1
|
Faria AM, Araújo ICS, Ferreira LL, Bastos TSA, Figueira SV, de Souza Almeida AM, Andrade MA, Linhares GFC. Prevalence, antimicrobial resistance and detection of virulence genes of Escherichia coli and Salmonella spp. isolated from white-lipped peccaries and collared peccaries. Braz J Microbiol 2024; 55:2035-2041. [PMID: 38713279 PMCID: PMC11153414 DOI: 10.1007/s42770-024-01359-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 04/25/2024] [Indexed: 05/08/2024] Open
Abstract
Salmonella spp. and Escherichia coli are implicated in human and animal infections and require antimicrobial treatment in many situations. Faecal samples of healthy white-lipped peccaries (Pecari tajacu) (n = 30) and collared peccaries (Tayassu pecari ) (n = 60) obtained in three farms located in the Midwest Brazil. The antimicrobial profiles of commensal E. coli from P. tajacu and T. pecari from commercial herds in Brazil were isolated and analyzed and virulence genes were detected. Among 90 healthy animals, no Salmonella spp. were isolated. However, 30 samples (27%) tested positive for E. coli, with 18 isolates from P. tajacu and 12 from T. pecari, representing frequencies of 58.0% and 38.7%, respectively. Additionally, other Enterobacteriaceae family bacteria were detected but not included in this analysis. However, individual samples from 30 animals tested positive for E. coli, of which 16 were isolated from P. tajacu presenting multidrug resistance and six were isolated from T. pecari presenting a similar pattern. The E. coli virulence genes detected were papC (pilus-associated pyelonephritis) in five isolates, tsh (temperature-sensitive hemagglutinin) in one isolate, and eae (enteric attachment and effacement) in one isolate. The serum resistance gene, iss (increased serum survival), was detected in four isolates. An association between these genes and the presence of hemolysin was also observed in one isolate. Thus, T. pecari and P. tajacu are potential reservoirs of pathogenic and multidrug-resistant and E. coli. Faecal E. coli of healthy P. tajacu and T. pecari could act as a possible reservoir of antimicrobial resistance genes in environment.
Collapse
Affiliation(s)
- Adriana Marques Faria
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Itallo Conrado Sousa Araújo
- Department of Animal Science, Veterinary School, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
| | - Lorena Lopes Ferreira
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal deMinas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Thiago Souza Azeredo Bastos
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Samantha Verdi Figueira
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Ana Maria de Souza Almeida
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Maria Auxiliadora Andrade
- Department of Preventive Veterinary Medicine, Veterinary School, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | | |
Collapse
|
2
|
DeLira-Bustillos N, Angulo-Zamudio UA, Leon-Sicairos N, Flores-Villaseñor H, Velazquez-Roman J, Tapia-Pastrana G, Martínez-Villa FA, Velázquez-Cruz R, Salmerón J, Canizales-Quinteros S, Canizalez-Roman A. Distribution and virulence of Escherichia coli harboring cyclomodulins and supplementary virulence genes isolates from clinical and environmental samples. Microb Pathog 2024; 190:106634. [PMID: 38556104 DOI: 10.1016/j.micpath.2024.106634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 03/25/2024] [Accepted: 03/27/2024] [Indexed: 04/02/2024]
Abstract
This study aimed to determine the prevalence of cyclomodulins (cdt, cnf, pks and cif) in Escherichia coli (E. coli) isolated from clinical and environmental samples, the presence of supplementary virulence genes (SVG), antibiotic resistance, and in vitro cytotoxicity. 413 E. coli were isolated from clinical (stool from obese subjects, normal weight subjects, children with diarrhea, and children without diarrhea; and urine from pregnant and non-pregnant women with urinary tract infections) and environmental (water and different foods) samples. PCR was performed to identify E. coli pathotypes, the four cyclomodulins, and 18 SVG; virulence score, cytotoxic assay, and antibiotic resistance assay were performed. Fifteen percent of E. coli were positive for cyclomodulins and were found in all isolation sources; however, in children with diarrhea, they were more frequent. The most frequent cyclomodulin was cdt. More DEC strains harbor cyclomodulins than non-DEC, and cyclomodulins were most frequent among aEPEC pathotype. SVG ehaC was associated with cyclomodulin-positive strains. Cyclomodulin-positive E. coli had a higher virulence score but no significant cytotoxic activity. They were slightly more resistant to antibiotics. In conclusion, cyclomodulins-positive E. coli was widely distributed in humans, food, and the environment, and they were associated with SVG ehaC, suggesting that these genes may play a role in the pathogenesis of the cyclomodulins. However, more research is needed.
Collapse
Affiliation(s)
- Nora DeLira-Bustillos
- Programa de Doctorado, Posgrado Integral en Biotecnología, FCQB, UAS, 80030, Culiacan Sinaloa, Mexico
| | | | - Nidia Leon-Sicairos
- School of Medicine, Autonomous University of Sinaloa, 80019, Culiacan Sinaloa, Mexico; Pediatric Hospital of Sinaloa, 80200, Culiacan Sinaloa, Mexico
| | - Hector Flores-Villaseñor
- School of Medicine, Autonomous University of Sinaloa, 80019, Culiacan Sinaloa, Mexico; The Sinaloa State Public Health Laboratory, Secretariat of Health, 80058, Culiacan Sinaloa, Mexico
| | - Jorge Velazquez-Roman
- School of Medicine, Autonomous University of Sinaloa, 80019, Culiacan Sinaloa, Mexico
| | - Gabriela Tapia-Pastrana
- Laboratorio de Investigación Biomédica, Hospital Regional de Alta Especialidad de Oaxaca, Oaxaca, 71256, Mexico
| | | | - Rafael Velázquez-Cruz
- Laboratorio de Genómica del Metabolismo Óseo, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, 14610, Mexico
| | - Jorge Salmerón
- Centro de Investigación en Políticas, Población y Salud de la Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Mexico City, 04510, Mexico
| | | | - Adrian Canizalez-Roman
- School of Medicine, Autonomous University of Sinaloa, 80019, Culiacan Sinaloa, Mexico; The Women's Hospital, Secretariat of Health, 80020, Culiacan Sinaloa, Mexico.
| |
Collapse
|
3
|
Uprety S, Ngo I, Maggos M, Dangol B, Sherchan SP, Shisler JL, Amarasiri M, Sano D, Nguyen TH. Multiple pathogen contamination of water, hands, and fomites in rural Nepal and the effect of WaSH interventions. Int J Hyg Environ Health 2024; 257:114341. [PMID: 38442666 DOI: 10.1016/j.ijheh.2024.114341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 01/23/2024] [Accepted: 02/16/2024] [Indexed: 03/07/2024]
Abstract
Water, Sanitation, and Hygiene (WaSH) interventions are the most effective in reducing diarrheal disease severity and prevalence. However, very few studies have investigated the effectiveness of WaSH intervention in reducing pathogen presence and concentration. In this study, we employed a microfluidic PCR approach to quantify twenty bacterial pathogens in water (n = 360), hands (n = 180), and fomite (n = 540) samples collected in rural households of Nepal to assess the pathogen exposures and the effect of WaSH intervention on contamination and exposure rates. The pathogen load and the exposure pathways for each pathogen in intervention and control villages were compared to understand the effects of WaSH intervention. Pathogens were detected in higher frequency and concentration from fomites samples, toilet handle (21.42%; 5.4,0 95%CI: mean log10 of 4.69, 5.96), utensils (23.5%; 5.47, 95%CI: mean log10 of 4.77, 6.77), and water vessels (22.42%; 5.53, 95%CI: mean log10 of 4.79, 6.60) as compared to cleaning water (14.36%; 5.05, 95%CI: mean log10 of 4.36, 5.89), drinking water (14.26%; 4.37, 85%CI: mean log10 of 4.37, 5.87), and hand rinse samples (16.92%; 5.49, 95%CI: mean log10 of 4.77, 6.39). There was no clear evidence that WaSH intervention reduced overall pathogen contamination in any tested pathway. However, we observed a significant reduction (p < 0.05) in the prevalence, but not concentration, of some target pathogens, including Enterococcus spp. in the intervention village compared to the control village for water and hands rinse samples. Conversely, no significant reduction in target pathogen concentration was observed for water and hand rinse samples. In swab samples, there was a reduction mostly in pathogen concentration rather than pathogen prevalence, highlighting that a reduction in pathogen prevalence was not always accompanied by a reduction in pathogen concentration. This study provides an understanding of WaSH intervention on microbe concentrations. Such data could help with better planning of intervention activities in the future.
Collapse
Affiliation(s)
- Sital Uprety
- Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL, USA; Department of Sanitation, Water and Solid Waste for Development (Sandec), Swiss Federal Institute of Aquatic Science and Technology (Eawag), Dübendorf, Zurich, Switzerland; Department of Civil and Environmental Engineering, Tohoku University Sendai, Japan.
| | - Isaac Ngo
- Department of Microbiology, University of Illinois at Urbana Champaign, Urbana, IL, USA
| | - Marika Maggos
- Department of Microbiology, University of Illinois at Urbana Champaign, Urbana, IL, USA
| | - Bipin Dangol
- Environment and Public Health Organization (ENPHO), Kathmandu, Nepal
| | - Samendra P Sherchan
- Environment and Public Health Organization (ENPHO), Kathmandu, Nepal; Department of Environmental Health Sciences, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, USA; BioEnvironmental Science Program Morgan State University, Baltimore, MD, 21251, USA
| | - Joanna L Shisler
- Department of Microbiology, University of Illinois at Urbana Champaign, Urbana, IL, USA; Institute of Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA
| | - Mohan Amarasiri
- School of Allied Health Sciences, Kitasato University, Sagamihara, Japan
| | - Daisuke Sano
- Department of Frontier Sciences for Advanced Environment, Tohoku University, Sendai, Japan; Department of Civil and Environmental Engineering, Tohoku University Sendai, Japan
| | - Thanh H Nguyen
- Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL, USA; Institute of Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA
| |
Collapse
|
4
|
Maloo A, Fulke AB, Sukumaran S. Toxigenic Escherichia coli with high antibiotic resistance index recovered from sands of recreational beaches of Mumbai, India. MARINE POLLUTION BULLETIN 2024; 198:115837. [PMID: 38007873 DOI: 10.1016/j.marpolbul.2023.115837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/14/2023] [Accepted: 11/19/2023] [Indexed: 11/28/2023]
Abstract
Mumbai, India's seven-island city, is known for its sandy beaches as a major tourist attraction, but urbanization and industrialization have weakened the environment. Unregulated sewage disposal and untreated effluents off the coast have made the beach environment vulnerable. Therefore, monitoring water and sand quality at beaches should be mandatory. This study was thus designed to determine the microbiological status of selected sandy beaches, viz. Versova, Juhu, and Girgaon. The study found fecal coliforms in the sand, with stx1 and stx2 genes specific for Shiga toxin-producing E. coli pathotypes in 5.5 % of isolates, whereas the presence of eaeA gene specific for enteropathogenic E. coli pathotype was detected in 12.2 % of isolates, and the presence of the LT and ST genes specific for enterotoxigenic E. coli pathotype was detected in 6.6 % of isolates. Multiple antibiotic-resistant indices indicated high-risk contamination sources. The study suggests routine monitoring of pollution levels at coastal cities' beaches.
Collapse
Affiliation(s)
- Aayushi Maloo
- Microbiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional Centre, Lokhandwala Road, Four Bungalows, Andheri (West), Mumbai 400053, Maharashtra, India
| | - Abhay B Fulke
- Microbiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional Centre, Lokhandwala Road, Four Bungalows, Andheri (West), Mumbai 400053, Maharashtra, India.
| | - Soniya Sukumaran
- Microbiology Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional Centre, Lokhandwala Road, Four Bungalows, Andheri (West), Mumbai 400053, Maharashtra, India; Biological Oceanography Division, CSIR-National Institute of Oceanography (CSIR-NIO), Regional Centre, Lokhandwala Road, Four Bungalows, Andheri (West), Mumbai 400053, Maharashtra, India
| |
Collapse
|
5
|
LaMontagne CD, Christenson EC, Rogers AT, Jacob ME, Stewart JR. Relating Antimicrobial Resistance and Virulence in Surface-Water E. coli. Microorganisms 2023; 11:2647. [PMID: 38004659 PMCID: PMC10673096 DOI: 10.3390/microorganisms11112647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 10/24/2023] [Accepted: 10/25/2023] [Indexed: 11/26/2023] Open
Abstract
The role of the environment in the emergence and spread of antimicrobial resistance (AMR) is being increasingly recognized, raising questions about the public health risks associated with environmental AMR. Yet, little is known about pathogenicity among resistant bacteria in environmental systems. Existing studies on the association between AMR and virulence are contradictory, as fitness costs and genetic co-occurrence can be opposing influences. Using Escherichia coli isolated from surface waters in eastern North Carolina, we compared virulence gene prevalence between isolates resistant and susceptible to antibiotics. We also compared the prevalence of isolates from sub-watersheds with or without commercial hog operations (CHOs). Isolates that had previously been evaluated for phenotypic AMR were paired by matching isolates resistant to any tested antibiotic with fully susceptible isolates from the same sample date and site, forming 87 pairs. These 174 isolates were evaluated by conventional PCR for seven virulence genes (bfp, fimH, cnf-1, STa (estA), EAST-1 (astA), eae, and hlyA). One gene, fimH, was found in 93.1% of isolates. Excluding fimH, at least one virulence gene was detected in 24.7% of isolates. Significant negative associations were found between resistance to at least one antibiotic and presence of at least one virulence gene, tetracycline resistance and presence of a virulence gene, resistance and STa presence, and tetracycline resistance and STa presence. No significant associations were found between CHO presence and virulence, though some sub-significant associations merit further study. This work builds our understanding of factors controlling AMR dissemination through the environment and potential health risks.
Collapse
Affiliation(s)
- Connor D. LaMontagne
- Department of Environmental Science and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27516, USA; (C.D.L.); (E.C.C.)
| | - Elizabeth C. Christenson
- Department of Environmental Science and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27516, USA; (C.D.L.); (E.C.C.)
- Nicholas Institute for Energy, Environment, and Sustainability, Duke University, Durham, NC 27705, USA
- Kenan Institute for Ethics, Duke University, Durham, NC 27705, USA
| | - Anna T. Rogers
- Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA; (A.T.R.); (M.E.J.)
- Office of Genomics Research, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27516, USA
| | - Megan E. Jacob
- Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA; (A.T.R.); (M.E.J.)
| | - Jill R. Stewart
- Department of Environmental Science and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27516, USA; (C.D.L.); (E.C.C.)
| |
Collapse
|
6
|
Soudah B, Toï N, Essossinam A, Noumonzeme B, Bignoate K, Yao L, Omasaki SK. Prevalence and co-infections of pathogenic bacteria in Nile tilapia broodstock farms: implications for aquaculture management in Togo. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:1086. [PMID: 37615774 DOI: 10.1007/s10661-023-11718-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 08/15/2023] [Indexed: 08/25/2023]
Abstract
This study aimed to evaluate the prevalence of E. coli, Pseudomonas spp., and Enterococcus spp. in Nile tilapia broodstock farms in Togo and their association with fish diseases. In total, 60 samples were collected from two tilapia broodstock farms, including 40 broodstock tilapia and 20 water samples. Each farm had concrete tanks supplied with water from two drills. Of the 40 fish samples, 20 were healthy, and the other 20 were diseased. Microbiological analysis of samples was conducted using standardized methods. The study revealed significant contamination in all collected water samples, detecting multiple bacterial populations. Bacterial infections were more prevalent in symptomatic fish, with 85% exhibiting co-infections (df = 1, χ2 = 7.03, p = 0.008). Contamination levels varied among sample types, with higher counts observed in wastewater (E. coli: 0-300 CFU/mL, Pseudomonas spp.: 3-300 CFU/mL, Enterococcus spp.: 0-55 × 102 CFU/mL) compared to drilling water (Pseudomonas spp.: 0-300 CFU/mL, E. coli: 3-400 CFU/mL, Enterococcus spp.: 0-14 × 102 CFU/mL), and intestinal samples (E. coli: 0-120 × 102 CFU/mL, Enterococcus spp.: 0-170 × 102 CFU/mL, Pseudomonas spp.: 0-60 × 102 CFU/mL) (df = 21, χ2 = 59.31, p < 0.000). Our findings emphasize the significant prevalence of pathogenic bacteria in Nile tilapia broodstock farms in Togo, highlighting the importance of water quality management and infection control strategies. Further studies are required to develop appropriate prevention strategies.
Collapse
Affiliation(s)
- Boma Soudah
- Institut Togolais de Recherche Agronomique (ITRA-Togo), Ministère de l'Agriculture, BP 1163, Cacavéli-Lomé, Togo.
- Centre International de Recherche-Développement Sur l'Elevage en Zone Subhumide (CIRDES), 01BP 454 Bobo-Dioulasso 01, Burkina Faso.
| | - N'Feidé Toï
- Institut Togolais de Recherche Agronomique (ITRA-Togo), Ministère de l'Agriculture, BP 1163, Cacavéli-Lomé, Togo
| | - Atefeimbu Essossinam
- Unité de Recherche du Laboratoire de Physiologie-Pharmacologie des Substances Naturelles, Université de Lomé, BP 1515, Lomé, Togo
| | - Bidema Noumonzeme
- Institut Supérieur des Métiers de l'Agriculture (ISMA), Université de Kara, BP 404, Kara, Togo
| | - Kombate Bignoate
- Unité de Recherche Physiopathologie Substances Bioactive et Innocuité (PSBI), Université de Lomé, BP 1515, Lomé, Togo
| | - Lombo Yao
- Institut Togolais de Recherche Agronomique (ITRA-Togo), Ministère de l'Agriculture, BP 1163, Cacavéli-Lomé, Togo
| | - Simion Kipkemboi Omasaki
- Animal Breeding and Genomics Group, Department of Animal Sciences, Kisii University, P.O Box 408-40200, Kisii, Kenya
| |
Collapse
|
7
|
Botha TL, Bamuza-Pemu E, Roopnarain A, Ncube Z, De Nysschen G, Ndaba B, Mokgalaka N, Bello-Akinosho M, Adeleke R, Mushwana A, van der Laan M, Mphahlele P, Vilakazi F, Jaca P, Ubomba-Jaswa E. Development of a GIS-based knowledge hub for contaminants of emerging concern in South African water resources using open-source software: Lessons learnt. Heliyon 2023; 9:e13007. [PMID: 36747952 PMCID: PMC9898659 DOI: 10.1016/j.heliyon.2023.e13007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/12/2023] [Accepted: 01/12/2023] [Indexed: 01/19/2023] Open
Abstract
With population growth and dwindling freshwater sources, protecting such sources has come to the forefront of water resource management. Historically, society's response to a problem is based on funding availability, current threat, and public outcry. Achieving this is largely dependent on the knowledge of the factors that are resulting in compromised water sources. These factors are constantly changing as novel contaminants are introduced into surface water sources. As we are in the information age, the interest in contaminants of emerging concern (CEC) is gaining ground. Whilst research is being conducted to identify contaminants in South African water sources, the research outputs and available information is not collated and presented to the science community and stakeholders in readily available formats and platforms. Current research outcomes need to be made known to regulators in order to develop environmental laws. By using fourth industrial revolution technology, we were able to collate available data in literature and display these in a user-friendly online format to regulatory bodies as well as researchers. A standardized excel spreadsheet was developed and uploaded to a PostgreSQL, running a PostGIS extension and was then processed in the GeoServer to allow for visualization on an interactive map which can be continuously updated. The near real-time access to information will reduce the possibility of duplication of research efforts, enhance collaboration in the discipline, and act as a CEC early warning system.
Collapse
Affiliation(s)
- Tarryn Lee Botha
- Institute for Nanotechnology and Water Sustainability, College of Science, Engineering and Technology, University of South Africa, Florida Science Campus, 1710, South Africa
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom, 2520, South Africa
- Corresponding author. Institute for Nanotechnology and Water Sustainability, College of Science, Engineering and Technology, University of South Africa, Florida Science Campus, 1710, South Africa.
| | - Emomotimi Bamuza-Pemu
- OptimalEnviro; Postnet Suite 073, Private Bag X21, Queenswood, Pretoria, 0121, South Africa
| | - Ashira Roopnarain
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
| | - Zibusiso Ncube
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
| | - Gert De Nysschen
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
| | - Busiswa Ndaba
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
| | - Ntebogeng Mokgalaka
- University of Pretoria, Mamelodi Campus, Private Bag X20, Hatfield, Pretoria, 0028, South Africa
- Tshwane University of Technology, Faculty of Science, Department of Chemistry, Private Bag X680, Pretoria, 0001, South Africa
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Maryam Bello-Akinosho
- Pathogenic Yeast Research Group, Department of Microbiology and Biochemistry, Faculty of Natural and Agricultural Sciences, University of the Free State, PO Box 339, Bloemfontein, 9300, South Africa
| | - Rasheed Adeleke
- Unit for Environmental Sciences and Management, North-West University, South Africa
| | - Akani Mushwana
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
| | - Michael van der Laan
- Agricultural Research Council (ARC) – Natural Resources and Engineering, Private Bag X79, Pretoria, 0001, South Africa
- Department of Plant and Soil Sciences, University of Pretoria, Private Bag X20 Hatfield, Pretoria, 0028, South Africa
| | - Phedisho Mphahlele
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Fanelesibonge Vilakazi
- Microbiology and Environmental Biotechnology Research Group, Agricultural Research Council – Natural Resources and Engineering, Pretoria, South Africa
- Unit for Environmental Sciences and Management, North-West University, South Africa
| | - Penny Jaca
- Water Research Commission, Lynnwood Bridge Office Park, Bloukrans Building, 4 Daventry Street, Lynnwood Manor, Pretoria, 0081, South Africa
| | - Eunice Ubomba-Jaswa
- Water Research Commission, Lynnwood Bridge Office Park, Bloukrans Building, 4 Daventry Street, Lynnwood Manor, Pretoria, 0081, South Africa
| |
Collapse
|
8
|
A Synergistic Effect of Moringa oleifera-Based Coagulant and Ultrafiltration for the Wastewater Treatment Collected from Final ETP. ADSORPT SCI TECHNOL 2022. [DOI: 10.1155/2022/1285011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Provision of safe drinking water, devoid of aetiologies, is an all-time challenge due to the usage of unsafe chemicals in most of the water treatment processes. The main objective of the present paper is to evaluate the use of Moringa oleifera (MO) as a natural coagulant in coagulation/flocculation (C/F) followed by the ultrafiltration (UF) of Final Effluent Treatment Plant wastewater treatment which can also be employed as an alternative to the present conventional methods of treatment. Process efficiency was evaluated in terms of chemical oxygen demand (COD), biochemical oxygen demand (BOD), turbidity, total hardness, alkalinity, ammoniacal nitrogen, and zeta potential along with permeability and fouling behaviour of the membrane. A significant improvement in both the physical and chemical characteristics of the effluent quality is showing a clearer colour and a greater reduction in BOD (89.74%) and COD (63.80%) values, while pH was in the acceptable range for effluent disposal. The results indicate a lower membrane fouling rate (49%), an increase in permeate flow, and better quality of the permeate, proving that the C/F-UF treatment is an effective and efficient technique for wastewater treatment. Eventually, the treated wastewater obtained with this process generates better quality water and preserves the aquatic ecosystem.
Collapse
|
9
|
Maes S, Odlare M, Jonsson A. Fecal indicator organisms in northern oligotrophic rivers: An explorative study on Escherichia coli prevalence in a mountain region with intense tourism and reindeer herding. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:264. [PMID: 35260933 PMCID: PMC8904354 DOI: 10.1007/s10661-022-09865-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 02/05/2022] [Indexed: 06/14/2023]
Abstract
Increasing pollution levels in waters from remote mountain areas in northern Sweden have been observed. To support a sustainable water quality management, it is necessary to know which environmental and antrophogenic factors influence the water quality. The purpose of this study was to map the Escherichia coli prevalence in the catchment area of the upper part of a large northern Scandinavian river and investigate the controlling factors of microbial contamination. A total of 112 water samples were collected from various locations in the research area between July 2020 and December 2020. These samples were analyzed for microbial and chemical characteristics, and information about tourism and reindeer herding was compiled. Additionally, microbial and physicochemical water characteristics collected by Indalsälven Water Conservation Association (IWCA, 1993-2020) and Swedish Meteorological and Hydrological Institute (SMHI, 2004-2020) were analyzed. The results showed that E. coli enumerations ranged between 0 and 500 CFU/100 ml. There was generally no obvious relation between suspected point sources, e.g., sewage treatment plants at mountain stations, and E. coli levels at downstream sampling points. Principal component analysis showed that E. coli was correlated to coliforms, total heterotrophic count, river discharge, CODMn and river color. Since microbial analyses are time-consuming, expensive and difficult to perform in remote areas, it is important to find more easily extracted water parameters that can serve as a proxy for E. coli. In particular, river color and discharge are promising parameters that may serve as an early indication of bacterial outbreak and fecal contamination in mountain waters.
Collapse
Affiliation(s)
- Sharon Maes
- Mid Sweden University, Faculty of Science, Technology and Media, Department of Ecotechnology and Sustainable Building Engineering, Akademigatan 1, 831 25, Östersund, Sweden.
| | - Monica Odlare
- Mid Sweden University, Faculty of Science, Technology and Media, Department of Ecotechnology and Sustainable Building Engineering, Akademigatan 1, 831 25, Östersund, Sweden
| | - Anders Jonsson
- Mid Sweden University, Faculty of Science, Technology and Media, Department of Ecotechnology and Sustainable Building Engineering, Akademigatan 1, 831 25, Östersund, Sweden
| |
Collapse
|
10
|
Tropea E, Hynds P, McDermott K, Brown RS, Majury A. Environmental adaptation of E. coli within private groundwater sources in southeastern Ontario: Implications for groundwater quality monitoring and human health. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 285:117263. [PMID: 33940229 DOI: 10.1016/j.envpol.2021.117263] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 04/19/2021] [Accepted: 04/23/2021] [Indexed: 06/12/2023]
Abstract
Groundwater quality monitoring typically employs testing for the presence of E. coli as a fecal indicator of recent ingress of human or animal fecal material. The efficacy of fecal indicator organisms is based on the primary criteria that the organism does not reproduce in the aquatic environment. However, recent studies have reported that E. coli may proliferate (i.e., has adapted to) in the external environment, including soil and surface water. To date, the presence of environmentally-adapted E. coli in groundwater has not been examined. The current study employed Clermont phylotyping and the presence of six accessory genes to identify the likely presence of adapted E. coli in private groundwater sources. E. coli isolates (n = 325) from 76 contaminated private water wells located in a southeastern Ontario watershed were compared with geographically analogous human and animal fecal E. coli isolates (n = 234). Cryptic clades III-V, a well-described environmentally-adapted Escherichia population, were identified in three separate groundwater wells, one of which exclusively comprised this adapted population. Dimensionality reduction (via Principal Component Analysis) was used to develop an "E. coli adaptation model", comprising three distinct components (groundwater, animal feces, human feces) and suggests adaptation occurs frequently in the groundwater environment. Model findings indicate that 23/76 (30.3%) wells had an entirely adapted community. Accordingly, the use of E. coli as a FIO returned a false positive result in these instances, while an additional 23/76 (30.3%) wells exhibited some evidence of adaptation (i.e., not all isolates were adapted) representing an over-estimate of the magnitude (concentration) of contamination. Study findings highlight the need to further characterize environmentally-adapted E. coli in the groundwater environment and the potential implications with respect to water quality policy, legislation and determinants of human health risk both regionally and internationally.
Collapse
Affiliation(s)
- Erica Tropea
- School of Environmental Studies, Queen's University, Kingston, Ontario, Canada; Public Health Ontario, Kingston, Ontario, Canada
| | - Paul Hynds
- Technological University Dublin, Dublin, Ireland.
| | | | - R Stephen Brown
- School of Environmental Studies, Queen's University, Kingston, Ontario, Canada
| | - Anna Majury
- School of Environmental Studies, Queen's University, Kingston, Ontario, Canada; Public Health Ontario, Kingston, Ontario, Canada
| |
Collapse
|
11
|
Kürekci C, Aydın M, Tekeli İO, Ambarcıoğlu P, Şengül SA, Sakin F. Occurrence and characterization of ciprofloxacin‐resistant
Escherichia coli
from bovine and ovine bulk tank milk samples in Turkey. J Food Saf 2021. [DOI: 10.1111/jfs.12881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Cemil Kürekci
- Department of Food Hygiene and Technology, Faculty of Veterinary Medicine Mustafa Kemal University Antakya Hatay Turkey
| | - Muhsin Aydın
- Department of Biology, Faculty of Science and Letters Adıyaman University Adıyaman Turkey
| | - İbrahim Ozan Tekeli
- Department of Pharmacology and Toxicology, Faculty of Veterinary Medicine Mustafa Kemal University Antakya Hatay Turkey
| | - Pınar Ambarcıoğlu
- Department of Biostatistics, Faculty of Veterinary Medicine Mustafa Kemal University Antakya Hatay Turkey
| | - Seydi Ahmet Şengül
- Department of Pharmacology and Toxicology, Faculty of Veterinary Medicine Mustafa Kemal University Antakya Hatay Turkey
| | - Fatih Sakin
- Department of Pharmacology and Toxicology, Faculty of Veterinary Medicine Mustafa Kemal University Antakya Hatay Turkey
| |
Collapse
|
12
|
Astley DJ, Masters N, Kuballa A, Katouli M. Commonality of adherent-invasive Escherichia coli isolated from patients with extraintestinal infections, healthy individuals and the environment. Eur J Clin Microbiol Infect Dis 2020; 40:181-192. [PMID: 33063232 DOI: 10.1007/s10096-020-04066-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 10/05/2020] [Indexed: 01/17/2023]
Abstract
Adherent-invasive Escherichia coli (AIEC) has been implicated as a microbiological factor in inflammatory bowel disease (IBD) pathogenesis. These strains are defined by their ability to adhere to and invade intestinal epithelial cells, and to survive and replicate in macrophages. We postulated that AIEC strains may commonly inhabit the gut of healthy individuals (HI), cause extraintestinal infections, and be found in sewage treatment plants (STP) and surface waters (SW). A total of 808 E. coli strains isolated from HI; patients with community-acquired urinary tract infection (CA-UTI), septicaemia and urosepsis; STP; and SW, showing a diffuse adhesion pattern to Caco-2 cells were included in this study. Typing of the strains using a combination of RAPD-PCR and PhPlate fingerprinting grouped them into 48 common clones (CCs). Representatives of each CC were tested for the ability to invade Caco-2 cells, survive and replicate in macrophages, and for the presence of six virulence genes commonly found among AIEC strains. Twenty CCs were deemed AIEC based on their ability to survive and replicate in macrophages, while encoding htrA, dsbA and clbA genes. These CCs primarily originated from HI and CA-UTI patients but were also detected in secondary locations including STP and SW. Strains lacking intramacrophagic survival and replication abilities were regarded as diffusely adhering E. coli (DAEC). Certain clones of AIEC are common in the gut of HI whilst promoting CA-UTI. The survival and persistence of AIEC in STP and SW may have serious public health ramifications for individuals predisposed to IBD.
Collapse
Affiliation(s)
- D J Astley
- Inflammation and Healing Cluster, School of Health and Sport Sciences, University of the Sunshine Coast, Maroochydore DC, Queensland, 4558, Australia
| | - N Masters
- Inflammation and Healing Cluster, School of Health and Sport Sciences, University of the Sunshine Coast, Maroochydore DC, Queensland, 4558, Australia
| | - A Kuballa
- Inflammation and Healing Cluster, School of Health and Sport Sciences, University of the Sunshine Coast, Maroochydore DC, Queensland, 4558, Australia
| | - M Katouli
- Inflammation and Healing Cluster, School of Health and Sport Sciences, University of the Sunshine Coast, Maroochydore DC, Queensland, 4558, Australia.
| |
Collapse
|
13
|
Malema MS, Abia ALK, Tandlich R, Zuma B, Mwenge Kahinda JM, Ubomba-Jaswa E. Antibiotic-Resistant Pathogenic Escherichia Coli Isolated from Rooftop Rainwater-Harvesting Tanks in the Eastern Cape, South Africa. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:ijerph15050892. [PMID: 29723970 PMCID: PMC5981931 DOI: 10.3390/ijerph15050892] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 04/25/2018] [Accepted: 04/27/2018] [Indexed: 02/06/2023]
Abstract
Although many developing countries use harvested rainwater (HRW) for drinking and other household purposes, its quality is seldom monitored. Continuous assessment of the microbial quality of HRW would ensure the safety of users of such water. The current study investigated the prevalence of pathogenic Escherichia coli strains and their antimicrobial resistance patterns in HRW tanks in the Eastern Cape, South Africa. Rainwater samples were collected weekly between June and September 2016 from 11 tanks in various areas of the province. Enumeration of E. coli was performed using the Colilert®18/Quanti-Tray® 2000 method. E. coli isolates were obtained and screened for their virulence potentials using polymerase chain reaction (PCR), and subsequently tested for antibiotic resistance using the disc-diffusion method against 11 antibiotics. The pathotype most detected was the neonatal meningitis E. coli (NMEC) (ibeA 28%) while pathotype enteroaggregative E. coli (EAEC) was not detected. The highest resistance of the E. coli isolates was observed against Cephalothin (76%). All tested pathotypes were susceptible to Gentamicin, and 52% demonstrated multiple-antibiotic resistance (MAR). The results of the current study are of public health concern since the use of untreated harvested rainwater for potable purposes may pose a risk of transmission of pathogenic and antimicrobial-resistant E. coli.
Collapse
Affiliation(s)
- Mokaba Shirley Malema
- Council for Scientific and Industrial Research, Natural Resources and the Environment, P.O. Box 395, Pretoria 0001, South Africa.
| | - Akebe Luther King Abia
- Antimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, Private Bag X54001, Durban 4000, South Africa.
| | - Roman Tandlich
- Faculty of Pharmacy, Pharmaceutical Chemistry Division, Rhodes University, Grahamstown 6140, South Africa.
| | - Bonga Zuma
- Faculty of Pharmacy, Pharmaceutical Chemistry Division, Rhodes University, Grahamstown 6140, South Africa.
| | - Jean-Marc Mwenge Kahinda
- Council for Scientific and Industrial Research, Natural Resources and the Environment, P.O. Box 395, Pretoria 0001, South Africa.
| | - Eunice Ubomba-Jaswa
- Department of Biotechnology, University of Johannesburg, 37 Nind Street, Doornfontein 2094, South Africa.
- Water Research Commission, Lynnwood Bridge Office Park, Bloukrans Building, 4 Daventry Street, Lynnwood Manor, Pretoria 0081, South Africa.
| |
Collapse
|
14
|
Vital PG, Caballes MBD, Rivera WL. Antimicrobial resistance in Escherichia coli and Salmonella spp. isolates from fresh produce and the impact to food safety. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2017; 52:683-689. [PMID: 28679083 DOI: 10.1080/03601234.2017.1331676] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Foodborne diseases associated with fresh produce consumption have escalated worldwide, causing microbial safety of produce of critical importance. Bacteria that have increasingly been detected in fresh produce are Escherichia coli and Salmonella spp., both of which have been shown to progressively display antimicrobial resistance. The study focused on the assessment of antimicrobial resistance of these enteric bacteria from different kinds of fresh produce from various open air markets and supermarkets in the Philippines. Using the disk diffusion assay on a total of 50 bacterial isolates obtained from 410 fresh produce surveyed, monoresistance to tetracycline was observed to be the most prevalent (38%), followed by multidrug resistance to tetracycline, chloramphenicol, ciprofloxacin, and nalidixic acid (4%), and lastly by dual resistance to tetracycline and chloramphenicol (2%). Using multiplex and simplex polymerase chain reaction (PCR) assays, tetA (75%) and tetB (9%) were found in tetracycline resistant isolates, whereas catI (67%) and catIII (33%) were detected in chloramphenicol resistant isolates. Sequence analysis of gyr and par genes from the ciprofloxacin and nalidixic acid resistant isolates revealed different mutations. Based on the results, fresh produce act as a reservoir of these antibiotic resistant bacteria which may pose health threat to consumers.
Collapse
Affiliation(s)
- Pierangeli G Vital
- a Institute of Biology, College of Science, University of the Philippines Diliman , Quezon City , Philippines
- b Natural Sciences Research Institute, University of the Philippines Diliman , Quezon City , Philippines
| | - Marie Bernadine D Caballes
- a Institute of Biology, College of Science, University of the Philippines Diliman , Quezon City , Philippines
| | - Windell L Rivera
- a Institute of Biology, College of Science, University of the Philippines Diliman , Quezon City , Philippines
- b Natural Sciences Research Institute, University of the Philippines Diliman , Quezon City , Philippines
| |
Collapse
|
15
|
Masters NM, Wiegand A, Thompson JM, Vollmerhausen TL, Hatje E, Katouli M. Assessing the population dynamics of Escherichia coli in a metropolitan river after an extreme flood event. JOURNAL OF WATER AND HEALTH 2017; 15:196-208. [PMID: 28362301 DOI: 10.2166/wh.2016.285] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We investigated Escherichia coli populations in a metropolitan river after an extreme flood event. Between nine and 15 of the 23 selected sites along the river were sampled fortnightly over three rounds. In all, 307 E. coli were typed using the PhP typing method and were grouped into common (C) or single (S) biochemical phenotypes (BPTs). A representative from each of the 31 identified C-BPTs was tested for 58 virulence genes (VGs) associated with intestinal and extra-intestinal E. coli, resistance to 22 antibiotics, production of biofilm and cytotoxicity to Vero cells. The number of E. coli in the first sampling round was significantly (P < 0.01) higher than subsequent rounds, whereas the number of VGs was significantly (P < 0.05) higher in isolates from the last sampling round when compared to previous rounds. Comparison of the C-BPTs with an existing database from wastewater treatment plants (WWTPs) in the same catchment showed that 40.6% of the river isolates were identical to the WWTP isolates. The relatively high number of VGs and antibiotic resistance among the C-BPTs suggests possessing and retaining these genes may provide niche advantages for those naturalised and/or persistent E. coli populations which may pose a health risk to the community.
Collapse
Affiliation(s)
- Nicole M Masters
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| | - Aaron Wiegand
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| | - Jasmin M Thompson
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| | - Tara L Vollmerhausen
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| | - Eva Hatje
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| | - Mohammad Katouli
- Genecology Research Centre, School of Health and Sports Science, University of the Sunshine Coast, Maroochydore DC, Queensland 4558, Australia E-mail:
| |
Collapse
|
16
|
Waseem H, Williams MR, Stedtfeld T, Chai B, Stedtfeld RD, Cole JR, Tiedje JM, Hashsham SA. Virulence factor activity relationships (VFARs): a bioinformatics perspective. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2017; 19:247-260. [PMID: 28261716 PMCID: PMC5897045 DOI: 10.1039/c6em00689b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Virulence factor activity relationships (VFARs) - a concept loosely based on quantitative structure-activity relationships (QSARs) for chemicals was proposed as a predictive tool for ranking risks due to microorganisms relevant to water safety. A rapid increase in sequencing capabilities and bioinformatics tools has significantly increased the potential for VFAR-based analyses. This review summarizes more than 20 bioinformatics databases and tools, developed over the last decade, along with their virulence and antimicrobial resistance prediction capabilities. With the number of bacterial whole genome sequences exceeding 241 000 and metagenomic analysis projects exceeding 13 000 and the ability to add additional genome sequences for few hundred dollars, it is evident that further development of VFARs is not limited by the availability of information at least at the genomic level. However, additional information related to co-occurrence, treatment response, modulation of virulence due to environmental and other factors, and economic impact must be gathered and incorporated in a manner that also addresses the associated uncertainties. Of the bioinformatics tools, a majority are either designed exclusively for virulence/resistance determination or equipped with a dedicated module. The remaining have the potential to be employed for evaluating virulence. This review focusing broadly on omics technologies and tools supports the notion that these tools are now sufficiently developed to allow the application of VFAR approaches combined with additional engineering and economic analyses to rank and prioritize organisms important to a given niche. Knowledge gaps do exist but can be filled with focused experimental and theoretical analyses that were unimaginable a decade ago. Further developments should consider the integration of the measurement of activity, risk, and uncertainty to improve the current capabilities.
Collapse
Affiliation(s)
- Hassan Waseem
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA.
| | - Maggie R Williams
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA.
| | - Tiffany Stedtfeld
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA.
| | - Benli Chai
- Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
| | - Robert D Stedtfeld
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA.
| | - James R Cole
- Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
| | - James M Tiedje
- Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA and Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA
| | - Syed A Hashsham
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA. and Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA and Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA
| |
Collapse
|
17
|
Shah MS, Eppinger M, Ahmed S, Shah AA, Hameed A, Hasan F. Flooding adds pathogenic Escherichia coli strains to the water sources in southern Khyber Pakhtunkhwa, Pakistan. Indian J Med Microbiol 2016; 34:483-488. [PMID: 27934827 DOI: 10.4103/0255-0857.195350] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
PURPOSE Seasonal rains in Pakistan result in heavy floods across the country, whereby faecal contaminants will be added to the water bodies and cause numerous food-borne outbreaks. The present study was aimed to determine the prevalence of diarrheagenic Escherichia coli (DEC) strains in the water sources. MATERIALS AND METHODS Two hundred water samples collected during (2011-2012) were processed for the isolation of E. coli (EC) strains. EC strains were further analysed for antibiotic susceptibility patterns, and pathogroups-specific virulence factors stx1, stx2, stx2c, eae, tir, hlyA, bfpA, estA and eltA were detected using multiplex polymerase chain reaction. RESULTS Thirty-three percent of the water samples were contaminated with EC pathotypes. Fifty percent (33/66) of the DEC pathotypes were identified as enterotoxigenic EC (ETEC). Seventy-two percent (13/18) of the enteropathogenic EC (EPEC) strains were identified as typical EPEC and 28% (5/18) as atypical EPEC. Eleven percent (7/66) of the Shiga toxin EC (STEC) isolates carried a combination of stx1 and stx2 genes. Summer was found as a peak season with 47% (31/66) for EC pathogroups' activities. Eighty-nine percent of the strains showed resistance against tetracycline. CONCLUSION ETEC and EPEC are the primary causes of water contamination in southern regions of Khyber Pakhtunkhwa province, Pakistan. Firm adherence to the prescribed drugs can decrease trends in antibiotic resistance.
Collapse
Affiliation(s)
- M S Shah
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan; Department of Biology, University of Texas at San Antonio, San Antonio, Texas, USA
| | - M Eppinger
- Department of Biology, University of Texas at San Antonio, San Antonio, Texas, USA
| | - S Ahmed
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan
| | - A A Shah
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan
| | - A Hameed
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan
| | - F Hasan
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan
| |
Collapse
|
18
|
Antibiotic resistance and virulence genes in coliform water isolates. Int J Hyg Environ Health 2016; 219:823-831. [DOI: 10.1016/j.ijheh.2016.07.015] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 07/23/2016] [Indexed: 11/23/2022]
|
19
|
Rodrigues VFV, Rivera ING, Lim KY, Jiang SC. Detection and risk assessment of diarrheagenic E. coli in recreational beaches of Brazil. MARINE POLLUTION BULLETIN 2016; 109:163-170. [PMID: 27301685 DOI: 10.1016/j.marpolbul.2016.06.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2016] [Revised: 05/25/2016] [Accepted: 06/02/2016] [Indexed: 05/13/2023]
Abstract
Marine beaches are important recreational and economic resources in Brazil, but the beaches' water quality is negatively impacted by the discharge of domestic sewage effluent. The occurrence of diarrheagenic Escherichiacoli among the E. coli isolated from three Brazilian marine beaches was investigated. Multiplex and single step PCR were used to screen 99 E. coli isolates for ten target toxin genes. Six toxin genes, stx1, eae, estp, esth, astA, and bfpA, were identified in 1% to 35% of the isolates. A quantitative microbial risk assessment (QMRA) of human exposure to diarrheagenic E. coli during marine recreation was carried out. The results indicated that the diarrheagenic E. coli risk is well below the U.S. EPA's recommended daily recreational risk benchmark. However, the overall recreational health risk due to all pathogens in the water could be much higher and exceeded the U.S. EPA's benchmark.
Collapse
Affiliation(s)
- Vanessa F V Rodrigues
- Biomedical Science Institute, Microbiology Department, University of São Paulo, Estado de São Paulo, SP 05508-000, Brazil; Department of Civil and Environmental Engineering, University of California, Irvine, CA 92697-2175, USA
| | - Irma N G Rivera
- Biomedical Science Institute, Microbiology Department, University of São Paulo, Estado de São Paulo, SP 05508-000, Brazil
| | - Keah-Ying Lim
- Department of Civil and Environmental Engineering, University of California, Irvine, CA 92697-2175, USA
| | - Sunny C Jiang
- Department of Civil and Environmental Engineering, University of California, Irvine, CA 92697-2175, USA.
| |
Collapse
|
20
|
Alegbeleye OO, Opeolu BO, Jackson VA. Investigation into the bacterial pollution levels at various sites along the Diep and Plankenburg river systems, 3 Western Cape, South Africa. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2016; 73:2590-2599. [PMID: 27232394 DOI: 10.2166/wst.2016.054] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
This study sought to investigate and compare bacterial contamination levels at six different sites along the Diep and Plankenburg river systems in the Western Cape, South Africa. Surface water and sediment samples were collected monthly from the six selected sampling sites along both river courses between January 2014 and December 2014 and were evaluated for bacterial contaminants. Microbial isolation, characterisation and identification were done using conventional techniques (serial dilution, Gram staining, and biochemical testing) and molecular identification techniques (polymerase chain reaction and DNA sequencing). A total of 19 bacterial isolates belonging to the genera Raoultella, Bacillus, Pseudomonas, Klebsiella, Escherichia, Enterobacter, Exiguobacterium, Acinetobacter, Serratia, Aeromonas, Staphylococcus and Citrobacter were isolated from the surface water and sediment samples at the end of the survey. Higher microbial load was obtained from sediment samples compared to surface water samples. Seasonal variation was also observed in terms of microbial counts. Higher microbial counts were obtained during summer sampling time compared to winter sampling time. The most contaminated site was located on Plankenburg River with average bacterial counts ranging between 3.1 × 10(5)-6.9 × 10(8) CFU/ml and 3.9 × 10(6)-2.88 × 10(9) CFU/ml from surface water and sediment, respectively, recorded at this site during winter and summer. Although lower microbial counts were recorded along the Diep River course, most of the bacterial counts recorded along both rivers exceeded the acceptable maximum limits for river water.
Collapse
Affiliation(s)
- O O Alegbeleye
- Department of Environmental and Occupational Studies, Cape Peninsula University of Technology, Cape Town 8000, South Africa; Extended Curriculum Programmes, Faculty of Applied Sciences, Cape Peninsula University of Technology, Cape Town 8000, South Africa; and Department of Biotechnology and Consumer Science, Cape Peninsula University of Technology, Cape Town 8000, South Africa E-mail: ;
| | - B O Opeolu
- Department of Environmental and Occupational Studies, Cape Peninsula University of Technology, Cape Town 8000, South Africa; Extended Curriculum Programmes, Faculty of Applied Sciences, Cape Peninsula University of Technology, Cape Town 8000, South Africa; and Department of Biotechnology and Consumer Science, Cape Peninsula University of Technology, Cape Town 8000, South Africa E-mail: ;
| | - V A Jackson
- Department of Environmental and Occupational Studies, Cape Peninsula University of Technology, Cape Town 8000, South Africa; Extended Curriculum Programmes, Faculty of Applied Sciences, Cape Peninsula University of Technology, Cape Town 8000, South Africa; and Department of Biotechnology and Consumer Science, Cape Peninsula University of Technology, Cape Town 8000, South Africa E-mail: ;
| |
Collapse
|
21
|
Wang Z, Xiao G, Zhou N, Qi W, Han L, Ruan Y, Guo D, Zhou H. Comparison of two methods for detection of fecal indicator bacteria used in water quality monitoring of the Three Gorges Reservoir. J Environ Sci (China) 2015; 38:42-51. [PMID: 26702967 DOI: 10.1016/j.jes.2015.04.029] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Revised: 04/03/2015] [Accepted: 04/09/2015] [Indexed: 06/05/2023]
Abstract
Scientifically sound methods to rapidly measure fecal indicator bacteria are important to ensure safe water for drinking and recreational purposes. A total of 200 water samples obtained from the Three Gorges Reservoir during three successive one-year study periods (October 2009 to September 2012) were analyzed using multiple-tube fermentation (MTF) and most probable numbers combined with polymerase chain reaction (MPN-PCR). The MPN-PCR method was found to be significantly more sensitive than the MTF method for detecting Escherichia coli and Enterococcus spp., and of equal sensitivity for detecting total coliforms when all surface water samples were grouped together. The two analytical methods had a strong, significant relationship, but MPN-PCR took only 12-18hr, compared with the 3-8days needed using the MTF method. Bacterial concentrations varied per sampling site but were significantly lower in the mainstream of the Yangtze River than those in the backwater areas of tributaries. The water quality of 85.8% of water samples from the mainstream was suitable for use as a centralized potable water source, while the water quality of 52.5% of water samples from the backwater areas was unsuitable for recreational activities. Relationships between fecal indicator bacteria showed significant correlation (r=0.636-0.909, p<0.01, n=200), while a weak but significant correlation was found between fecal indicators and water turbidity, water temperature, daily inflow, and total dissolved solids (r=0.237-0.532, p<0.05, n=200). The study indicated that MPN-PCR is a rapid and easily performed deoxyribonucleic acid (DNA)-based method for quantitative detection of viable total coliforms, E. coli, and Enterococcus spp. in surface water.
Collapse
Affiliation(s)
- Zhaodan Wang
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China.
| | - Guosheng Xiao
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China.
| | - Nong Zhou
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| | - Wenhua Qi
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| | - Lin Han
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| | - Yu Ruan
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| | - Dongqin Guo
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| | - Hong Zhou
- College of life science and engineering, Chongqing Three Gorges University, Wanzhou 404100 Chongqing, China
| |
Collapse
|
22
|
Titilawo Y, Obi L, Okoh A. Occurrence of virulence gene signatures associated with diarrhoeagenic and non-diarrhoeagenic pathovars of Escherichia coli isolates from some selected rivers in South-Western Nigeria. BMC Microbiol 2015; 15:204. [PMID: 26449767 PMCID: PMC4599032 DOI: 10.1186/s12866-015-0540-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2015] [Accepted: 09/30/2015] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Diarrhoeal diseases are attributable to unsafe water stemming from improper sanitation and hygiene and are reportedly responsible for extensive morbidity and mortality particularly among children in developed and developing countries. METHODS Water samples from selected rivers in Osun State, South-Western Nigeria were collected and analyzed using standard procedures. Escherichia coli isolates (n=300) were screened for 10 virulence genes using polymerase chain reaction for pathotyping. RESULTS While the virulence gene (VG) lt for enterotoxigenic E. coli had the highest prevalence of 45%, the enteropathogenic E. coli genes eae and bfp were detected in 6 and 4% of the isolates respectively. The VGs stx1 and stx2 specific for the enterohemorrhagic E. coli pathotypes were detected in 7 and 1% of the isolates respectively. Also, the VG eagg harboured by enteroaggregative pathotype and diffusely-adherent E. coli VG daaE were detected in 2 and 4% of the isolates respectively and enteroinvasive E. coli VG ipaH was not detected. In addition, the VGs papC for uropathogenic and ibeA for neonatal meningitis were frequently detected in 19 and 3% of isolates respectively. CONCLUSIONS These findings reveal the presence of diarrhoeagenic and non-diarrhoeagenic E. coli in the selected rivers and a potential public health risk as the rivers are important resources for domestic, recreational and livelihood usage by their host communities.
Collapse
Affiliation(s)
- Yinka Titilawo
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, 5700, South Africa. .,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, 5700, South Africa.
| | - Larry Obi
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, 5700, South Africa. .,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, 5700, South Africa.
| | - Anthony Okoh
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, 5700, South Africa. .,Applied and Environmental Microbiology Research Group, Department of Biochemistry and Microbiology, University of Fort Hare, Alice, 5700, South Africa.
| |
Collapse
|
23
|
Gomi R, Matsuda T, Fujimori Y, Harada H, Matsui Y, Yoneda M. Characterization of Pathogenic Escherichia coli in River Water by Simultaneous Detection and Sequencing of 14 Virulence Genes. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:6800-6807. [PMID: 25919763 DOI: 10.1021/acs.est.5b00953] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The occurrence of pathogenic Escherichia coli in environmental waters increases the risk of waterborne disease. In this study, 14 virulence genes in 669 E. coli isolates (549 isolates from the Yamato River in Japan, and 30 isolates from each of the following hosts: humans, cows, pigs, and chickens) were simultaneously quantified by multiplex PCR and dual index sequencing to determine the prevalence of potentially pathogenic E. coli. Among the 549 environmental isolates, 64 (12%) were classified as extraintestinal pathogenic E. coli (ExPEC) while eight (1.5%) were classified as intestinal pathogenic E. coli (InPEC). Only ExPEC-associated genes were detected in human isolates and pig isolates, and 11 (37%) and five (17%) isolates were classified as ExPEC, respectively. A high proportion (63%) of cow isolates possessed Shiga-toxin genes (stx1 or stx2) and they were classified as Shiga toxin-producing E. coli (STEC) or enterohemorrhagic E. coli (EHEC). Among the chicken isolates, 14 (47%) possessed iutA, which is an ExPEC-associated gene. This method can determine the sequences as well as the presence/absence of virulence genes. By comparing the sequences of virulence genes, we determined that sequences of iutA were different among sources and may be useful for discriminating isolates, although further studies including larger numbers of isolates are needed. Results indicate that humans are a likely source of ExPEC strains in the river.
Collapse
Affiliation(s)
- Ryota Gomi
- †Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, 615-8540, Kyoto, Japan
| | - Tomonari Matsuda
- ‡Research Center for Environmental Quality Management, Kyoto University, 1-2 Yumihama, Otsu, 520-0811, Shiga, Japan
| | - Yuji Fujimori
- §Graduate School of Global Environmental Studies, Kyoto University, Yoshida-honmachi, Sakyo-ku, 606-8501, Kyoto, Japan
| | - Hidenori Harada
- §Graduate School of Global Environmental Studies, Kyoto University, Yoshida-honmachi, Sakyo-ku, 606-8501, Kyoto, Japan
| | - Yasuto Matsui
- †Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, 615-8540, Kyoto, Japan
| | - Minoru Yoneda
- †Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, 615-8540, Kyoto, Japan
| |
Collapse
|
24
|
Lösch LS, Gariboglio Vázquez ML, Rivas M, Merino LA. [Detection of virulence genes of the enteroaggregative pathotype in Escherichia coli strains isolated from groundwater sources in the province of Chaco, Argentina]. Rev Argent Microbiol 2015; 47:88-94. [PMID: 26026228 DOI: 10.1016/j.ram.2015.03.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 03/06/2015] [Accepted: 03/12/2015] [Indexed: 11/19/2022] Open
Abstract
Groundwater is an important source of drinking water for many communities in Northern Argentina; particularly, in the province of Chaco, where about 14% of households use this natural resource. Enteroaggregative Escherichia coli is an emerging pathogen whose global importance in public health has increased in recent years. Despite the significant risk of disease linked to contaminated water exposure, the prevalence of E. coli pathotypes in aquatic environments is still not so well defined. The aim of the present study was to detect the presence of typical enteroaggregative E. coli through the recognition of its virulence factors aap, AA probe and aggR by molecular techniques. A total of 93 water samples from different small communities of Chaco were analyzed. E. coli was identified in 36 (38.7%) of the tested samples. Six strains isolated from different samples harbored the studied genes. Of these 6 isolates, 3 carried the aap gene, 2 the AA probe and the last one the combination of aap/aggR genes. The prevalence of E. coli isolates harboring enteroaggregative virulence genes in groundwater sources was 6.4%. This work represents the first contribution to the study of the presence and distribution of virulence genes of EAEC in groundwater sources in this region of Argentina.
Collapse
Affiliation(s)
- Liliana S Lösch
- Área de Bacteriología, Instituto de Medicina Regional, Universidad Nacional del Nordeste, Resistencia, Chaco, Argentina; Cátedra de Microbiología, Parasitología e Inmunología, Facultad de Medicina, Universidad Nacional del Nordeste, Corrientes, Argentina.
| | - María L Gariboglio Vázquez
- Área de Bacteriología, Instituto de Medicina Regional, Universidad Nacional del Nordeste, Resistencia, Chaco, Argentina
| | - Marta Rivas
- Servicio Fisiopatogenia, Instituto Nacional de Enfermedades Infecciosas-ANLIS «Dr. Carlos G. Malbrán», Ciudad Autónoma de Buenos Aires, Argentina
| | - Luis A Merino
- Área de Bacteriología, Instituto de Medicina Regional, Universidad Nacional del Nordeste, Resistencia, Chaco, Argentina; Cátedra de Microbiología, Parasitología e Inmunología, Facultad de Medicina, Universidad Nacional del Nordeste, Corrientes, Argentina
| |
Collapse
|
25
|
Tymensen LD, Pyrdok F, Coles D, Koning W, McAllister TA, Jokinen CC, Dowd SE, Neumann NF. Comparative accessory gene fingerprinting of surface water Escherichia coli reveals genetically diverse naturalized population. J Appl Microbiol 2015; 119:263-77. [PMID: 25816691 DOI: 10.1111/jam.12814] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 03/16/2015] [Accepted: 03/20/2015] [Indexed: 12/16/2022]
Abstract
AIMS To utilize comparative accessory gene fingerprinting to discriminate between naturalized and faecal Escherichia coli, with particular emphasis on strains from phylogroup B1. METHODS AND RESULTS Fourteen accessory genes that were potentially ecotype-specific were selected on the basis of comparative genomic DNA sequence analysis between faecal and environmental strains and also using a literature-based strategy. PCR assays were designed for each gene, and used to screen 107 faecal strains from various hosts and 106 environmental strains from surface water and sediment. While none of the 14 accessory genes were ecotype-specific, six of the genes were ecotype-enriched. Specifically, toxin-antitoxin system genes were more abundant among faecal strains, whereas genes involved in iron acquisition, complement resistance/surface exclusion, and biofilm formation were more abundant among environmental strains. These six genes were used to form composite fingerprints which revealed the presence of several ecotype-specific and -enriched fingerprints. Notably, some of the environmental strain-specific or -enriched fingerprints consisted of strains putatively belonging to clade ET-1, which has been previously recognized as a naturalized subpopulation. CONCLUSIONS Unlike single genes which did not reliably distinguish between faecal and naturalized phylogroup B1 E. coli strains, composite fingerprints of ecotype-enriched accessory genes may offer a novel method for distinguishing between these two populations. SIGNIFICANCE AND IMPACT OF THE STUDY Accessory gene fingerprinting may have important practical implications for improving the specificity of methods that are widely used for quantifying and identifying the sources of faecal contamination in surface water.
Collapse
Affiliation(s)
- L D Tymensen
- Alberta Agriculture and Rural Development, Lethbridge, AB, Canada
| | - F Pyrdok
- Umwelt-und Ingenieurtechnik GmbH, Dresden, Germany
| | - D Coles
- Alberta Agriculture and Rural Development, Lethbridge, AB, Canada
| | - W Koning
- Alberta Environment and Sustainable Resource Development, Calgary, AB, Canada
| | - T A McAllister
- Agriculture and Agri-Food Canada, Lethbridge, AB, Canada
| | - C C Jokinen
- Alberta Agriculture and Rural Development, Lethbridge, AB, Canada
| | - S E Dowd
- Molecular Research LP, Shallowater, TX, USA
| | - N F Neumann
- Department of Public Health Sciences, University of Alberta, Edmonton, AB, Canada
| |
Collapse
|
26
|
Ahmed W, Gyawali P, Toze S. Quantitative PCR measurements of Escherichia coli including shiga toxin-producing E. coli (STEC) in animal feces and environmental waters. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:3084-3090. [PMID: 25648758 DOI: 10.1021/es505477n] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Quantitative PCR (qPCR) assays were used to determine the concentrations of E. coli including shiga toxin-producing E. coli (STEC) associated virulence genes (eaeA, stx1, stx2, and hlyA) in ten animal species (fecal sources) and environmental water samples in Southeast Queensland, Australia. The mean Log10 concentrations and standard deviations of E. coli 23S rRNA across fecal sources ranged from 1.3 ± 0.1 (horse) to 6.3 ± 0.4 (cattle wastewater) gene copies at a test concentration of 10 ng of DNA. The differences in mean concentrations of E. coli 23S rRNA gene copies among fecal source samples were significantly different from each other (P < 0.0001). Among the virulence genes, stx2 (25%, 95% CI, 17-33%) was most prevalent among fecal sources, followed by eaeA (19%, 95% CI, 12-27%), stx1 (11%, 95% CI, 5%-17%) and hlyA (8%, 95% CI, 3-13%). The Log10 concentrations of STEC virulence genes in cattle wastewater samples ranged from 3.8 to 5.0 gene copies at a test concentration of 10 ng of DNA. Of the 18 environmental water samples tested, three (17%) were positive for eaeA and two (11%) samples were also positive for the stx2 virulence genes. The data presented in this study will aid in the estimation of quantitative microbial risk assessment (QMRA) from fecal pollution of domestic and wild animals in drinking/recreational water catchments.
Collapse
Affiliation(s)
- W Ahmed
- CSIRO Land and Water, Ecosciences Precinct , 41 Boggo Road, Brisbane, Queensland 4102, Australia
| | | | | |
Collapse
|
27
|
Pathogenic potential, genetic diversity, and population structure of Escherichia coli strains isolated from a forest-dominated watershed (Comox Lake) in British Columbia, Canada. Appl Environ Microbiol 2014; 81:1788-98. [PMID: 25548059 DOI: 10.1128/aem.03738-14] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Escherichia coli isolates (n = 658) obtained from drinking water intakes of Comox Lake (2011 to 2013) were screened for the following virulence genes (VGs): stx1 and stx2 (Shiga toxin-producing E. coli [STEC]), eae and the adherence factor (EAF) gene (enteropathogenic E. coli [EPEC]), heat-stable (ST) enterotoxin (variants STh and STp) and heat-labile enterotoxin (LT) genes (enterotoxigenic E. coli [ETEC]), and ipaH (enteroinvasive E. coli [EIEC]). The only genes detected were eae and stx2, which were carried by 37.69% (n = 248) of the isolates. Only eae was harbored by 26.74% (n = 176) of the isolates, representing potential atypical EPEC strains, while only stx2 was detected in 10.33% (n = 68) of the isolates, indicating potential STEC strains. Moreover, four isolates were positive for both the stx2 and eae genes, representing potential EHEC strains. The prevalence of VGs (eae or stx2) was significantly (P < 0.0001) higher in the fall season, and multiple genes (eae plus stx2) were detected only in fall. Repetitive element palindromic PCR (rep-PCR) fingerprint analysis of 658 E. coli isolates identified 335 unique fingerprints, with an overall Shannon diversity (H') index of 3.653. Diversity varied among seasons over the years, with relatively higher diversity during fall. Multivariate analysis of variance (MANOVA) revealed that the majority of the fingerprints showed a tendency to cluster according to year, season, and month. Taken together, the results indicated that the diversity and population structure of E. coli fluctuate on a temporal scale, reflecting the presence of diverse host sources and their behavior over time in the watershed. Furthermore, the occurrence of potentially pathogenic E. coli strains in the drinking water intakes highlights the risk to human health associated with direct and indirect consumption of untreated surface water.
Collapse
|
28
|
Rebello RCDL, Regua-Mangia AH. Potential enterovirulence and antimicrobial resistance in Escherichia coli isolates from aquatic environments in Rio de Janeiro, Brazil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014; 490:19-27. [PMID: 24840276 DOI: 10.1016/j.scitotenv.2014.04.040] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Revised: 04/10/2014] [Accepted: 04/10/2014] [Indexed: 06/03/2023]
Abstract
Escherichia coli contamination in aquatic ecosystems has emerged as a relevant concern of public health impact, especially in developing areas. In this study, E. coli isolates were recovered from residential, industrial, agricultural, hospital wastewaters and recreational waters and, further characterized according to diarrheagenic potential, phylotyping and antimicrobial resistance phenotype. Among the total 178 E. coli isolates, antimicrobial resistance was detected in 37% to at least one of the 11 antimicrobials tested. The highest percentage of resistant E. coli was recovered from agricultural wastewaters (57.7%) followed by recreational waters (56.4%), hospital (34.5%), residential (22.7%) and industrial wastewaters (22.2%). Twenty-three resistance profiles (I-XXIII) were detected and 17 isolates exhibited the MDR phenotype. 11.2% of the total E. coli isolates carried diarrheagenic markers: astA (7.3%, 13/178), stx1 (2.8%, 05/178), escV (2.2%, 04/178) and estIa (0.6%, 01/178). All isolates harbored the uidA gene. E. coli isolates were mostly found in phylogenetic groups A (91.6%, 163/178) followed by groups D (5%, 09/178) and B2 (3.4%, 06/178). Specific gene combinations characterized E. coli pathotypes as ETEC (01/20), ATEC (04/20) and STEC (05/20) which belonged to A (75%, 15/20), D (15%, 03/20) and B2 (10%, 02/20) phylogroups. Our results revealed the widespread distribution of E. coli in aquatic systems in Rio de Janeiro. The circulation of pathogenic E. coli and antimicrobial resistance within bacterial population represents high risk to ecosystem and human health and highlights epidemiological surveillance and sanitary improvement.
Collapse
Affiliation(s)
- Raquel Costa de Luca Rebello
- Departamento de Ciências Biológicas, Escola Nacional de Saúde Pública Sergio Arouca (ENSP), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil
| | - Adriana Hamond Regua-Mangia
- Departamento de Ciências Biológicas, Escola Nacional de Saúde Pública Sergio Arouca (ENSP), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil.
| |
Collapse
|
29
|
Pavankumar AR, Norén J, Singh L, Chandappa Gowda NK. Scaling-up the production of recombinant Moringa oleifera coagulant protein for large-scale water treatment applications. RSC Adv 2014. [DOI: 10.1039/c3ra46654j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Scaling-up the production of Moringa oleifera coagulant protein to industrial level reveals it multiple advantages over the usage of chemical disinfectants and serves as a natural remedy for water treatment processes.
Collapse
Affiliation(s)
- Asalapuram Ramachandran Pavankumar
- Department of Industrial Biotechnology
- School of Biotechnology
- Royal Institute of Technology (KTH)
- 10691 Stockholm, Sweden
- Lab4Life Bio-Research Private Limited
| | - Johan Norén
- Department of Industrial Biotechnology
- School of Biotechnology
- Royal Institute of Technology (KTH)
- 10691 Stockholm, Sweden
| | - Lakhvinder Singh
- Department of Industrial Biotechnology
- School of Biotechnology
- Royal Institute of Technology (KTH)
- 10691 Stockholm, Sweden
| | | |
Collapse
|
30
|
Piorkowski G, Jamieson R, Bezanson G, Hansen LT, Yost C. Evaluation of statistical models for predicting Escherichia coli particle attachment in fluvial systems. WATER RESEARCH 2013; 47:6701-6711. [PMID: 24075474 DOI: 10.1016/j.watres.2013.09.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 08/12/2013] [Accepted: 09/01/2013] [Indexed: 06/02/2023]
Abstract
Modeling surface water Escherichia coli fate and transport requires partitioning E. coli into particle-attached and unattached fractions. Attachment is often assumed to be a constant fraction or is estimated using simple linear models. The objectives of this study were to: (i) develop statistical models for predicting E. coli attachment and virulence marker presence in fluvial systems, and (ii) relate E. coli attachment to a variety of environmental parameters. Stream water samples (n = 60) were collected at four locations in a rural, mixed-use watershed between June and October 2012, with four storm events (>20 mm rainfall) being captured. The percentage of E. coli attached to particles (>5 μm) and the occurrences of virulence markers were modeled using water quality, particle concentration, particle size distribution, hydrology and land use factors as explanatory variables. Three types of statistical models appropriate for highly collinear, multidimensional data were compared: least angle shrinkage and selection operator (LASSO), classification and regression trees using the general, unbiased, interaction detection and estimation (GUIDE) algorithm, and multivariate adaptive regression splines (MARS). All models showed that E. coli particle attachment and the presence of E. coli virulence markers in the attached and unattached states were influenced by a combination of water quality, hydrology, land-use and particle properties. Model performance statistics indicate that MARS models outperform LASSO and GUIDE models for predicting E. coli particle attachment and virulence marker occurrence. Validating the MARS modeling approach in multiple watersheds may allow for the development of a parameterizing model to be included in watershed simulation models.
Collapse
Affiliation(s)
- Gregory Piorkowski
- Department of Process Engineering and Applied Science, Dalhousie University, 1360 Barrington St., Halifax, NS, Canada B3H 4R2.
| | | | | | | | | |
Collapse
|
31
|
Diallo AA, Brugère H, Kérourédan M, Dupouy V, Toutain PL, Bousquet-Mélou A, Oswald E, Bibbal D. Persistence and prevalence of pathogenic and extended-spectrum beta-lactamase-producing Escherichia coli in municipal wastewater treatment plant receiving slaughterhouse wastewater. WATER RESEARCH 2013; 47:4719-4729. [PMID: 23774186 DOI: 10.1016/j.watres.2013.04.047] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2013] [Revised: 04/09/2013] [Accepted: 04/24/2013] [Indexed: 06/02/2023]
Abstract
We compared the prevalence of pathogenic and extended-spectrum beta-lactamase (ESBL) - producing Escherichia coli in effluents of a municipal wastewater treatment plant (WWTP) receiving wastewater from a slaughterhouse. A total of 1248 isolates were screened for the presence of virulence genes associated with enterohemorrhagic E. coli (EHEC) (stx1, stx2, and eae) and extraintestinal pathogenic E. coli (ExPEC) (sfa/focDE, kpsMT K1, hlyA, papEF, afa/draBC, clbN, f17A and cnf). The prevalence of atypical enteropathogenic E. coli (EPEC) was 0.7%, 0.2% and 0.5% in city wastewater, slaughterhouse wastewater and in the treated effluent, respectively. One stx1a and stx2b-positive E. coli isolate was detected in city wastewater. The prevalence of ExPEC was significantly higher in city wastewater (8.4%), compared to slaughterhouse wastewater (1.2%). Treatment in the WWTP did not significantly impact the prevalence of ExPEC in the outlet effluent (5.0%) compared to city wastewater. Moreover, the most potentially pathogenic ExPEC were isolated from city wastewater and from the treated effluent. ESBL-producing E. coli was also mainly detected in city wastewater (1.7%), compared to slaughterhouse wastewater (0.2%), and treated effluent (0.2%). One ESBL-producing E. coli, isolated from city wastewater, was eae-β1 positive. These results showed that pathogenic and/or ESBL-producing E. coli were mainly detected in human wastewater, and at a lesser extend in animal wastewater. Treatment failed to eliminate these strains which were discharged into the river, and then these strains could be transmitted to animals and humans via the environment.
Collapse
|
32
|
Evidence for coexistence of distinct Escherichia coli populations in various aquatic environments and their survival in estuary water. Appl Environ Microbiol 2013; 79:4684-93. [PMID: 23728810 DOI: 10.1128/aem.00698-13] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Escherichia coli, a commensal bacterium from the intestinal tracts of humans and vertebrate animals, has been used as one of two bacterial indicators of fecal contamination, along with intestinal enterococci, to monitor the microbiological quality of water. However, water environments are now recognized as a secondary habitat where some strains can survive. We investigated the survival of E. coli isolates collected from bodies of water in France exhibiting distinct profiles of contamination, defined according to the following criteria: vicinity of the point sources of contamination, land use, hydrology, and physicochemical characteristics of the receiving water. We selected 88 E. coli strains among a collection of 352 strains to carry out a microcosm experiment in filtered estuarine water for 14 days at 10°C. The relationship between the survival of E. coli strains and genotypic and phenotypic characteristics was analyzed. This work showed that distinct E. coli survival types, able to survive from between 7 and 14 days to less than 2 days, coexisted in the water. E. coli isolates that rapidly lost their culturability were more frequently isolated in water recently contaminated by fecal bacteria of human origin, and most were multiresistant to antibiotics and harbored several virulence factors. In contrast, persistent strains able to survive from 4 to 14 days were more often found in water with low levels of fecal bacteria, belonged mainly to the B1 phylogroup, often harbored only one virulence factor, kspE or ompT, and were able to grow at 7°C.
Collapse
|
33
|
Janezic KJ, Ferry B, Hendricks EW, Janiga BA, Johnson T, Murphy S, Roberts ME, Scott SM, Theisen AN, Hung KF, Daniel SL. Phenotypic and Genotypic Characterization of Escherichia coli Isolated from Untreated Surface Waters. Open Microbiol J 2013; 7:9-19. [PMID: 23539437 PMCID: PMC3606946 DOI: 10.2174/1874285801307010009] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 01/28/2013] [Accepted: 01/30/2013] [Indexed: 11/22/2022] Open
Abstract
A common member of the intestinal microbiota in humans and animals is Escherichia coli. Based on the presence of virulence factors, E. coli can be potentially pathogenic. The focus of this study was to isolate E. coli from untreated surface waters (37 sites) in Illinois and Missouri and determine phenotypic and genotypic diversity among isolates. Water samples positive for fecal coliforms based on the Colisure® test were streaked directly onto Eosin Methylene Blue (EMB) agar (37°C) or transferred to EC broth (44.5°C). EC broth cultures producing gas were then streaked onto EMB agar. Forty-five isolates were identified as E. coli using API 20E and Enterotube II identification systems, and some phenotypic variation was observed in metabolism and fermentation. Antibiotic susceptibility of each isolate was also determined using the Kirby-Bauer Method. Differential responses to 10 antimicrobial agents were seen with 7, 16, 2, and 9 of the isolates resistant to ampicillin, cephalothin, tetracycline, and triple sulfonamide, respectively. All of the isolates were susceptible or intermediate to amoxicillin, ciprofloxacin, polymyxin B, gentamicin, imipenem, and nalidixic acid. Genotypic variation was assessed through multiplex Polymerase Chain Reaction for four virulence genes (stx1 and stx2 [shiga toxin], eaeA [intimin]; and hlyA [enterohemolysin]) and one housekeeping gene (uidA [β-D-glucuronidase]). Genotypic variation was observed with two of the isolates possessing the virulence gene (eaeA) for intimin. These findings increase our understanding of the diversity of E. coli in the environment which will ultimately help in the assessment of this organism and its role in public health.
Collapse
Affiliation(s)
- Kristopher J Janezic
- Department of Biological Sciences, Eastern Illinois University, Charleston, Illinois 61920, USA
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
34
|
Frigon D, Biswal BK, Mazza A, Masson L, Gehr R. Biological and physicochemical wastewater treatment processes reduce the prevalence of virulent Escherichia coli. Appl Environ Microbiol 2013; 79:835-44. [PMID: 23160132 PMCID: PMC3568565 DOI: 10.1128/aem.02789-12] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2012] [Accepted: 11/13/2012] [Indexed: 12/25/2022] Open
Abstract
Effluents discharged from wastewater treatment plants are possible sources of pathogenic bacteria, including Escherichia coli, in the freshwater environment, and determining the possible selection of pathogens is important. This study evaluated the impact of activated sludge and physicochemical wastewater treatment processes on the prevalence of potentially virulent E. coli. A total of 719 E. coli isolates collected from four municipal plants in Québec before and after treatment were characterized by using a customized DNA microarray to determine the impact of treatment processes on the frequency of specific pathotypes and virulence genes. The percentages of potentially pathogenic E. coli isolates in the plant influents varied between 26 and 51%, and in the effluents, the percentages were 14 to 31%, for a reduction observed at all plants ranging between 14 and 45%. Pathotypes associated with extraintestinal pathogenic E. coli (ExPEC) were the most abundant at three of the four plants and represented 24% of all isolates, while intestinal pathogenic E. coli pathotypes (IPEC) represented 10% of the isolates. At the plant where ExPEC isolates were not the most abundant, a large number of isolates were classified as both ExPEC and IPEC; overall, 6% of the isolates were classified in both groups, with the majority being from the same plant. The reduction of the proportion of pathogenic E. coli could not be explained by the preferential loss of one virulence gene or one type of virulence factor; however, the quinolone resistance gene (qnrS) appears to enhance the loss of virulence genes, suggesting a mechanism involving the loss of pathogenicity islands.
Collapse
Affiliation(s)
- Dominic Frigon
- Department of Civil Engineering and Applied Mechanics, McGill University, Montréal, Québec, Canada.
| | | | | | | | | |
Collapse
|
35
|
Occurrence of virulence genes associated with Diarrheagenic pathotypes in Escherichia coli isolates from surface water. Appl Environ Microbiol 2012; 79:328-35. [PMID: 23124225 DOI: 10.1128/aem.02888-12] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Escherichia coli isolates (n = 300) collected from six sites in subtropical Brisbane, Australia, prior to and after storm events were tested for the presence of 11 virulence genes (VGs) specific to diarrheagenic pathotypes. The presence of eaeA, stx(1), stx(2), and ehxA genes specific for the enterohemorrhagic E. coli (EHEC) pathotype was detected in 56%, 6%, 10%, and 13% of isolates, respectively. The VGs astA (69%) and aggR (29%), carried by enteroaggregative (EAEC) pathotypes, were frequently detected in E. coli isolates. The enteropathogenic E. coli (EPEC) gene bfp was detected in 24% of isolates. In addition, enteroinvasive E. coli (EIEC) VG ipaH was also detected in 14% of isolates. During dry periods, isolates belonging to the EAEC pathotype were most commonly detected (23%), followed by EHEC (11%) and EPEC (11%). Conversely, a more uniform prevalence of pathotypes, EPEC (14%), EAEC (12%), EIEC (10%), EHEC (7%), and ETEC (7%), was observed after the storm events. The results of this study highlight the widespread occurrence of potentially diarrheagenic pathotypes in the urban aquatic ecosystems. While the presence of VGs in E. coli isolates alone is insufficient to determine pathogenicity, the presence of diarrheagenic E. coli pathotypes in high frequency after the storm events could lead to increased health risks if untreated storm water were to be used for nonpotable purposes and recreational activities.
Collapse
|
36
|
Pathogenic Escherichia coli found in sewage treatment plants and environmental waters. Appl Environ Microbiol 2012; 78:5536-41. [PMID: 22660714 DOI: 10.1128/aem.00657-12] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We previously demonstrated that some Escherichia coli strains with uropathogenic properties survived treatment stages of sewage treatment plants (STPs), suggesting that they may be released into the environment. We investigated the presence of such strains in the surrounding environmental waters of four STPs from which these persistent strains were isolated. In all, 264 E. coli isolates were collected from 129 receiving water sites in a 20-km radius surrounding STPs. We also included 93 E. coli strains collected from 18 animal species for comparison. Isolates were typed using a high-resolution biochemical fingerprinting method (the PhPlate system), and grouped into common (C) types. One hundred forty-seven (56%) environmental isolates were identical to strains found in STPs' final effluents. Of these, 140 (95%) carried virulence genes (VGs) associated with intestinal pathogenic E. coli (IPEC) or uropathogenic E. coli (UPEC) and were found in a variety of sites within areas sampled. Of the remaining 117 environmental strains not identical to STP strains, 105 belonged to 18 C types and 102 of them carried VGs found among IPEC or UPEC strains. These strains belonged mainly to phylogenetic groups A (A0 and A1) and B1 and to a lesser extent B2(2), B2(3), D1, and D2. Eight of 18 environmental C types, comprising 50 isolates, were also identical to bird strains. The presence of a high percentage of environmental E. coli in waters near STPs carrying VGs associated with IPEC and UPEC suggests that they may have derived from STP effluents and other nonpoint sources.
Collapse
|