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Leal dos Santos D, Chaúque BJM, Virginio VG, Cossa VC, Pettan-Brewer C, Schrekker HS, Rott MB. Occurrence of Naegleria fowleri and their implication for health - a look under the One Health approaches. Int J Hyg Environ Health 2022; 246:114053. [DOI: 10.1016/j.ijheh.2022.114053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 10/06/2022] [Accepted: 10/09/2022] [Indexed: 11/06/2022]
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Saberi R, Seifi Z, Dodangeh S, Najafi A, Abdollah Hosseini S, Anvari D, Taghipour A, Norouzi M, Niyyati M. A systematic literature review and meta‐analysis on the global prevalence of
Naegleria
spp. in water sources. Transbound Emerg Dis 2020; 67:2389-2402. [DOI: 10.1111/tbed.13635] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 05/07/2020] [Accepted: 05/14/2020] [Indexed: 12/15/2022]
Affiliation(s)
- Reza Saberi
- Department of Medical Parasitology School of Medicine Toxoplasmosis Research CenterMazandaran University of Medical Sciences Sari Iran
- Student Research Committee Mazandaran University of Medical Sciences Sari Iran
| | - Zahra Seifi
- Student Research Committee Mazandaran University of Medical Sciences Sari Iran
| | - Samira Dodangeh
- Department of Medical Parasitology School of Medicine Toxoplasmosis Research CenterMazandaran University of Medical Sciences Sari Iran
| | - Azar Najafi
- Department of Medical Parasitology Paramedical Faculty Ilam University of Medical Sciences Ilam Iran
- Razi Herbal Medicines Research Center Lorestan University of Medical Sciences Lorestan Iran
| | - Seyed Abdollah Hosseini
- Department of Medical Parasitology School of Medicine Toxoplasmosis Research CenterMazandaran University of Medical Sciences Sari Iran
| | - Davood Anvari
- Department of Medical Parasitology School of Medicine Toxoplasmosis Research CenterMazandaran University of Medical Sciences Sari Iran
| | - Ali Taghipour
- Department of Parasitology Faculty of Medical Sciences Tarbiat Modares University Tehran Iran
| | - Maryam Norouzi
- Department of Medical Parasitology and Mycology Faculty of Medicine Shahid Beheshti University of Medical Sciences Tehran Iran
| | - Maryam Niyyati
- Department of Medical Parasitology and Mycology Faculty of Medicine Shahid Beheshti University of Medical Sciences Tehran Iran
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Shatleh-Rantisi D, Tamimi A, Ashhab Y. Improving sensitivity of single tube nested PCR to detect fastidious microorganisms. Heliyon 2020; 6:e03246. [PMID: 32042975 PMCID: PMC7002839 DOI: 10.1016/j.heliyon.2020.e03246] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 11/24/2019] [Accepted: 01/14/2020] [Indexed: 11/17/2022] Open
Abstract
Single Tube Nested PCR (ST-nPCR) is of value to clinical laboratories with limited settings for the detection of fastidious microorganisms. The detection sensitivity of ST-nPCR is dependent on ensuring minimal leftovers of outer primers during the second round of the reaction. In this work, we investigated various approaches to optimize the performance of outer primers, including decreasing outer primer concentrations; using antisense oligonucleotides to block outer primers; using chemically modified inner primers; and using Q5 Taq polymerase that lacks 5′-3′ exonuclease and strand displacement capabilities. These solutions were tested on C. abortus and C. psittaci, which are both fastidious intracellular bacteria that are difficult to diagnose. The best obtained result was by using Q5 Taq polymerase. A detection limit with a range between 0.1 and 1 ag was achieved, which corresponds to a range between 0.2 and 2 copies of the plasmid positive control. This level of sensitivity is comparable or even better than the sensitivity achieved by TaqMan probe based real-time PCR assays. The assay was validated using 70 veterinary clinical samples from small ruminant abortions and 10% of these samples gave positive results. In conclusion, sensitivity of ST-nPCR to detect fastidious microorganisms can be improved by using Taq polymerases that lacks 5′-3′ exonuclease. The proposed assay is affordable and applicable to a wide range of fastidious pathogens and can be suitable for laboratories with limited settings.
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Affiliation(s)
- Diala Shatleh-Rantisi
- Palestine-Korea Biotechnology Center, Palestine Polytechnic University, P.O-Box 198, Hebron, Palestine
| | - Asmaa Tamimi
- Palestine-Korea Biotechnology Center, Palestine Polytechnic University, P.O-Box 198, Hebron, Palestine
| | - Yaqoub Ashhab
- Palestine-Korea Biotechnology Center, Palestine Polytechnic University, P.O-Box 198, Hebron, Palestine
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Siddiqui R, Ali IKM, Cope JR, Khan NA. Biology and pathogenesis of Naegleria fowleri. Acta Trop 2016; 164:375-394. [PMID: 27616699 DOI: 10.1016/j.actatropica.2016.09.009] [Citation(s) in RCA: 113] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2016] [Revised: 09/06/2016] [Accepted: 09/06/2016] [Indexed: 12/13/2022]
Abstract
Naegleria fowleri is a protist pathogen that can cause lethal brain infection. Despite decades of research, the mortality rate related with primary amoebic meningoencephalitis owing to N. fowleri remains more than 90%. The amoebae pass through the nose to enter the central nervous system killing the host within days, making it one of the deadliest opportunistic parasites. Accordingly, we present an up to date review of the biology and pathogenesis of N. fowleri and discuss needs for future research against this fatal infection.
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Cope JR, Ali IK. Primary Amebic Meningoencephalitis: What Have We Learned in the Last 5 Years? Curr Infect Dis Rep 2016; 18:31. [PMID: 27614893 DOI: 10.1007/s11908-016-0539-4] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Primary amebic meningoencephalitis (PAM) is a devastating infection of the brain caused by the thermophilic free-living ameba, Naegleria fowleri. Infection can occur when water containing the ameba enters the body through the nose, usually during recreational water activities such as swimming or diving. Historically, in the USA, cases were mostly reported from the warmer southern-tier states. In the last 5 years, several notable changes have been documented in PAM epidemiology including a northward expansion of infections and new types of water exposures. The recent reports of two PAM survivors provide hope for improved outcomes with early diagnosis and aggressive treatment. Advanced molecular laboratory tools such as genome sequencing might provide more insight into the pathogenicity of N. fowleri. Clinicians treating patients with meningitis and warm freshwater exposure are encouraged to consider PAM in their differential diagnoses.
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Affiliation(s)
- Jennifer R Cope
- Waterborne Disease Prevention Branch, Division of Foodborne, Waterborne, and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd NE, MS C-09, Atlanta, GA, 30329, USA.
| | - Ibne K Ali
- Waterborne Disease Prevention Branch, Division of Foodborne, Waterborne, and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd NE, MS C-09, Atlanta, GA, 30329, USA
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Al-Herrawy AZ, Gad MA. Isolation and molecular identification of Naegleria fowleri from Nile river, Egypt. J Egypt Public Health Assoc 2015; 90:161-165. [PMID: 26854897 DOI: 10.1097/01.epx.0000475937.97216.03] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
BACKGROUND Members of the genus Naegleria are free-living amoebae distributed in various aquatic environments. Naegleria fowleri is the only species that can cause fatal primary amoebic meningoencephalitis in humans. MATERIALS AND METHODS A total of 48 Nile water samples were collected from the water stream passing though Cairo. The samples were processed for the detection of Naegleria spp. using non-nutrient agar at 45°C. The isolates of Naegleria spp. were identified based on the morphologic criteria of trophozoite, flagellated and cyst stages. Molecular characterization of the isolates was performed using PCR. RESULTS The obtained results showed that Naegleria spp. were found in 45.8% of Nile water samples by means of microscopic examination. Seasonally, the highest prevalence of Naegleria spp. was recorded in summer (66.7%). Moreover, the highest prevalence of N. fowleri was recorded in summer (25%). CONCLUSION The occurrence of heat-tolerant Naegleria spp., especially N. fowleri, in Nile water should be considered as a potential health threat.
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Affiliation(s)
- Ahmad Z Al-Herrawy
- Water Pollution Research Department, National Research Centre, Giza, Egypt
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Mahittikorn A, Mori H, Popruk S, Roobthaisong A, Sutthikornchai C, Koompapong K, Siri S, Sukthana Y, Nacapunchai D. Development of a rapid, simple method for detecting Naegleria fowleri visually in water samples by loop-mediated isothermal amplification (LAMP). PLoS One 2015; 10:e0120997. [PMID: 25822175 PMCID: PMC4379150 DOI: 10.1371/journal.pone.0120997] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Accepted: 02/09/2015] [Indexed: 12/03/2022] Open
Abstract
Naegleria fowleri is the causative agent of the fatal disease primary amebic meningoencephalitis. Detection of N. fowleri using conventional culture and biochemical-based assays is time-consuming and laborious, while molecular techniques, such as PCR, require laboratory skills and expensive equipment. We developed and evaluated a novel loop-mediated isothermal amplification (LAMP) assay targeting the virulence-related gene for N. fowleri. Time to results is about 90 min and amplification products were easily detected visually using hydroxy naphthol blue. The LAMP was highly specific after testing against related microorganisms and able to detect one trophozoite, as determined with spiked water and cerebrospinal fluid samples. The assay was then evaluated with a set of 80 water samples collected during the flooding crisis in Thailand in 2011, and 30 natural water samples from border areas of northern, eastern, western, and southern Thailand. N. fowleri was detected in 13 and 10 samples using LAMP and PCR, respectively, with a Kappa coefficient of 0.855. To the best of our knowledge, this is the first report of a LAMP assay for N. fowleri. Due to its simplicity, speed, and high sensitivity, the LAMP method described here might be useful for quickly detecting and diagnosing N. fowleri in water and clinical samples, particularly in resource-poor settings.
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Affiliation(s)
- Aongart Mahittikorn
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- * E-mail: (AM); (DN)
| | - Hirotake Mori
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Supaluk Popruk
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Amonrattana Roobthaisong
- Section of Bacterial Pathogenesis, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
| | - Chantira Sutthikornchai
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Khuanchai Koompapong
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Sukhontha Siri
- Department of Epidemiology, Faculty of Public Health, Mahidol University, Bangkok, Thailand
| | - Yaowalark Sukthana
- Department of Protozoology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Duangporn Nacapunchai
- Department of Parasitology, Faculty of Medical Technology, Mahidol University, Bangkok, Thailand
- * E-mail: (AM); (DN)
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Comparison of real-time PCR methods for the detection of Naegleria fowleri in surface water and sediment. Parasitol Res 2015; 114:1739-46. [PMID: 25855343 DOI: 10.1007/s00436-015-4359-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Accepted: 01/30/2015] [Indexed: 10/24/2022]
Abstract
Naegleria fowleri is a thermophilic free-living ameba found in freshwater environments worldwide. It is the cause of a rare but potentially fatal disease in humans known as primary amebic meningoencephalitis. Established N. fowleri detection methods rely on conventional culture techniques and morphological examination followed by molecular testing. Multiple alternative real-time PCR assays have been published for rapid detection of Naegleria spp. and N. fowleri. Foursuch assays were evaluated for the detection of N. fowleri from surface water and sediment. The assays were compared for thermodynamic stability, analytical sensitivity and specificity, detection limits, humic acid inhibition effects, and performance with seeded environmental matrices. Twenty-one ameba isolates were included in the DNA panel used for analytical sensitivity and specificity analyses. N. fowleri genotypes I and III were used for method performance testing. Two of the real-time PCR assays were determined to yield similar performance data for specificity and sensitivity for detecting N. fowleri in environmental matrices.
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Bartrand TA, Causey JJ, Clancy JL. Naegleria fowleri:An emerging drinking water pathogen. ACTA ACUST UNITED AC 2014. [DOI: 10.5942/jawwa.2014.106.0140] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Affiliation(s)
| | - Jonathan Jake Causey
- DHH-OPH Engineering Services, Louisiana Department of Health and Hospitals, Office of Public Health
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Siddique MNI, Sakinah Abd Munaim M, Zularisam A. Mesophilic and thermophilic biomethane production by co-digesting pretreated petrochemical wastewater with beef and dairy cattle manure. J IND ENG CHEM 2014. [DOI: 10.1016/j.jiec.2013.03.030] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Improved Method for the Detection and Quantification of Naegleria fowleri in Water and Sediment Using Immunomagnetic Separation and Real-Time PCR. J Parasitol Res 2013; 2013:608367. [PMID: 24228172 PMCID: PMC3818898 DOI: 10.1155/2013/608367] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2013] [Revised: 08/26/2013] [Accepted: 09/11/2013] [Indexed: 11/18/2022] Open
Abstract
Primary amebic meningoencephalitis (PAM) is a rare and typically fatal infection caused by the thermophilic free-living ameba, Naegleria fowleri. In 2010, the first confirmed case of PAM acquired in Minnesota highlighted the need for improved detection and quantification methods in order to study the changing ecology of N. fowleri and to evaluate potential risk factors for increased exposure. An immunomagnetic separation (IMS) procedure and real-time PCR TaqMan assay were developed to recover and quantify N. fowleri in water and sediment samples. When one liter of lake water was seeded with N. fowleri strain CDC:V212, the method had an average recovery of 46% and detection limit of 14 amebas per liter of water. The method was then applied to sediment and water samples with unknown N. fowleri concentrations, resulting in positive direct detections by real-time PCR in 3 out of 16 samples and confirmation of N. fowleri culture in 6 of 16 samples. This study has resulted in a new method for detection and quantification of N. fowleri in water and sediment that should be a useful tool to facilitate studies of the physical, chemical, and biological factors associated with the presence and dynamics of N. fowleri in environmental systems.
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Rodríguez-Gómez R, Renman G, Moreno L, Liu L. A model to describe the performance of the UASB reactor. Biodegradation 2013; 25:239-51. [DOI: 10.1007/s10532-013-9656-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Accepted: 07/11/2013] [Indexed: 10/26/2022]
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