide and wild boars in Japan, respectively based on the capsid sequences. Although GIII Cowden strain replicated in the villous epithelial cells and caused intestinal lesions in the proximal small intestines (mainly in duodenal and less in jejunum), leading to mild to severe diarrhea, in the orally inoculated neonatal gnotobiotic pigs, the significance of porcine SaVs in different ages of pigs with diarrhea in the field is still undetermined. This is due to two reasons: 1) similar prevalence of porcine SaVs was detected in diarrheic and non-diarrheic pigs; and 2) co-infection of porcine SaVs with other enteric pathogens is common in pigs. Diagnosis of porcine SaV infection is mainly based on the detection of viral nucleic acids using reverse transcription (RT)-PCR and sequencing. Much is unknown about these genetically diverse viruses to understand their role in pig health and to evaluate whether vaccines are needed to prevent SaV infection.
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Affiliation(s)
- Makoto Nagai
- Laboratory of Infectious Disease, School of Veterinary Medicine, Azabu University, 1-17-71, Fuchinobe, Chuo-ku, Sagamihara, Kanagawa, 252-5201, Japan
| | - Qiuhong Wang
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, College of Food, Agricultural and Environmental Sciences, Department of Veterinary Preventive Medicine, The Ohio State University, Wooster, OH, USA.
| | - Tomoichiro Oka
- Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan
| | - Linda J Saif
- Food Animal Health Research Program, Ohio Agricultural Research and Development Center, College of Food, Agricultural and Environmental Sciences, Department of Veterinary Preventive Medicine, The Ohio State University, Wooster, OH, USA
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Diseases of the Alimentary Tract. Vet Med (Auckl) 2017. [PMCID: PMC7167529 DOI: 10.1016/b978-0-7020-5246-0.00007-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Jun Q, Lulu T, Qingling M, Xingxing Z, Haiting L, Shasha G, Zibing C, Xuepeng C, Jinsheng Z, Zaichao Z, Kuojun C, Chuangfu C. Serological and molecular investigation of porcine sapovirus infection in piglets in Xinjiang, China. Trop Anim Health Prod 2016; 48:863-9. [PMID: 26898687 DOI: 10.1007/s11250-016-1023-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Accepted: 02/14/2016] [Indexed: 01/26/2023]
Abstract
Porcine sapovirus (PoSaV) is one of the important pathogens that cause acute gastroenteritis in piglets. A survey on the infection and epidemic status of PoSaV in Xinjiang Province, Northwest China, was conducted in this study. We applied indirect viral protein 1 (VP1)-ELISA method to detect specific antibodies in 1218 serum samples of 3-month-old piglets collected from eight regions in Xinjiang during 2013-2014 and also detected PoSaV in 146 diarrhea stools of piglets in these eight regions using RT-PCR technology. The results showed that the PoSaV-serological positive rates in piglets in eight different regions in Xinjiang were between 32.82 and 47.06% with a mean rate of 37.68%. The average positive rate of PCR in stools of piglets was 3.42%. Sequencing and comparative analysis of five PCR-amplified DNA fragments revealed that four epidemic strains of PoSaV (swine/XJ-KO1, swine/XJ-AK2, swine/XJ-KS1, and swine/XJ-SHZ1) shared high nucleotide and amino acid identities with Cowden strain, while strain swine/XJ-AK1 shared higher high identities with Po/OH-JJ681/2000/US isolate. Phylogenetic clustering further verified that the epidemic strains of PoSaVs, i.e., swine/XJ-KO1, swine/XJ-AK2, swine/XJ-KS1, and swine/XJ-SHZ1, belong to genogroup (GIII) while swine/XJ-AK1 belongs to GVI. This survey confirmed for the first time that PoSaV infection was common in piglets in Xinjiang, China, and that the epidemic strains exist at least in both GIII and GVI clusters. This study provided the useful epidemiological data for scientific control and prevention of this disease.
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Affiliation(s)
- Qiao Jun
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
| | - Tian Lulu
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
| | - Meng Qingling
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China.
| | - Zhang Xingxing
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
| | - Lu Haiting
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
| | - Gong Shasha
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
| | - Cheng Zibing
- Center for Animal Disease Prevention and Control, Tacheng, Xinjiang, 834700, China
| | - Cai Xuepeng
- State Key Lab of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu, 730046, China
| | - Zhang Jinsheng
- Center for Animal Disease Prevention and Control, Tacheng, Xinjiang, 834700, China
| | - Zhang Zaichao
- Center for Animal Disease Prevention and Control, Changji, Xinjiang, 831100, China
| | - Cai Kuojun
- Center for Animal Disease Prevention and Control, Xinjiang, 830000, China
| | - Chen Chuangfu
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, China
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Valente CS, Alfieri AF, Barry AF, Leme RA, Lorenzetti E, Alfieri AA. Age distribution of porcine sapovirus asymptomatic infection and molecular evidence of genogroups GIII and GIX? circulation in distinct Brazilian pig production systems. Trop Anim Health Prod 2015; 48:21-7. [DOI: 10.1007/s11250-015-0912-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Accepted: 09/07/2015] [Indexed: 12/19/2022]
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Liu GH, Li RC, Huang ZB, Yang J, Xiao CT, Li J, Li MX, Yan YQ, Yu XL. RT-PCR test for detecting porcine sapovirus in weanling piglets in Hunan Province, China. Trop Anim Health Prod 2012; 44:1335-9. [DOI: 10.1007/s11250-012-0138-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/21/2012] [Indexed: 01/21/2023]
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Liu GH, Li RC, Li J, Huang ZB, Xiao CT, Luo W, Ge M, Jiang DL, Yu XL. Seroprevalence of porcine cytomegalovirus and sapovirus infection in pigs in Hunan province, China. Arch Virol 2011; 157:521-4. [PMID: 22167251 DOI: 10.1007/s00705-011-1189-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2011] [Accepted: 11/30/2011] [Indexed: 12/13/2022]
Abstract
The seroprevalence of porcine cytomegalovirus (PCMV) and sapovirus (SaV) infections in pigs was investigated in Hunan province, China, between May 2005 and October 2010. A total of 500 pig serum samples collected from 10 representative administrative regions in Hunan province were evaluated for antibodies against PCMV and SaV using enzyme-linked immunosorbent assay (ELISA). The overall seroprevalence of porcine cytomegalovirus and sapovirus in pigs was 96.40% (482/500) and 63.40% (317/500), and the seropositivity of 10 herds we surveyed varied, ranging from 94.74% to 98.48% and 56.36% to 72.50%, respectively. The highest prevalence was found in breeding sows (96.67% for PCMV and 83.33% for SaVs). The results of the present survey indicated that infections with porcine cytomegalovirus and sapovirus are highly prevalent in pigs in Hunan province, China.
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Affiliation(s)
- Guo-Hua Liu
- College of Veterinary Medicine, Hunan Agricultural University, Changsha 410128, Hunan Province, People's Republic of China
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