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Hazra A, Ghosh S, Naskar S, Rahaman P, Roy C, Kundu A, Chaudhuri RK, Chakraborti D. Global transcriptome analysis reveals fungal disease responsive core gene regulatory landscape in tea. Sci Rep 2023; 13:17186. [PMID: 37821523 PMCID: PMC10567763 DOI: 10.1038/s41598-023-44163-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/04/2023] [Indexed: 10/13/2023] Open
Abstract
Fungal infections are the inevitable limiting factor for productivity of tea. Transcriptome reprogramming recruits multiple regulatory pathways during pathogen infection. A comprehensive meta-analysis was performed utilizing previously reported, well-replicated transcriptomic datasets from seven fungal diseases of tea. The study identified a cumulative set of 18,517 differentially expressed genes (DEGs) in tea, implicated in several functional clusters, including the MAPK signaling pathway, transcriptional regulation, and the biosynthesis of phenylpropanoids. Gene set enrichment analyses under each pathogen stress elucidated that DEGs were involved in ethylene metabolism, secondary metabolism, receptor kinase activity, and various reactive oxygen species detoxification enzyme activities. Expressional fold change of combined datasets highlighting 2258 meta-DEGs shared a common transcriptomic response upon fungal stress in tea. Pervasive duplication events caused biotic stress-responsive core DEGs to appear in multiple copies throughout the tea genome. The co-expression network of meta-DEGs in multiple modules demonstrated the coordination of appropriate pathways, most of which involved cell wall organization. The functional coordination was controlled by a number of hub genes and miRNAs, leading to pathogenic resistance or susceptibility. This first-of-its-kind meta-analysis of host-pathogen interaction generated consensus candidate loci as molecular signatures, which can be associated with future resistance breeding programs in tea.
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Affiliation(s)
- Anjan Hazra
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Sanatan Ghosh
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Sudipta Naskar
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Piya Rahaman
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Chitralekha Roy
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Anirban Kundu
- Plant Genomics and Bioinformatics Laboratory, P.G. Department of Botany, Ramakrishna Mission Vivekananda Centenary College (Autonomous), Rahara, Kolkata, 700118, India
| | | | - Dipankar Chakraborti
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
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Zhang Y, Zhang Q, Wang Y, Lin S, Chen M, Cheng P, Wang Y, Du M, Jia X, Wang H, Ye J. Effects of Magnesium on Transcriptome and Physicochemical Index of Tea Leaves. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12091810. [PMID: 37176867 PMCID: PMC10181054 DOI: 10.3390/plants12091810] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 04/25/2023] [Accepted: 04/26/2023] [Indexed: 05/15/2023]
Abstract
Magnesium (Mg) is one of the essential elements for the growth of tea tree and is extremely important for its development. In this study, we investigated the effect of Mg on the transcriptome and physicochemical indexes of tea leaves, and the results showed that Mg could significantly affect the gene expression of tea leaves. The results of Orthogonal Partial Least-Squares Discriminant Analysis (OPLS-DA) model analysis showed that a total of 300 key genes (Variable Importance for the Projection, VIP > 1) were screened under different concentrations of Mg treatment, among which 140 genes were up-regulated and 160 genes were down-regulated. The bubble map was used to screen the characteristic genes from the above key genes, and a total of 121 representative characteristic genes were obtained, mainly involving 9 metabolic pathways. Among them, gene expression of three metabolic pathways, including porphyrin metabolism, alpha-linolenic acid metabolism and photosynthesis, showed an increasing trend with the increase of Mg concentration, while gene expression of four metabolic pathways, including biosynthesis of secondary metabolites, anthocyanin biosynthesis, ABC transporters, pentose and glucuronate interconversions, showed a decreasing trend. The results of physiological index analysis showed that with the increase of Mg concentration, the photosynthetic physiological index, theanine and soluble sugar content of tea leaves showed an increasing trend, while the content of tea polyphenol, flavone and caffeine showed a decreasing trend. The results of TOPSIS analysis showed that the physiological indexes of tea trees most affected by Mg were chlorophyll, tea polyphenols and flavonoids, while the metabolic pathways most affected by Mg on gene expression were the metabolic pathways and biosynthesis of secondary metabolites. It can be seen that the effects of Mg on tea tree were mainly related to photosynthesis and synthesis of secondary metabolites, and Mg was beneficial for improving the photosynthetic capacity of tea tree, enhancing the accumulation of primary metabolites, and thus increasing tea yield. However, Mg was not conducive to the synthesis of secondary metabolites of tea tree and the accumulation of main quality indexes of tea leaves.
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Affiliation(s)
- Ying Zhang
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Qi Zhang
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
| | - Yuhua Wang
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shaoxiong Lin
- College of Life Science, Longyan University, Longyan 364012, China
| | - Meihui Chen
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Pengyuan Cheng
- College of Life Science, Longyan University, Longyan 364012, China
| | - Yuchao Wang
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Mengru Du
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
| | - Xiaoli Jia
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
| | - Haibin Wang
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
| | - Jianghua Ye
- College of Tea and Food, Wuyi University, Wuyishan 354300, China
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Zhao S, Cheng H, Xu P, Wang Y. Regulation of biosynthesis of the main flavor-contributing metabolites in tea plant ( Camellia sinensis): A review. Crit Rev Food Sci Nutr 2022; 63:10520-10535. [PMID: 35608014 DOI: 10.1080/10408398.2022.2078787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
In the process of adapting to the environment, tea plants (Camellia sinensis) endow tea with unique flavor and health functions, which should be attributed to secondary metabolites, including catechins, L-theanine, caffeine and terpene volatiles. Since the content of these flavor-contributing metabolites are mainly determined by the growth of tea plant, it is very important to understand their alteration and regulation mechanisms. In the present work, we first summarize the distribution, change characteristics of the main flavor-contributing metabolites in different cultivars, organs and under environmental stresses of tea plant. Subsequently, we discuss the regulating mechanisms involved in the biosynthesis of these metabolites based on the existing evidence. Finally, we propose the remarks and perspectives on the future study relating flavor-contributing metabolites. This review would contribute to the acceleration of research on the characteristic secondary metabolites and the breeding programs in tea plants.
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Affiliation(s)
- Shiqi Zhao
- Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Haiyan Cheng
- Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Ping Xu
- Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Yuefei Wang
- Tea Research Institute, Zhejiang University, Hangzhou, China
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Can Nanofertilizers Mitigate Multiple Environmental Stresses for Higher Crop Productivity? SUSTAINABILITY 2022. [DOI: 10.3390/su14063480] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The global food production for the worldwide population mainly depends on the huge contributions of the agricultural sector. The cultivated crops of foods need various elements or nutrients to complete their growth, and these are indirectly consumed by humans. During this production, several environmental constraints or stresses may cause losses in the global agricultural production. These obstacles may include abiotic and biotic stresses, which have already been studied in both individual and combined cases. However, there are very few studies on multiple stresses. On the basis of the myriad benefits of nanotechnology in agriculture, nanofertilizers (or nanonutrients) have become promising tools for agricultural sustainability. Nanofertilizers are also the proper solution to overcoming the environmental and health problems that can result from conventional fertilizers. The role of nanofertilizers has increased, especially under different environmental stresses, which can include individual, combined, and multiple stresses. The stresses are most commonly the result of nature; however, studies are still needed on the different stress levels. Nanofertilizers can play a crucial role in supporting cultivated plants under stress and in improving the plant yield, both quantitatively and qualitatively. Similar to other biological issues, many open-ended questions still require further investigation: Is the right time and era for nanofertilizers in agriculture? Will the nanofertilizers be the dominant source of nutrients in modern agriculture? Are nanofertilizers, and particularly biological synthesized ones, the magic solution for sustainable agriculture? What are the expected damages of multiple stresses on plants?
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Zhang H, Yang D, Wang P, Zhang X, Ding Z, Zhao L. Feedback Inhibition Might Dominate the Accumulation Pattern of BR in the New Shoots of Tea Plants ( Camellia sinensis). Front Genet 2022; 12:809608. [PMID: 35273632 PMCID: PMC8902050 DOI: 10.3389/fgene.2021.809608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 12/28/2021] [Indexed: 11/15/2022] Open
Abstract
Brassinosteroid (BR), a kind of polyhydroxylated steroid hormone, plays an important role in physiological and biochemical processes in plants. Studies were mainly focused on BR signaling and its exogenous spraying to help enhance crop yields. Few research studies are centered on the accumulation pattern of BR and its mechanism. Yet, it is crucial to unlock the mystery of the function of BR and its cross action with other hormones. Tea (Camellia sinensis (L.) O. Kuntze) is one of the important economic crops in some countries, and new shoots are the raw materials for the preparation of various tea products. Different concentrations of exogenous BR were reported to have different effects on growth and development. New shoots of tea plants can thus be considered a valuable research object to study the accumulation pattern of BR. In this study, the quantity of five BR components (brassinolide, 28-norbrassinolide, 28-homobrassinolide, castasterone, and 28-norcastasterone) in different tissues of tea plants, including buds (Bud), different maturity of leaves (L1, L2), and stems (S1, S2) were determined by UPLC-MS/MS. A total of 15 cDNA libraries of the same tissue with three repetitions for each were constructed and sequenced. The BR-accumulation pattern and gene expression pattern were combined together for weighted gene co-expression network analysis (WGCNA). BR-accumulation-relative genes were then screened using two methods, based on the K.in value and BR biosynthetic pathway (ko00905), respectively. The result showed that photosynthesis-related genes and CYP450 family genes were actively involved and might play important roles in BR accumulation and/or its accumulation pattern. First and foremost, feedback inhibition was more likely to dominate the accumulation pattern of BR in the new shoots of tea plants. Moreover, three conserved miRNAs with their target transcriptional factors and target mRNAs had been figured out from negative correlation modules that might be strongly linked to the BR-accumulation pattern. Our study provided an experimental basis for the role of BR in tea plants. The excavation of genes related to the accumulation pattern of BR provided the possibility of cross-action studies on the regulation of BR biosynthesis and the study between BR and other hormones.
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Affiliation(s)
- Hanghang Zhang
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
| | - Dong Yang
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
| | - Peiqiang Wang
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
| | - Xinfu Zhang
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
| | - Zhaotang Ding
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
| | - Lei Zhao
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
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