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For: Wicke S, Costa A, Muñoz J, Quandt D. Restless 5S: the re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants. Mol Phylogenet Evol 2011;61:321-32. [PMID: 21757016 DOI: 10.1016/j.ympev.2011.06.023] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Revised: 06/23/2011] [Accepted: 06/27/2011] [Indexed: 01/16/2023]
Number Cited by Other Article(s)
1
Volarić M, Despot-Slade E, Veseljak D, Pavlek M, Vojvoda Zeljko T, Mravinac B, Meštrović N. The Genome Organization of 5S rRNA Genes in the Model Organism Tribolium castaneum and Its Sibling Species Tribolium freemani. Genes (Basel) 2024;15:776. [PMID: 38927712 PMCID: PMC11202950 DOI: 10.3390/genes15060776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 06/07/2024] [Accepted: 06/11/2024] [Indexed: 06/28/2024]  Open
2
Chen G, Stepanenko A, Borisjuk N. Contrasting patterns of 5S rDNA repeats in European and Asian ecotypes of greater duckweed, Spirodela polyrhiza (Lemnaceae). FRONTIERS IN PLANT SCIENCE 2024;15:1378683. [PMID: 38711607 PMCID: PMC11070557 DOI: 10.3389/fpls.2024.1378683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 04/09/2024] [Indexed: 05/08/2024]
3
Liu J, Lin X, Wang X, Feng L, Zhu S, Tian R, Fang J, Tao A, Fang P, Qi J, Zhang L, Huang Y, Xu J. Genomic and cytogenetic analyses reveal satellite repeat signature in allotetraploid okra (Abelmoschus esculentus). BMC PLANT BIOLOGY 2024;24:71. [PMID: 38267860 PMCID: PMC10809672 DOI: 10.1186/s12870-024-04739-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 01/10/2024] [Indexed: 01/26/2024]
4
Sasaki M, Kobayashi T. Regulatory processes that maintain or alter ribosomal DNA stability during the repair of programmed DNA double-strand breaks. Genes Genet Syst 2023;98:103-119. [PMID: 35922917 DOI: 10.1266/ggs.22-00046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
5
Wang W, Zhang X, Garcia S, Leitch AR, Kovařík A. Intragenomic rDNA variation - the product of concerted evolution, mutation, or something in between? Heredity (Edinb) 2023;131:179-188. [PMID: 37402824 PMCID: PMC10462631 DOI: 10.1038/s41437-023-00634-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 06/12/2023] [Accepted: 06/12/2023] [Indexed: 07/06/2023]  Open
6
Garcia S, Pascual-Díaz JP, Krumpolcová A, Kovarík A. Analysis of 5S rDNA Genomic Organization Through the RepeatExplorer2 Pipeline: A Simplified Protocol. Methods Mol Biol 2023;2672:501-512. [PMID: 37335496 DOI: 10.1007/978-1-0716-3226-0_30] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/21/2023]
7
Bartha L, Mandáková T, Kovařík A, Bulzu PA, Rodde N, Mahelka V, Lysak MA, Fustier MA, Šafář J, Cápal P, Keresztes L, Banciu HL. Intact ribosomal DNA arrays of Potentilla origin detected in Erythronium nucleus suggest recent eudicot-to-monocot horizontal transfer. THE NEW PHYTOLOGIST 2022;235:1246-1259. [PMID: 35460285 DOI: 10.1111/nph.18171] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 04/07/2022] [Indexed: 06/14/2023]
8
Orooji F, Mirzaghaderi G, Kuo YT, Fuchs J. Variation in the Number and Position of rDNA Loci Contributes to the Diversification and Speciation in Nigella (Ranunculaceae). FRONTIERS IN PLANT SCIENCE 2022;13:917310. [PMID: 35812971 PMCID: PMC9261981 DOI: 10.3389/fpls.2022.917310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
9
Hemleben V, Grierson D, Borisjuk N, Volkov RA, Kovarik A. Personal Perspectives on Plant Ribosomal RNA Genes Research: From Precursor-rRNA to Molecular Evolution. FRONTIERS IN PLANT SCIENCE 2021;12:797348. [PMID: 34992624 PMCID: PMC8724763 DOI: 10.3389/fpls.2021.797348] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 11/26/2021] [Indexed: 06/13/2023]
10
Goffová I, Fajkus J. The rDNA Loci-Intersections of Replication, Transcription, and Repair Pathways. Int J Mol Sci 2021;22:1302. [PMID: 33525595 PMCID: PMC7865372 DOI: 10.3390/ijms22031302] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 01/25/2021] [Accepted: 01/25/2021] [Indexed: 12/28/2022]  Open
11
He J, Lin S, Yu Z, Song A, Guan Z, Fang W, Chen S, Zhang F, Jiang J, Chen F, Wang H. Identification of 5S and 45S rDNA sites in Chrysanthemum species by using oligonucleotide fluorescence in situ hybridization (Oligo-FISH). Mol Biol Rep 2021;48:21-31. [PMID: 33454907 DOI: 10.1007/s11033-020-06102-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 12/16/2020] [Indexed: 12/13/2022]
12
Fehrer J, Slavíková R, Paštová L, Josefiová J, Mráz P, Chrtek J, Bertrand YJK. Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae). FRONTIERS IN PLANT SCIENCE 2021;12:647375. [PMID: 33777082 PMCID: PMC7994888 DOI: 10.3389/fpls.2021.647375] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Accepted: 02/19/2021] [Indexed: 05/14/2023]
13
Hoang PTN, Fiebig A, Novák P, Macas J, Cao HX, Stepanenko A, Chen G, Borisjuk N, Scholz U, Schubert I. Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries. Sci Rep 2020;10:19230. [PMID: 33154426 PMCID: PMC7645714 DOI: 10.1038/s41598-020-75728-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 10/13/2020] [Indexed: 11/16/2022]  Open
14
Havlová K, Fajkus J. G4 Structures in Control of Replication and Transcription of rRNA Genes. FRONTIERS IN PLANT SCIENCE 2020;11:593692. [PMID: 33133121 PMCID: PMC7579416 DOI: 10.3389/fpls.2020.593692] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 09/22/2020] [Indexed: 06/11/2023]
15
Sousa A, Bechteler J, Temsch EM, Renner SS. Different from tracheophytes, liverworts commonly have mixed 35S and 5S arrays. ANNALS OF BOTANY 2020;125:1057-1064. [PMID: 32064492 PMCID: PMC7262461 DOI: 10.1093/aob/mcaa027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 02/14/2020] [Indexed: 06/10/2023]
16
Matyášek R, Krumpolcová A, Lunerová J, Mikulášková E, Rosselló JA, Kovařík A. Unique Epigenetic Features of Ribosomal RNA Genes (rDNA) in Early Diverging Plants (Bryophytes). FRONTIERS IN PLANT SCIENCE 2019;10:1066. [PMID: 31543890 PMCID: PMC6739443 DOI: 10.3389/fpls.2019.01066] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Accepted: 08/06/2019] [Indexed: 05/03/2023]
17
Goffová I, Vágnerová R, Peška V, Franek M, Havlová K, Holá M, Zachová D, Fojtová M, Cuming A, Kamisugi Y, Angelis KJ, Fajkus J. Roles of RAD51 and RTEL1 in telomere and rDNA stability in Physcomitrella patens. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;98:1090-1105. [PMID: 30834585 DOI: 10.1111/tpj.14304] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 02/21/2019] [Accepted: 02/27/2019] [Indexed: 05/11/2023]
18
Renner S, Sousa dos Santos A. The organization of nuclear ribosomal DNA in gnetophytes - physically separate and physically linked arrangements of 35S and 5S genes. A commentary on: 'Remarkable variation of ribosomal DNA organization and copy number in gnetophytes, a distinct lineage of gymnosperms'. ANNALS OF BOTANY 2019;123:vi-vii. [PMID: 31106810 PMCID: PMC6526311 DOI: 10.1093/aob/mcz056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
19
Wang W, Wan T, Becher H, Kuderova A, Leitch IJ, Garcia S, Leitch AR, Kovařík A. Remarkable variation of ribosomal DNA organization and copy number in gnetophytes, a distinct lineage of gymnosperms. ANNALS OF BOTANY 2019;123:767-781. [PMID: 30265284 PMCID: PMC6526317 DOI: 10.1093/aob/mcy172] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 09/04/2018] [Indexed: 05/10/2023]
20
Tamayo-Ordóñez YJ, Narváez-Zapata JA, Tamayo-Ordóñez MC, Sánchez-Teyer LF. Retroelements and DNA Methylation Could Contribute to Diversity of 5S rDNA in Agave L. J Mol Evol 2018;86:404-423. [DOI: 10.1007/s00239-018-9856-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 07/03/2018] [Indexed: 01/21/2023]
21
Waminal NE, Pellerin RJ, Kim NS, Jayakodi M, Park JY, Yang TJ, Kim HH. Rapid and Efficient FISH using Pre-Labeled Oligomer Probes. Sci Rep 2018;8:8224. [PMID: 29844509 PMCID: PMC5974128 DOI: 10.1038/s41598-018-26667-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 05/17/2018] [Indexed: 12/29/2022]  Open
22
Marinho AC, Vasconcelos S, Vasconcelos EV, Marques DA, Benko-Iseppon AM, Brasileiro-Vidal AC. Karyotype and genome size comparative analyses among six species of the oilseed-bearing genus Jatropha (Euphorbiaceae). Genet Mol Biol 2018;41:442-449. [PMID: 29767665 PMCID: PMC6082239 DOI: 10.1590/1678-4685-gmb-2017-0120] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Accepted: 09/19/2017] [Indexed: 01/08/2023]  Open
23
Sochorová J, Garcia S, Gálvez F, Symonová R, Kovařík A. Evolutionary trends in animal ribosomal DNA loci: introduction to a new online database. Chromosoma 2018;127:141-150. [PMID: 29192338 PMCID: PMC5818627 DOI: 10.1007/s00412-017-0651-8] [Citation(s) in RCA: 87] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 11/06/2017] [Accepted: 11/07/2017] [Indexed: 11/24/2022]
24
Yu S, Lemos B. The long-range interaction map of ribosomal DNA arrays. PLoS Genet 2018;14:e1007258. [PMID: 29570716 PMCID: PMC5865718 DOI: 10.1371/journal.pgen.1007258] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2017] [Accepted: 02/15/2018] [Indexed: 11/28/2022]  Open
25
Bolsheva NL, Melnikova NV, Kirov IV, Speranskaya AS, Krinitsina AA, Dmitriev AA, Belenikin MS, Krasnov GS, Lakunina VA, Snezhkina AV, Rozhmina TA, Samatadze TE, Yurkevich OY, Zoshchuk SA, Amosova АV, Kudryavtseva AV, Muravenko OV. Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes. BMC Evol Biol 2017;17:253. [PMID: 29297314 PMCID: PMC5751768 DOI: 10.1186/s12862-017-1105-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
26
Sergeeva EM, Shcherban AB, Adonina IG, Nesterov MA, Beletsky AV, Rakitin AL, Mardanov AV, Ravin NV, Salina EA. Fine organization of genomic regions tagged to the 5S rDNA locus of the bread wheat 5B chromosome. BMC PLANT BIOLOGY 2017;17:183. [PMID: 29143604 PMCID: PMC5688495 DOI: 10.1186/s12870-017-1120-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
27
Higher-order organisation of extremely amplified, potentially functional and massively methylated 5S rDNA in European pikes (Esox sp.). BMC Genomics 2017;18:391. [PMID: 28521734 PMCID: PMC5437419 DOI: 10.1186/s12864-017-3774-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 05/09/2017] [Indexed: 12/16/2022]  Open
28
Garcia S, Kovařík A, Leitch AR, Garnatje T. Cytogenetic features of rRNA genes across land plants: analysis of the Plant rDNA database. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;89:1020-1030. [PMID: 27943584 DOI: 10.1111/tpj.13442] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Revised: 11/22/2016] [Accepted: 11/24/2016] [Indexed: 05/09/2023]
29
Yu S, Lemos B. A Portrait of Ribosomal DNA Contacts with Hi-C Reveals 5S and 45S rDNA Anchoring Points in the Folded Human Genome. Genome Biol Evol 2016;8:3545-3558. [PMID: 27797956 PMCID: PMC5203791 DOI: 10.1093/gbe/evw257] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
30
Milyutina IA, Ignatova EA, Ignatov MS, Goryunov DV, Troitsky AV. Structure of Intergenic Spacer IGS1 of Ribosomal Operon from Schistidium Mosses. BIOCHEMISTRY (MOSCOW) 2016;80:1485-91. [PMID: 26615440 DOI: 10.1134/s0006297915110103] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
31
Rosato M, Kovařík A, Garilleti R, Rosselló JA. Conserved Organisation of 45S rDNA Sites and rDNA Gene Copy Number among Major Clades of Early Land Plants. PLoS One 2016;11:e0162544. [PMID: 27622766 PMCID: PMC5021289 DOI: 10.1371/journal.pone.0162544] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 08/24/2016] [Indexed: 11/26/2022]  Open
32
Rubio-Piña J, Quiroz-Moreno A, Sánchez-Teyer LF. A quantitative PCR approach for determining the ribosomal DNA copy number in the genome of Agave tequila Weber. ELECTRON J BIOTECHN 2016. [DOI: 10.1016/j.ejbt.2016.05.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
33
Lewis LR, Liu Y, Rozzi R, Goffinet B. Infraspecific variation within and across complete organellar genomes and nuclear ribosomal repeats in a moss. Mol Phylogenet Evol 2015;96:195-199. [PMID: 26724407 DOI: 10.1016/j.ympev.2015.12.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2015] [Revised: 12/03/2015] [Accepted: 12/09/2015] [Indexed: 10/22/2022]
34
García-Souto D, Pasantes JJ. Molecular Cytogenetics in Digenean Parasites: Linked and Unlinked Major and 5S rDNAs, B Chromosomes and Karyotype Diversification. Cytogenet Genome Res 2015;147:195-207. [DOI: 10.1159/000442504] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/05/2015] [Indexed: 11/19/2022]  Open
35
Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, Lee HJ, Park JY, Perumal S, Jayakodi M, Lee YS, Kim B, Copetti D, Kim S, Kim S, Lim KB, Kim YD, Lee J, Cho KS, Park BS, Wing RA, Yang TJ. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Sci Rep 2015;5:15655. [PMID: 26506948 PMCID: PMC4623524 DOI: 10.1038/srep15655] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 09/30/2015] [Indexed: 12/15/2022]  Open
36
Hans M, Charpentier M, Huch V, Jauch J, Bruhn T, Bringmann G, Quandt D. Stereoisomeric Composition of Natural Myrtucommulone A. JOURNAL OF NATURAL PRODUCTS 2015;78:2381-2389. [PMID: 26457652 DOI: 10.1021/acs.jnatprod.5b00358] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
37
Kim K, Lee SC, Lee J, Lee HO, Joh HJ, Kim NH, Park HS, Yang TJ. Comprehensive Survey of Genetic Diversity in Chloroplast Genomes and 45S nrDNAs within Panax ginseng Species. PLoS One 2015;10:e0117159. [PMID: 26061692 PMCID: PMC4465672 DOI: 10.1371/journal.pone.0117159] [Citation(s) in RCA: 113] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Accepted: 04/28/2015] [Indexed: 11/18/2022]  Open
38
Garcia S, Gálvez F, Gras A, Kovařík A, Garnatje T. Plant rDNA database: update and new features. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2014;2014:bau063. [PMID: 24980131 PMCID: PMC4075780 DOI: 10.1093/database/bau063] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
39
Evolutionary dynamics of rDNA clusters in chromosomes of five clam species belonging to the family Veneridae (Mollusca, Bivalvia). BIOMED RESEARCH INTERNATIONAL 2014;2014:754012. [PMID: 24967400 PMCID: PMC4054880 DOI: 10.1155/2014/754012] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2014] [Revised: 04/23/2014] [Accepted: 04/25/2014] [Indexed: 11/26/2022]
40
Rebordinos L, Cross I, Merlo A. High evolutionary dynamism in 5S rDNA of fish: state of the art. Cytogenet Genome Res 2013;141:103-13. [PMID: 24080995 DOI: 10.1159/000354871] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
41
Beauparlant MA, Drouin G. Multiple independent insertions of 5S rRNA genes in the spliced-leader gene family of trypanosome species. Curr Genet 2013;60:17-24. [DOI: 10.1007/s00294-013-0404-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2013] [Revised: 08/16/2013] [Accepted: 08/22/2013] [Indexed: 11/21/2022]
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Systematic analysis and evolution of 5S ribosomal DNA in metazoans. Heredity (Edinb) 2013;111:410-21. [PMID: 23838690 DOI: 10.1038/hdy.2013.63] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2012] [Revised: 04/09/2013] [Accepted: 05/17/2013] [Indexed: 11/08/2022]  Open
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Mahelka V, Kopecký D, Baum BR. Contrasting Patterns of Evolution of 45S and 5S rDNA Families Uncover New Aspects in the Genome Constitution of the Agronomically Important Grass Thinopyrum intermedium (Triticeae). Mol Biol Evol 2013;30:2065-86. [DOI: 10.1093/molbev/mst106] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
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Dancing together and separate again: gymnosperms exhibit frequent changes of fundamental 5S and 35S rRNA gene (rDNA) organisation. Heredity (Edinb) 2013;111:23-33. [PMID: 23512008 PMCID: PMC3692318 DOI: 10.1038/hdy.2013.11] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
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Organellar genome, nuclear ribosomal DNA repeat unit, and microsatellites isolated from a small-scale of 454 GS FLX sequencing on two mosses. Mol Phylogenet Evol 2013;66:1089-94. [DOI: 10.1016/j.ympev.2012.12.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2012] [Revised: 11/30/2012] [Accepted: 12/06/2012] [Indexed: 11/19/2022]
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Matsunaga S, Katagiri Y, Nagashima Y, Sugiyama T, Hasegawa J, Hayashi K, Sakamoto T. New insights into the dynamics of plant cell nuclei and chromosomes. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2013;305:253-301. [PMID: 23890384 DOI: 10.1016/b978-0-12-407695-2.00006-8] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Drouin G, Tsang C. 5S rRNA Gene Arrangements in Protists: A Case of Nonadaptive Evolution. J Mol Evol 2012;74:342-51. [DOI: 10.1007/s00239-012-9512-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Accepted: 06/25/2012] [Indexed: 12/30/2022]
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Garcia S, Crhák Khaitová L, Kovařík A. Expression of 5 S rRNA genes linked to 35 S rDNA in plants, their epigenetic modification and regulatory element divergence. BMC PLANT BIOLOGY 2012;12:95. [PMID: 22716941 PMCID: PMC3409069 DOI: 10.1186/1471-2229-12-95] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Accepted: 06/20/2012] [Indexed: 05/09/2023]
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Early evolutionary colocalization of the nuclear ribosomal 5S and 45S gene families in seed plants: evidence from the living fossil gymnosperm Ginkgo biloba. Heredity (Edinb) 2012;108:640-6. [PMID: 22354111 DOI: 10.1038/hdy.2012.2] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
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Layat E, Sáez-Vásquez J, Tourmente S. Regulation of Pol I-transcribed 45S rDNA and Pol III-transcribed 5S rDNA in Arabidopsis. PLANT & CELL PHYSIOLOGY 2012;53:267-76. [PMID: 22173098 DOI: 10.1093/pcp/pcr177] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
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