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Lubbe P, Rawlence NJ, Kardailsky O, Robertson BC, Day R, Knapp M, Dussex N. Mitogenomes resolve the phylogeography and divergence times within the endemic New Zealand Callaeidae (Aves: Passerida). Zool J Linn Soc 2022. [DOI: 10.1093/zoolinnean/zlac060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Abstract
The biogeographical origins of the endemic birds of New Zealand (Aotearoa) are of great interest, particularly Palaeogene lineages such as Callaeidae, a passerine family characterized by brightly coloured wattles behind the beak and, in some cases, extreme sexual dimorphism in bill size and shape. Ancestral representatives of Callaeidae are thought to have split from their closest relatives outside New Zealand in the Oligocene, but little is known about the timing of divergences within the family. We present a fully dated molecular phylogeny of Callaeidae mitogenomes and discuss the biogeographical implications. Our results suggest that formation of Pliocene marine seaways, such as the Manawatu Strait, are likely to have played a significant role in the differentiation of North Island and South Island kōkako (Callaeas spp.) and saddlebacks/tīeke (Philesturnus spp.).
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Affiliation(s)
- Pascale Lubbe
- Department of Anatomy, University of Otago , Dunedin , New Zealand
| | - Nicolas J Rawlence
- Otago Palaeogenetics Laboratory, Department of Zoology, University of Otago , Dunedin , New Zealand
| | - Olga Kardailsky
- Department of Anatomy, University of Otago , Dunedin , New Zealand
| | - Bruce C Robertson
- Otago Palaeogenetics Laboratory, Department of Zoology, University of Otago , Dunedin , New Zealand
| | - Robert Day
- Department of Biochemistry, School of Biomedical Sciences, University of Otago , Dunedin , New Zealand
| | - Michael Knapp
- Department of Anatomy, University of Otago , Dunedin , New Zealand
- Coastal People, Southern Skies Centre of Research Excellence, University of Otago , Dunedin , New Zealand
| | - Nicolas Dussex
- Swedish Museum of Natural History, Centre for Palaeogenetics (CPG) , Svante Arrhenius väg, Stockholm , Sweden
- Department of Bioinformatics and Genetics, Swedish Museum of Natural History , Stockholm , Sweden
- Department of Zoology, Stockholm University , Stockholm , Sweden
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2
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Shepherd L, Simon C, Langton-Myers S, Morgan-Richards M. Insights into Aotearoa New Zealand’s biogeographic history provided by the study of natural hybrid zones. J R Soc N Z 2022. [DOI: 10.1080/03036758.2022.2061020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Lara Shepherd
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
| | - Chris Simon
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
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3
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Bryer MAH, Koopman SE, Cantlon JF, Piantadosi ST, MacLean EL, Baker JM, Beran MJ, Jones SM, Jordan KE, Mahamane S, Nieder A, Perdue BM, Range F, Stevens JR, Tomonaga M, Ujfalussy DJ, Vonk J. The evolution of quantitative sensitivity. Philos Trans R Soc Lond B Biol Sci 2022; 377:20200529. [PMID: 34957840 PMCID: PMC8710878 DOI: 10.1098/rstb.2020.0529] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
The ability to represent approximate quantities appears to be phylogenetically widespread, but the selective pressures and proximate mechanisms favouring this ability remain unknown. We analysed quantity discrimination data from 672 subjects across 33 bird and mammal species, using a novel Bayesian model that combined phylogenetic regression with a model of number psychophysics and random effect components. This allowed us to combine data from 49 studies and calculate the Weber fraction (a measure of quantity representation precision) for each species. We then examined which cognitive, socioecological and biological factors were related to variance in Weber fraction. We found contributions of phylogeny to quantity discrimination performance across taxa. Of the neural, socioecological and general cognitive factors we tested, cortical neuron density and domain-general cognition were the strongest predictors of Weber fraction, controlling for phylogeny. Our study is a new demonstration of evolutionary constraints on cognition, as well as of a relation between species-specific neuron density and a particular cognitive ability. This article is part of the theme issue ‘Systems neuroscience through the lens of evolutionary theory’.
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Affiliation(s)
- Margaret A H Bryer
- Department of Psychology, Carnegie Mellon University, Pittsburgh, PA 15213, USA.,Department of Psychology, University of California-Berkeley, Berkeley, CA 94720, USA
| | - Sarah E Koopman
- School of Psychology and Neuroscience, University of St. Andrews, St Andrews KY16 9AJ, UK
| | - Jessica F Cantlon
- Department of Psychology, Carnegie Mellon University, Pittsburgh, PA 15213, USA
| | - Steven T Piantadosi
- Department of Psychology, University of California-Berkeley, Berkeley, CA 94720, USA
| | - Evan L MacLean
- School of Anthropology, University of Arizona, Tucson, AZ 85719, USA.,College of Veterinary Medicine, University of Arizona, Tucson, AZ 85719, USA
| | - Joseph M Baker
- Center for Interdisciplinary Brain Sciences Research, Division of Brain Sciences, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA
| | - Michael J Beran
- Department of Psychology and Language Research Center, Georgia State University, Atlanta, GA 30302, USA
| | - Sarah M Jones
- Psychology Program, Berea College, Berea, KY 40403, USA
| | - Kerry E Jordan
- Department of Psychology, Utah State University, Logan, UT 84322, USA
| | - Salif Mahamane
- Behavioral and Social Sciences Department, Western Colorado University, Gunnison, CO 81231, USA
| | - Andreas Nieder
- Animal Physiology Unit, Institute of Neurobiology, University of Tübingen, Tübingen 72076, Germany
| | - Bonnie M Perdue
- Department of Psychology, Agnes Scott College, Decatur, GA 30030, USA
| | - Friederike Range
- Domestication Lab, Konrad Lorenz Institute of Ethology, Department of Interdisciplinary Life Sciences, University of Veterinary Medicine Vienna, Savoyenstrasse 1a, Vienna 1160, Austria
| | - Jeffrey R Stevens
- Department of Psychology and Center for Brain, Biology and Behavior, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | | | - Dorottya J Ujfalussy
- MTA-ELTE Comparative Ethology Research Group, Eötvös Loránd University of Sciences (ELTE), Budapest 1117, Hungary.,Department of Ethology, Eötvös Loránd University of Sciences (ELTE), Budapest 1117, Hungary
| | - Jennifer Vonk
- Department of Psychology, Oakland University, Rochester, MI 48309, USA
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4
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Withers SJ, Parsons S, Hauber ME, Kendrick A, Lavery SD. Genetic divergence between isolated populations of the North Island New Zealand Rifleman ( Acanthisitta chloris granti) implicates ancient biogeographic impacts rather than recent habitat fragmentation. Ecol Evol 2021; 11:5998-6014. [PMID: 34141198 PMCID: PMC8207446 DOI: 10.1002/ece3.7358] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2020] [Revised: 12/26/2020] [Accepted: 01/04/2021] [Indexed: 11/25/2022] Open
Abstract
This research investigates the extent and causal mechanisms of genetic population divergence in a poorly flighted passerine, the North Island Rifleman or Titipounamu (Acanthisitta chloris granti). While this species has a historically widespread distribution, anthropogenic forest clearance has resulted in a highly fragmented current distribution. We conducted analyses of mitochondrial DNA (COI and Control Region) and 12 nuclear DNA microsatellites to test for population divergence and estimate times of divergence. diyabc and biogeobears were then used to assess likely past dispersal scenarios based on both mtDNA and nDNA. The results reveal several significantly divergent lineages across the North Island of New Zealand and indicate that some populations have been isolated for extensive periods of time (0.7-4.9 mya). Modeling indicated a dynamic history of population connectivity, with a drastic restriction in gene flow between three geographic regions, followed by a more recent re-establishment of connectivity. Our analyses indicate the dynamic influence of key geological and climatological events on the distribution of genetic diversity in this species, including support for the genetic impact of old biogeographic boundaries such as the Taupo Line and Cockayne's Line, rather than recent anthropogenic habitat fragmentation. These findings present a rare example of an avian species with a genetic history more like that of flightless taxa and so provide new general insights into vicariant processes affecting populations of passerines with limited dispersal.
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Affiliation(s)
- Sarah J. Withers
- School of Biological SciencesPrivate Bag 92019Auckland Mail CentreThe University of AucklandAucklandNew Zealand
| | - Stuart Parsons
- School of Biological SciencesPrivate Bag 92019Auckland Mail CentreThe University of AucklandAucklandNew Zealand
- School of Biology and Environmental ScienceQueensland University of TechnologyBrisbaneQLDAustralia
| | - Mark E. Hauber
- Department of Evolution, Ecology, and BehaviorSchool of Integrative BiologyUniversity of IllinoisUrbana‐ChampaignILUSA
| | - Alistair Kendrick
- School of Biological SciencesPrivate Bag 92019Auckland Mail CentreThe University of AucklandAucklandNew Zealand
| | - Shane D. Lavery
- Institute of Marine SciencePrivate Bag 92019Auckland Mail CentreThe University of AucklandAucklandNew Zealand
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5
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Valente L, Etienne RS, Garcia-R JC. Deep Macroevolutionary Impact of Humans on New Zealand's Unique Avifauna. Curr Biol 2020; 29:2563-2569.e4. [PMID: 31386837 DOI: 10.1016/j.cub.2019.06.058] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 05/06/2019] [Accepted: 06/20/2019] [Indexed: 11/27/2022]
Abstract
Islands are at the frontline of the anthropogenic extinction crisis [1]. A vast number of island birds have gone extinct since human colonization [2], and an important proportion is currently threatened with extinction [3]. While the number of lost or threatened avian species has often been quantified [4], the macroevolutionary consequences of human impact on island biodiversity have rarely been measured [5]. Here, we estimate the amount of evolutionary time that has been lost or is under threat due to anthropogenic activity in a classic example, New Zealand. Half of its bird taxa have gone extinct since humans arrived [6, 7] and many are threatened [8], including lineages forming highly distinct branches in the avian tree of life [9-11]. Using paleontological and ancient DNA information, we compiled a dated phylogenetic dataset for New Zealand's terrestrial avifauna. We extend the method DAISIE developed for island biogeography [12] to allow for the fact that many of New Zealand's birds are evolutionarily isolated and use it to estimate natural rates of speciation, extinction, and colonization. Simulating under a range of human-induced extinction scenarios, we find that it would take approximately 50 million years (Ma) to recover the number of species lost since human colonization of New Zealand and up to 10 Ma to return to today's species numbers if currently threatened species go extinct. This study puts into macroevolutionary perspective the impact of humans in an isolated fauna and reveals how conservation decisions we take today will have repercussions for millions of years.
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Affiliation(s)
- Luis Valente
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, 10115 Berlin, Germany; Naturalis Biodiversity Center, Understanding Evolution Group, Darwinweg 2, 2333 CR Leiden, the Netherlands; University of Groningen, Groningen Institute for Evolutionary Life Sciences, P.O. Box 11103, 9700 CC Groningen, the Netherlands.
| | - Rampal S Etienne
- University of Groningen, Groningen Institute for Evolutionary Life Sciences, P.O. Box 11103, 9700 CC Groningen, the Netherlands
| | - Juan C Garcia-R
- Hopkirk Research Institute, School of Veterinary Science, Massey University, Private Bag, 11 222, Palmerston North 4442, New Zealand
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6
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Verry AJF, Scarsbrook L, Scofield RP, Tennyson AJD, Weston KA, Robertson BC, Rawlence NJ. Who, Where, What, Wren? Using Ancient DNA to Examine the Veracity of Museum Specimen Data: A Case Study of the New Zealand Rock Wren (Xenicus gilviventris). Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00496] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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7
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Tizard J, Patel S, Waugh J, Tavares E, Bergmann T, Gill B, Norman J, Christidis L, Scofield P, Haddrath O, Baker A, Lambert D, Millar C. DNA barcoding a unique avifauna: an important tool for evolution, systematics and conservation. BMC Evol Biol 2019; 19:52. [PMID: 30744573 PMCID: PMC6369544 DOI: 10.1186/s12862-019-1346-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 01/02/2019] [Indexed: 12/02/2022] Open
Abstract
BACKGROUND DNA barcoding utilises a standardised region of the cytochrome c oxidase I (COI) gene to identify specimens to the species level. It has proven to be an effective tool for identification of avian samples. The unique island avifauna of New Zealand is taxonomically and evolutionarily distinct. We analysed COI sequence data in order to determine if DNA barcoding could accurately identify New Zealand birds. RESULTS We sequenced 928 specimens from 180 species. Additional Genbank sequences expanded the dataset to 1416 sequences from 211 of the estimated 236 New Zealand species. Furthermore, to improve the assessment of genetic variation in non-endemic species, and to assess the overall accuracy of our approach, sequences from 404 specimens collected outside of New Zealand were also included in our analyses. Of the 191 species represented by multiple sequences, 88.5% could be successfully identified by their DNA barcodes. This is likely a conservative estimate of the power of DNA barcoding in New Zealand, given our extensive geographic sampling. The majority of the 13 groups that could not be distinguished contain recently diverged taxa, indicating incomplete lineage sorting and in some cases hybridisation. In contrast, 16 species showed evidence of distinct intra-species lineages, some of these corresponding to recognised subspecies. For species identification purposes a character-based method was more successful than distance and phylogenetic tree-based methods. CONCLUSIONS DNA barcodes accurately identify most New Zealand bird species. However, low levels of COI sequence divergence in some recently diverged taxa limit the identification power of DNA barcoding. A small number of currently recognised species would benefit from further systematic investigations. The reference database and analysis presented will provide valuable insights into the evolution, systematics and conservation of New Zealand birds.
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Affiliation(s)
- Jacqueline Tizard
- School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand
| | - Selina Patel
- School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand
| | - John Waugh
- Unitec Institute of Technology, Auckland, New Zealand
| | - Erika Tavares
- Department of Natural History, Royal Ontario Museum, 100 Queen's Park, Toronto, Ontario, M5S 2C6, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcox Street, Toronto, Ontario, M5S 3B2, Canada
- Present address: Laboratory Research Project Manager, The Hospital for Sick Children, Toronto, Ontario, Canada
| | - Tjard Bergmann
- Institute for Animal Ecology and Cell Biology, University of Veterinary Medicine Hannover Foundation, Bünteweg 17d, D-30559, Hannover, Germany
| | - Brian Gill
- Associate Emeritus, Auckland War Memorial Museum, Private Bag 92018, Auckland, 1142, New Zealand
| | - Janette Norman
- Molecular Biology Sciences Department, Museum Victoria, GPO Box 666, Melbourne, Victoria, 3001, Australia
- Present address: Graduate School, Southern Cross University, Lismore, New South Wales, Australia
| | - Les Christidis
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
| | - Paul Scofield
- Canterbury Museum, Rolleston Ave, Christchurch, 8001, New Zealand
| | - Oliver Haddrath
- Department of Natural History, Royal Ontario Museum, 100 Queen's Park, Toronto, Ontario, M5S 2C6, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcox Street, Toronto, Ontario, M5S 3B2, Canada
| | - Allan Baker
- Department of Natural History, Royal Ontario Museum, 100 Queen's Park, Toronto, Ontario, M5S 2C6, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcox Street, Toronto, Ontario, M5S 3B2, Canada
| | - David Lambert
- Environmental Futures Research Institute, Griffith University, 170 Kessels Road, Brisbane, Queensland, 4111, Australia
| | - Craig Millar
- School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.
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8
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Kearns AM, Malloy JF, Gobbert MK, Thierry A, Joseph L, Driskell AC, Omland KE. Nuclear introns help unravel the diversification history of the Australo-Pacific Petroica robins. Mol Phylogenet Evol 2018; 131:48-54. [PMID: 30367975 DOI: 10.1016/j.ympev.2018.10.024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 10/15/2018] [Accepted: 10/18/2018] [Indexed: 11/16/2022]
Abstract
Australo-Pacific Petroica robins are known for their striking variability in sexual plumage coloration. Molecular studies in recent years have revised the taxonomy of species and subspecies boundaries across the southwest Pacific and New Guinea. However, these studies have not been able to resolve phylogenetic relationships within Petroica owing to limited sampling of the nuclear genome. Here, we sequence five nuclear introns across all species for which fresh tissue was available. Nuclear loci offer support for major geographic lineages that were first inferred from mtDNA. We find almost no shared nuclear alleles between currently recognized species within the New Zealand and Australian lineages, whereas the Pacific robin radiation has many shared alleles. Multilocus coalescent species trees based on nuclear loci support a sister relationship between the Australian lineage and the Pacific robin radiation-a node that is poorly supported by mtDNA. We also find discordance in support for a sister relationship between the similarly plumaged Rose Robin (P. rosea) and Pink Robin (P. rodinogaster). Our nuclear data complement previous mtDNA studies in suggesting that the phenotypically cryptic eastern and western populations of Australia's Scarlet Robin (P. boodang) are genetically distinct lineages at the early stages of divergence and speciation.
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Affiliation(s)
- Anna M Kearns
- University of Maryland, Baltimore County, Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA.
| | - John F Malloy
- University of Maryland, Baltimore County, Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA; University of Maryland, Baltimore County, Department of Mathematics and Statistics, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Matthias K Gobbert
- University of Maryland, Baltimore County, Department of Mathematics and Statistics, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Aude Thierry
- University of Canterbury, School of Biological Sciences, Christchurch 8041, New Zealand
| | - Leo Joseph
- Australian National Wildlife Collection, CSIRO National Research Collections Australia, GPO Box 1700, Canberra, ACT 2601, Australia
| | - Amy C Driskell
- Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20013, USA
| | - Kevin E Omland
- University of Maryland, Baltimore County, Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
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Trewick SA, Pilkington S, Shepherd LD, Gibb GC, Morgan-Richards M. Closing the gap: Avian lineage splits at a young, narrow seaway imply a protracted history of mixed population response. Mol Ecol 2017; 26:5752-5772. [PMID: 28805283 DOI: 10.1111/mec.14323] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2016] [Revised: 08/01/2017] [Accepted: 08/07/2017] [Indexed: 12/01/2022]
Abstract
The evolutionary significance of spatial habitat gaps has been well recognized since Alfred Russel Wallace compared the faunas of Bali and Lombok. Gaps between islands influence population structuring of some species, and flightless birds are expected to show strong partitioning even where habitat gaps are narrow. We examined the population structure of the most numerous living flightless land bird in New Zealand, Weka (Gallirallus australis). We surveyed Weka and their feather lice in native and introduced populations using genetic data gathered from DNA sequences of mitochondrial genes and nuclear β-fibrinogen and five microsatellite loci. We found low genetic diversity among extant Weka population samples. Two genetic clusters were evident in the mtDNA from Weka and their lice, but partitioning at nuclear loci was less abrupt. Many formerly recognized subspecies/species were not supported; instead, we infer one subspecies for each of the two main New Zealand islands. Although currently range restricted, North Island Weka have higher mtDNA diversity than the more wide-ranging southern Weka. Mismatch and neutrality statistics indicate North Island Weka experienced rapid and recent population reduction, while South Island Weka display the signature of recent expansion. Similar haplotype data from a widespread flying relative of Weka and other New Zealand birds revealed instances of North Island-South Island partitioning associated with a narrow habitat gap (Cook Strait). However, contrasting patterns indicate priority effects and other ecological factors have a strong influence on spatial exchange at this scale.
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Affiliation(s)
- Steve A Trewick
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
| | - Stephen Pilkington
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
| | - Lara D Shepherd
- Te Papa Tongarewa Museum of New Zealand, Wellington, New Zealand
| | - Gillian C Gibb
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
| | - Mary Morgan-Richards
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
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10
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Dussex N, Sainsbury J, Moorhouse R, Jamieson IG, Robertson BC. Evidence for Bergmann’s Rule and Not Allopatric Subspeciation in the Threatened Kaka ( Nestor meridionalis ). J Hered 2015; 106:679-91. [DOI: 10.1093/jhered/esv079] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 09/10/2015] [Indexed: 11/13/2022] Open
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11
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Norfolk Island Robins are a distinct endangered species: ancient DNA unlocks surprising relationships and phenotypic discordance within the Australo-Pacific Robins. CONSERV GENET 2015. [DOI: 10.1007/s10592-015-0783-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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12
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Assessment of hybridisation between the endangered Chatham Island black robin (Petroica traversi) and the Chatham Island tomtit (Petroica macrocephala chathamensis). CONSERV GENET 2015. [DOI: 10.1007/s10592-015-0778-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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13
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Weston KA, Robertson BC. Population structure within an alpine archipelago: strong signature of past climate change in the New Zealand rock wren (Xenicus gilviventris). Mol Ecol 2015; 24:4778-94. [DOI: 10.1111/mec.13349] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2014] [Revised: 08/07/2015] [Accepted: 08/17/2015] [Indexed: 11/28/2022]
Affiliation(s)
- K. A. Weston
- Department of Zoology; University of Otago; PO Box 56 Dunedin 9054 New Zealand
| | - B. C. Robertson
- Department of Zoology; University of Otago; PO Box 56 Dunedin 9054 New Zealand
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14
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Parker KA, Ludwig K, King TM, Brunton DH, Scofield RP, Jamieson IG. Differences in vocalisations, morphology and mtDNA support species status for New Zealand saddlebackPhilesturnusspp. NEW ZEALAND JOURNAL OF ZOOLOGY 2013. [DOI: 10.1080/03014223.2013.846922] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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15
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Townsend SM, Jamieson IG. Molecular and pedigree measures of relatedness provide similar estimates of inbreeding depression in a bottlenecked population. J Evol Biol 2013; 26:889-99. [DOI: 10.1111/jeb.12109] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Revised: 12/05/2012] [Accepted: 12/15/2012] [Indexed: 11/29/2022]
Affiliation(s)
- S. M. Townsend
- Allan Wilson Centre for Molecular Ecology and Evolution; Department of Zoology; University of Otago; Dunedin New Zealand
| | - I. G. Jamieson
- Allan Wilson Centre for Molecular Ecology and Evolution; Department of Zoology; University of Otago; Dunedin New Zealand
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16
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Holt BG, Lessard JP, Borregaard MK, Fritz SA, Araújo MB, Dimitrov D, Fabre PH, Graham CH, Graves GR, Jønsson KA, Nogués-Bravo D, Wang Z, Whittaker RJ, Fjeldså J, Rahbek C. An Update of Wallace’s Zoogeographic Regions of the World. Science 2012; 339:74-8. [PMID: 23258408 DOI: 10.1126/science.1228282] [Citation(s) in RCA: 516] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Modern attempts to produce biogeographic maps focus on the distribution of species, and the maps are typically drawn without phylogenetic considerations. Here, we generate a global map of zoogeographic regions by combining data on the distributions and phylogenetic relationships of 21,037 species of amphibians, birds, and mammals. We identify 20 distinct zoogeographic regions, which are grouped into 11 larger realms. We document the lack of support for several regions previously defined based on distributional data and show that spatial turnover in the phylogenetic composition of vertebrate assemblages is higher in the Southern than in the Northern Hemisphere. We further show that the integration of phylogenetic information provides valuable insight on historical relationships among regions, permitting the identification of evolutionarily unique regions of the world.
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Affiliation(s)
- Ben G Holt
- Center for Macroecology, Evolution, and Climate, Department of Biology, University of Copenhagen, 2100 Copenhagen Ø, Denmark
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17
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Townsend SM, King TM, Jamieson IG. Isolation and characterisation of microsatellite markers from the South Island robin (Petroica australis). CONSERV GENET RESOUR 2012. [DOI: 10.1007/s12686-012-9610-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Zuccon D, Ericson PG. Molecular and morphological evidences place the extinct New Zealand endemic Turnagra capensis in the Oriolidae. Mol Phylogenet Evol 2012; 62:414-26. [DOI: 10.1016/j.ympev.2011.10.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2011] [Revised: 09/24/2011] [Accepted: 10/17/2011] [Indexed: 11/29/2022]
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19
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Matysioková B, Cockburn A, Remeš V. Male incubation feeding in songbirds responds differently to nest predation risk across hemispheres. Anim Behav 2011. [DOI: 10.1016/j.anbehav.2011.09.018] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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20
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Christidis L, Irestedt M, Rowe D, Boles WE, Norman JA. Mitochondrial and nuclear DNA phylogenies reveal a complex evolutionary history in the Australasian robins (Passeriformes: Petroicidae). Mol Phylogenet Evol 2011; 61:726-38. [DOI: 10.1016/j.ympev.2011.08.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2010] [Revised: 08/01/2011] [Accepted: 08/09/2011] [Indexed: 10/17/2022]
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Goldberg J, Trewick SA. Exploring Phylogeographic Congruence in a Continental Island System. INSECTS 2011; 2:369-99. [PMID: 26467734 PMCID: PMC4553550 DOI: 10.3390/insects2030369] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2011] [Revised: 07/04/2011] [Accepted: 07/11/2011] [Indexed: 11/23/2022]
Abstract
A prediction in phylogeographic studies is that patterns of lineage diversity and timing will be similar within the same landscape under the assumption that these lineages have responded to past environmental changes in comparable ways. Eight invertebrate taxa from four different orders were included in this study of mainland New Zealand and Chatham Islands lineages to explore outcomes of island colonization. These comprised two orthopteran genera, one an endemic forest-dwelling genus of cave weta (Rhaphidophoridae, Talitropsis) and the other a grasshopper (Acrididae, Phaulacridum) that inhabits open grassland; four genera of Coleoptera including carabid beetles (Mecodema), stag beetles (Geodorcus), weevils (Hadramphus) and clickbeetles (Amychus); the widespread earwig genus Anisolabis (Dermaptera) that is common on beaches in New Zealand and the Chatham Islands, and an endemic and widespread cockroach genus Celatoblatta (Blattodea). Mitochondrial DNA data were used to reconstruct phylogeographic hypotheses to compare among these taxa. Strikingly, despite a maximum age of the Chathams of ∼4 million years there is no concordance among these taxa, in the extent of genetic divergence and partitioning between Chatham and Mainland populations. Some Chatham lineages are represented by insular endemics and others by haplotypes shared with mainland populations. These diverse patterns suggest that combinations of intrinsic (taxon ecology) and extrinsic (extinction and dispersal) factors can result in apparently very different biogeographic outcomes.
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Affiliation(s)
- Julia Goldberg
- Phoenix Lab, Ecology Group, Institute of Natural Resources, Massey University, Private Bag 11-222, Palmerston North, New Zealand.
| | - Steven A Trewick
- Phoenix Lab, Ecology Group, Institute of Natural Resources, Massey University, Private Bag 11-222, Palmerston North, New Zealand.
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Bradley DW, Ninnes CE, Valderrama SV, Waas JR. Does 'acoustic anchoring' reduce post-translocation dispersal of North Island robins? WILDLIFE RESEARCH 2011. [DOI: 10.1071/wr10173] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Context
Animal translocations are an important conservation tool; however, post-release dispersal can hinder successful population establishment. Playback of conspecific song attracts dispersing individuals in some species, although its application following animal translocation has yet to be rigorously investigated.
Aims
To determine whether conspecific song can be used as an ‘acoustic anchor’, we adopted an experimental approach during the translocation of 60 North Island robins (Petroica longipes).
Methods
At one of two release locations, we broadcast song at natural rates from four speakers (4 h per morning), for 9 days following release; we set the second release location as a control where identical conditions were established but no playback occurred. To assess the impact of playback, we monitored speaker and control locations, surveyed tracks around the release areas, and radio-tracked robins over nine playback days and an additional 9 days.
Key results
Most robins left both immediate release areas; however, our results showed that (1) more robins (6 birds on 14 of the 18 days), in particular females (3 birds), approached the playback location than the ‘flagged’ control location (3 male birds on 5 of the 18 days), (2) individual robins returned to the playback location repeatedly, unlike those at the control site, and (3) robins also visited the playback location longer after playback than they did silent control locations. In contrast, radio-telemetry data from five robins suggested that general dispersal was not influenced by playback. Two radio-tracked females moved over long distances (some to >3 km from their release location), whereas two radio-tracked males remained relatively close to the release sites.
Conclusions
We demonstrated a short-term attraction effect of playback over a period of several weeks for some birds, particularly females. In contrast, we detected fewer birds over a shorter period at the silent control release site, where no females were detected. However, long-term monitoring at both sites suggested that the effect of playback on reducing post-release dispersal was transitory.
Implications
The lack of a clear and lasting effect of acoustic anchoring on dispersal in the present study has provided information on the limited utility of song playback as a conservation management tool for this species. Consideration of the species’ ecology and suitability for ‘acoustic anchoring’ must be made before playback is employed as a conservation measure to reduce excess post-translocation dispersal.
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Laws RJ, Jamieson IG. Is lack of evidence of inbreeding depression in a threatened New Zealand robin indicative of reduced genetic load? Anim Conserv 2010. [DOI: 10.1111/j.1469-1795.2010.00388.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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ANDERSON MICHAELG, ROSS HOWARDA, BRUNTON DIANNEH, HAUBER MARKE. Begging call matching between a specialist brood parasite and its host: a comparative approach to detect coevolution. Biol J Linn Soc Lond 2009. [DOI: 10.1111/j.1095-8312.2009.01256.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Morgan‐Richards M, Smissen RD, Shepherd LD, Wallis GP, Hayward JJ, Chan C, Chambers GK, Chapman HM. A review of genetic analyses of hybridisation in New Zealand. J R Soc N Z 2009. [DOI: 10.1080/03014220909510561] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Liggins L, Chapple DG, Daugherty CH, Ritchie PA. Origin and post-colonization evolution of the Chatham Islands skink (Oligosoma nigriplantare nigriplantare). Mol Ecol 2008; 17:3290-305. [PMID: 18564090 DOI: 10.1111/j.1365-294x.2008.03832.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Island ecosystems provide an opportunity to examine a range of evolutionary and ecological processes. The Chatham Islands are an isolated archipelago situated approximately 800 km east of New Zealand. Geological evidence indicates that the Chatham Islands re-emerged within the last 1-4 million years, following a prolonged period of marine inundation, and therefore the resident flora and fauna is the result of long-distance overwater dispersal. We examine the origin and post-colonization evolution of the Chatham Islands skink, Oligosoma nigriplantare nigriplantare, the sole reptile species occurring on the archipelago. We sampled O. n. nigriplantare from across nine islands within the Chatham Islands group, and representative samples from across the range of its closest relative, the New Zealand mainland common skink (Oligosoma nigriplantare polychroma). Our mitochondrial sequence data indicate that O. n. nigriplantare diverged from O. n. polychroma 5.86-7.29 million years ago. This pre-dates the emergence date for the Chatham Islands, but indicates that O. n. nigriplantare colonized the Chatham Islands via overwater dispersal on a single occasion. Despite the substantial morphological variability evident in O. n. nigriplantare, only relatively shallow genetic divergences (maximum divergence approximately 2%) were found across the Chatham Islands. Our analyses (haplotypic diversity, Phi(ST), analysis of molecular variance, and nested clade phylogeographical analysis) indicated restricted gene flow in O. n. nigriplantare resulting in strong differentiation between islands. However, the restrictions to gene flow might have only arisen recently as there was also a significant pattern of isolation by distance, possibly from when the Chatham Islands were a single landmass during Pleistocene glacial maxima when sea levels were lower. The level of genetic and morphological divergence between O. n. nigriplantare and O. n. polychroma might warrant their recognition as distinct species.
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Affiliation(s)
- Libby Liggins
- Allan Wilson Centre for Molecular Ecology and Evolution, School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington 6140, New Zealand
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Worthy TH, Tennyson AJD, Hand SJ, Scofield RP. A new species of the diving duckManuherikiaand evidence for geese (Aves: Anatidae: Anserinae) in the St Bathans Fauna (Early Miocene), New Zealand. J R Soc N Z 2008. [DOI: 10.1080/03014220809510549] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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