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Xia A, Wu Y. Joint interactions of carbon and nitrogen metabolism dominated by bicarbonate and nitrogen in Orychophragmus violaceus and Brassica napus under simulated karst habitats. BMC PLANT BIOLOGY 2022; 22:264. [PMID: 35619072 PMCID: PMC9134658 DOI: 10.1186/s12870-022-03646-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 05/11/2022] [Indexed: 06/15/2023]
Abstract
Karst habitats are uniquely characterized by high bicarbonate, high nitrate, and low ammonium, which are in-conducive to their growth and biodiversity. The occurrence of inorganic carbon and nitrogen in karst soil profoundly affects the carbon/nitrogen metabolism and adaptability of plants. However, there has been no final conclusion to the joint interactions of carbon and nitrogen metabolism in plants under karst habitats. In this study, we selected a karst-adaptable plant Orychophragmus violaceus (Ov), and a non-karst-adaptable plant Brassica napus (Bn) as experimental plants, and compared their joint effects of carbon and nitrogen metabolism under simulated karst habitats. It was found that the two species had different joint effects of carbon and nitrogen metabolisms. Bicarbonate and nitrate joint promoted photosynthetic activity and glucose metabolism, facilitating the carbon/nitrogen metabolism and growth of Ov, but their impacts on the carbon and nitrogen metabolism were insignificant in Bn. Bicarbonate and ammonium joint inhibited the photosynthesis and nitrogen metabolism, but promoted water use efficiency in Ov, leading to its enhance of growth reduction, ammonium toxicity alleviation, and drought resistance, while they inhibited the water use efficiency of Bn. In general, bicarbonate and nitrate/ammonium more significantly joint affected the carbon and nitrogen metabolism in Ov than Bn, which is vital for Ov to adapt to karst habitats.
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Affiliation(s)
- Antong Xia
- Research Center for Environmental Bio-Science and Technology, State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, 550081 Guiyang, P.R. China
- University of Chinese Academy of Sciences, Beijing, 100049 People’s Republic of China
| | - Yanyou Wu
- Research Center for Environmental Bio-Science and Technology, State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, 550081 Guiyang, P.R. China
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Clinton M, Król E, Sepúlveda D, Andersen NR, Brierley AS, Ferrier DEK, Hansen PJ, Lorenzen N, Martin SAM. Gill Transcriptomic Responses to Toxin-producing Alga Prymnesium parvum in Rainbow Trout. Front Immunol 2021; 12:794593. [PMID: 34956228 PMCID: PMC8693183 DOI: 10.3389/fimmu.2021.794593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 11/19/2021] [Indexed: 11/24/2022] Open
Abstract
The gill of teleost fish is a multifunctional organ involved in many physiological processes, including protection of the mucosal gill surface against pathogens and other environmental antigens by the gill-associated lymphoid tissue (GIALT). Climate change associated phenomena, such as increasing frequency and magnitude of harmful algal blooms (HABs) put extra strain on gill function, contributing to enhanced fish mortality and fish kills. However, the molecular basis of the HAB-induced gill injury remains largely unknown due to the lack of high-throughput transcriptomic studies performed on teleost fish in laboratory conditions. We used juvenile rainbow trout (Oncorhynchus mykiss) to investigate the transcriptomic responses of the gill tissue to two (high and low) sublethal densities of the toxin-producing alga Prymnesium parvum, in relation to non-exposed control fish. The exposure time to P. parvum (4–5 h) was sufficient to identify three different phenotypic responses among the exposed fish, enabling us to focus on the common gill transcriptomic responses to P. parvum that were independent of dose and phenotype. The inspection of common differentially expressed genes (DEGs), canonical pathways, upstream regulators and downstream effects pointed towards P. parvum-induced inflammatory response and gill inflammation driven by alterations of Acute Phase Response Signalling, IL-6 Signalling, IL-10 Signalling, Role of PKR in Interferon Induction and Antiviral Response, IL-8 Signalling and IL-17 Signalling pathways. While we could not determine if the inferred gill inflammation was progressing or resolving, our study clearly suggests that P. parvum blooms may contribute to the serious gill disorders in fish. By providing insights into the gill transcriptomic responses to toxin-producing P. parvum in teleost fish, our research opens new avenues for investigating how to monitor and mitigate toxicity of HABs before they become lethal.
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Affiliation(s)
- Morag Clinton
- School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom.,Scottish Oceans Institute, University of St Andrews, St Andrews, United Kingdom.,Department of Veterinary Medicine, University of Alaska Fairbanks, Fairbanks, AK, United States
| | - Elżbieta Król
- School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Dagoberto Sepúlveda
- National Institute of Aquatic Resources, Technical University of Denmark, Kgs. Lyngby, Denmark
| | | | - Andrew S Brierley
- Scottish Oceans Institute, University of St Andrews, St Andrews, United Kingdom
| | - David E K Ferrier
- Scottish Oceans Institute, University of St Andrews, St Andrews, United Kingdom
| | - Per Juel Hansen
- Department of Biology, Marine Biological Section, University of Copenhagen, Helsingør, Denmark
| | - Niels Lorenzen
- National Institute of Aquatic Resources, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Samuel A M Martin
- School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom
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Liu Z, Jones AC, Campbell V, Hambright KD, Heidelberg KB, Caron DA. Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. Front Microbiol 2015; 6:319. [PMID: 25941521 PMCID: PMC4403553 DOI: 10.3389/fmicb.2015.00319] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Accepted: 03/30/2015] [Indexed: 12/25/2022] Open
Abstract
The mixotrophic prymnesiophyte, Prymnesium parvum, is a widely distributed alga with significant ecological importance. It produces toxins and can form ecosystem disruptive blooms that result in fish kills and changes in planktonic food web structure. However, the relationship between P. parvum and its prey on the molecular level is poorly understood. In this study, we used RNA-Seq technology to study changes in gene transcription of P. parvum in three treatments with different microbial populations available as potential prey: axenic P. parvum (no prey), bacterized P. paruvm, and axenic P. parvum with ciliates added as prey. Thousands of genes were differentially expressed among the three treatments. Most notably, transcriptome data indicated that P. parvum obtained organic carbon, including fatty acids, from both bacteria and ciliate prey for energy and cellular building blocks. The data also suggested that different prey provided P. parvum with macro- and micro-nutrients, namely organic nitrogen in the form of amino acids from ciliates, and iron from bacteria. However, both transcriptomic data and growth experiments indicated that P. parvum did not grow faster in the presence of prey despite the gains in nutrients, although algal abundances attained in culture were slightly greater in the presence of prey. The relationship between phototrophy, heterotrophy and growth of P. parvum is discussed.
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Affiliation(s)
- Zhenfeng Liu
- Department of Biological Sciences, University of Southern CaliforniaLos Angeles, CA, USA
| | - Adriane C. Jones
- Department of Biological Sciences, University of Southern CaliforniaLos Angeles, CA, USA
| | - Victoria Campbell
- Department of Biological Sciences, University of Southern CaliforniaLos Angeles, CA, USA
| | - K. David Hambright
- Program in Ecology and Evolutionary Biology, Department of Biology, University of OklahomaNorman, OK, USA
| | - Karla B. Heidelberg
- Department of Biological Sciences, University of Southern CaliforniaLos Angeles, CA, USA
| | - David A. Caron
- Department of Biological Sciences, University of Southern CaliforniaLos Angeles, CA, USA
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