1
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Carvalho CJBDE, Wolff M, Haseyama KLF, Fogaa JM. Review of the endemic Neotropical genus Agenamyia Albuquerque (Diptera: Muscidae) with the description of new species from South America. Zootaxa 2023; 5346:532-550. [PMID: 38221324 DOI: 10.11646/zootaxa.5346.5.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Indexed: 01/16/2024]
Abstract
Agenamyia Albuquerque, an endemic neotropical genus with two species, has been revised to include three new species: Agenamyia colombiana de Carvalho, Wolff & Fogaa sp. nov. from Envigado; Agenamyia maculata de Carvalho, Wolff & Fogaa sp. nov. from El Retiro; and Agenamyia timida de Carvalho, Wolff & Fogaa sp. nov. from Sopetrn, all localities in Antioquia, Colombia. This review presents an identification key for all species, including color images and illustrations of male and female terminalia. The distribution of all species is mapped and discussed.
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Affiliation(s)
| | - Marta Wolff
- Grupo de Entomologa; Universidad de Antioquia; Medelln; Colombia.
| | | | - Joo Manuel Fogaa
- Department of Zoology; Universidade Estadual do Mato Grosso; Tangar da Serra; Brazil.
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2
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Li X, Cai X, Ding S, Wang L, Li W, Liu X, Zhang C, Yang D. Phylogeny and Evolutionary Timescale of Muscidae (Diptera: Calyptratae) Inferred from Mitochondrial Genomes. INSECTS 2023; 14:286. [PMID: 36975971 PMCID: PMC10059281 DOI: 10.3390/insects14030286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 03/10/2023] [Accepted: 03/12/2023] [Indexed: 06/18/2023]
Abstract
House flies (Muscidae) comprise the most species-rich family of the muscoid grade with over 5000 described species worldwide, and they are abundant in various terrestrial and aquatic ecosystems. The high number of species, varied appearances, complex feeding habits, and wide distributions have hindered researchers from understanding their phylogeny and evolutionary history. Here, we newly sequenced fifteen mitochondrial genomes and reconstructed the phylogenetic relationships and divergence time among eight subfamilies of Muscidae (Diptera). The best phylogenetic tree, which was inferred by IQ-Tree, recovered the monophyly for seven out of eight subfamilies (except for Mydaeinae). Based on phylogenetic analyses and morphological characteristics, we prefer the subfamily status of Azeliinae and Reinwardtiinae, and separate Stomoxyinae from Muscinae. Genus Helina Robineau-Desvoidy, 1830 was synonymized with Phaonia Robineau-Desvoidy, 1830. The divergence time estimation indicated Muscidae originated at 51.59 Ma (early Eocene). Most subfamilies had originated around 41 Ma. We provided a mtgenomic viewpoint on the phylogenetic relationships and divergence time estimation of Muscidae.
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Affiliation(s)
- Xin Li
- College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Xiaodong Cai
- College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Shuangmei Ding
- The Institute of Scientific and Technical Research on Archives, National Archives Administration of China, Beijing 100050, China
| | - Liang Wang
- College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Wenliang Li
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China
| | - Xiaoyan Liu
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Chuntian Zhang
- College of Life Science, Shenyang Normal University, Shenyang 110034, China
| | - Ding Yang
- College of Plant Protection, China Agricultural University, Beijing 100193, China
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3
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Walczak K, Pape T, Ekanem M, Szpila K, Grzywacz A. Insights into the systematics of
Alluaudinella
and allied
Aethiopomyia
and
Ochromusca
(Muscidae, Diptera). ZOOL SCR 2023. [DOI: 10.1111/zsc.12584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Affiliation(s)
- Kinga Walczak
- Department of Ecology and Biogeography Nicolaus Copernicus University in Toruń Toruń Poland
- Centre for Modern Interdisciplinary Technologies Nicolaus Copernicus University in Toruń Toruń Poland
| | - Thomas Pape
- Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
| | - Mfon Ekanem
- Department of Zoology University of Uyo Uyo Nigeria
| | - Krzysztof Szpila
- Department of Ecology and Biogeography Nicolaus Copernicus University in Toruń Toruń Poland
| | - Andrzej Grzywacz
- Department of Ecology and Biogeography Nicolaus Copernicus University in Toruń Toruń Poland
- Centre for Modern Interdisciplinary Technologies Nicolaus Copernicus University in Toruń Toruń Poland
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4
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Gao Y, Ge Y, Yan L, Vikhrev NE, Wang Q, Butterworth NJ, Zhang D. Phylogenetic Analyses Support the Monophyly of the Genus Lispe Latreille (Diptera: Muscidae) with Insights into Intrageneric Relationships. INSECTS 2022; 13:1015. [PMID: 36354839 PMCID: PMC9697789 DOI: 10.3390/insects13111015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 10/17/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
Lispe Latreille (Diptera: Muscidae) are a widespread group of predatory flies that inhabit semi-aquatic environments. Previous studies on this genus have mainly focused on morphological classification, so molecular data are entirely lacking, and there has been no attempt at a phylogenetic placement of the genus or the resolution of intragenic relationships. To address the phylogenetic placement of Lispe and to fill its gap in the Tree of Life Web Project, 58 Lispe spp. (covering 11 out of 13 acknowledged Lispe species groups) were selected to reconstruct a phylogeny using Maximum likelihood (ML) estimates, Maximum Parsimony (MP) analyses, and Bayesian inference (BI) based on two mitochondrial protein-coding genes (cytochrome c oxidase subunit I (COXI) and cytochrome b gene (CYTB)) and one nuclear gene (a fragment of the carbamoyl phosphate synthetase region of the CAD gene). The phylogenetic analyses indicated that the monophyletic Lispe is the sister group of the monophyletic Limnophora, together forming the tribe Limnophorini under the subfamily Coenosiinae. Three generic categories are proven obsolete: Chaetolispa Malloch, Lispacoenosia Snyder, and Xenolispa Malloch. Within the genus, the validity of 11 species groups is clarified by both molecular and morphological data. This study provides a sound basis for continuing intergeneric and intrageneric research into this fascinating and widespread genus.
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Affiliation(s)
- Yunyun Gao
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Yingqiang Ge
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Liping Yan
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Nikita E. Vikhrev
- Zoological Museum of Moscow University, Bolshaya Nikitskaya 6, Moscow 125009, Russia
| | - Qike Wang
- School of BioSciences, The University of Melbourne, Melbourne, VIC 3010, Australia
| | | | - Dong Zhang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
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5
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Arellano AA, Sommer AJ, Coon KL. Beyond canonical models: why a broader understanding of Diptera-microbiota interactions is essential for vector-borne disease control. Evol Ecol 2022; 37:165-188. [PMID: 37153630 PMCID: PMC10162596 DOI: 10.1007/s10682-022-10197-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Vector-borne diseases constitute a major global public health threat. The most significant arthropod disease vectors are predominantly comprised of members of the insect order Diptera (true flies), which have long been the focus of research into host-pathogen dynamics. Recent studies have revealed the underappreciated diversity and function of dipteran-associated gut microbial communities, with important implications for dipteran physiology, ecology, and pathogen transmission. However, the effective parameterization of these aspects into epidemiological models will require a comprehensive study of microbe-dipteran interactions across vectors and related species. Here, we synthesize recent research into microbial communities associated with major families of dipteran vectors and highlight the importance of development and expansion of experimentally tractable models across Diptera towards understanding the functional roles of the gut microbiota in modulating disease transmission. We then posit why further study of these and other dipteran insects is not only essential to a comprehensive understanding of how to integrate vector-microbiota interactions into existing epidemiological frameworks, but our understanding of the ecology and evolution of animal-microbe symbiosis more broadly.
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Affiliation(s)
- Aldo A. Arellano
- Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI 53706, USA
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Andrew J. Sommer
- Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI 53706, USA
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Kerri L. Coon
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
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6
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Sorokina VS, Ovtshinnikova OG. The position of the Azeliinae in the Muscidae (Diptera) based on musculature of the male terminalia. Zookeys 2020; 975:87-110. [PMID: 33117066 PMCID: PMC7572540 DOI: 10.3897/zookeys.975.55502] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 08/27/2020] [Indexed: 01/23/2023] Open
Abstract
The male genital and pregenital skeleton and musculature were studied in males of the following species of the Muscidae subfamily Azeliinae: Drymeia firthiana (Huckett, 1965), Drymeia longiseta Sorokina & Pont, 2015, Drymeia segnis (Holmgren, 1883), Thricops nigritellus (Zetterstedt, 1838), Thricops hirtulus (Zetterstedt, 1838), Hydrotaea dentipes (Fabricius, 1805), Muscina stabulans (Fallén, 1817), and Muscina levida (Harris, 1780). Descriptions and figures of the genital sclerites and muscles of D. firthiana and M. stabulans are given. A comparison was made between the genital segments and muscles of previously studied species of Mydaeinae and Muscinae and those of the Azeliinae. Based on the structure of the skeleton and muscles of syntergosternite VII + VIII and the phallapodeme muscles, significant differences were found between the subfamily Azeliinae and the subfamilies Mydaeinae and Muscinae. The basal position of the Azeliinae within the family Muscidae was confirmed. A comparison of the genital segments and muscles of the Muscidae with those of the Scathophagidae (Scathophaga stercoraria (Linnaeus, 1758)) and Anthomyiidae (Delia platura (Meigen, 1826)) was made. Tendencies in reduction of the pregenital segments and musculature, as well as of the phallapodeme muscles in the evolution of the Muscoidea have been revealed. The complete set of phallapodeme muscles in the Scathophagidae and Anthomyiidae corresponds to the basal state, and therefore the structure of the genital sclerites and muscles in the Muscidae shows a certain degree of reduction. The progressive changes in the Muscidae from the Azeliinae through the Mydaeinae to the Muscinae were traced.
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Affiliation(s)
- Vera S. Sorokina
- Institute of Systematics and Ecology of Animals, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, 630091, RussiaInstitute of Systematics and Ecology of AnimalsNovosibirskRussia
| | - Olga G. Ovtshinnikova
- Zoological Institute, Russian Academy of Sciences, St. Petersburg, 199034, RussiaRussian Academy of SciencesSt. PetersburgRussia
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7
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Changbunjong T, Ruangsittichai J, Duvallet G, Pont AC. Molecular Identification and Geometric Morphometric Analysis of Haematobosca aberrans (Diptera: Muscidae). INSECTS 2020; 11:E451. [PMID: 32708722 PMCID: PMC7412132 DOI: 10.3390/insects11070451] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 07/08/2020] [Accepted: 07/13/2020] [Indexed: 11/17/2022]
Abstract
The genus Haematobosca Bezzi, 1907 (Diptera: Muscidae) contains haematophagous flies of veterinary importance. A new fly species of this genus was recognised from northern Thailand based on morphological characters and described as Haematobosca aberrans Pont, Duvallet & Changbunjong, 2020. In the present study, the mitochondrial cytochrome c oxidase I (COI) gene was used to confirm the morphological identification of H. aberrans. In addition, landmark-based geometric morphometrics was used to determine sexual dimorphism. The molecular analysis was conducted with 10 COI sequences. The results showed that all sequences were 100% identical. The sequence was not highly similar to reference sequences from GenBank and did not match any identified species from Barcode of Life Data Systems (BOLD). Phylogenetic analysis clearly differentiated this species from other species within the subfamily Stomoxyinae. For geometric morphometric analysis, a total of 16 wing pictures were analysed using the landmark-based approach. The results showed significant differences in wing shape between males and females, with a cross-validated classification score of 100%. The allometric analysis showed that wing shape has no correlation with size. Therefore, the COI gene is effective in species identification of H. aberrans, and geometric morphometrics is also effective in determining sexual dimorphism.
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Affiliation(s)
- Tanasak Changbunjong
- Department of Pre-clinic and Applied Animal Science, Faculty of Veterinary Science, Mahidol University, Nakhon Pathom 73170, Thailand
- The Monitoring and Surveillance Center for Zoonotic Diseases in Wildlife and Exotic Animals (MoZWE), Faculty of Veterinary Science, Mahidol University, Nakhon Pathom 73170, Thailand
| | - Jiraporn Ruangsittichai
- Department of Medical Entomology, Faculty of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand;
| | - Gerard Duvallet
- UMR5175 CEFE, Centre d’Ecologie Fonctionnelle et Evolutive, Université Paul-Valéry, 34090 Montpellier, France;
| | - Adrian C. Pont
- Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK;
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8
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Pérez S, Fogaça JM, Wolff M, De Carvalho CJB. Morphological phylogeny of Reinwardtia Brauer & Bergenstamm (Diptera, Muscidae), with the description of a new species from the Neotropical region. SYST BIODIVERS 2020. [DOI: 10.1080/14772000.2020.1776782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Sandra Pérez
- Grupo de Entomología, Universidad de Antioquia, Apartado aéreo 1226, Medellín, Colombia
| | - João Manuel Fogaça
- Laboratório de Biodiversidade e Biogeografia de Diptera, Departamento de Zoologia, Universidade Federal do Paraná, C.P. 19020, 81531–980, Curitiba, PR, Brazil
| | - Marta Wolff
- Grupo de Entomología, Universidad de Antioquia, Apartado aéreo 1226, Medellín, Colombia
| | - Claudio José Barros De Carvalho
- Laboratório de Biodiversidade e Biogeografia de Diptera, Departamento de Zoologia, Universidade Federal do Paraná, C.P. 19020, 81531–980, Curitiba, PR, Brazil
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9
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Narayanan Kutty S, Meusemann K, Bayless KM, Marinho MAT, Pont AC, Zhou X, Misof B, Wiegmann BM, Yeates D, Cerretti P, Meier R, Pape T. Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera. Cladistics 2019; 35:605-622. [DOI: 10.1111/cla.12375] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/03/2019] [Indexed: 12/21/2022] Open
Affiliation(s)
- Sujatha Narayanan Kutty
- Department of Biological Sciences National University of Singapore 14 Science Dr 4 Singapore 117543 Singapore
| | - Karen Meusemann
- Biology I, Evolutionary Biology & Ecology University of Freiburg Hauptstraße 1 Freiburg (Brsg.) Germany
- Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)/Zentrum für Molekulare Biodiversitätsforschung (ZMB) Bonn Germany
- Australian National Insect Collection CSIRO National Research Collections Australia (NRCA) Acton, ACT Canberra Australia
| | - Keith M. Bayless
- Department of Entomology California Academy of Sciences San Francisco CA USA
- Department of Entomology North Carolina State University Raleigh NC 27695 USA
| | - Marco A. T. Marinho
- Departamento de Ecologia, Zoologia e Genética Instituto de Biologia Universidade Federal de Pelotas Pelotas RS Brazil
| | - Adrian C. Pont
- Oxford University Museum of Natural History Parks Road Oxford OX1 3PW UK
| | - Xin Zhou
- Beijing Advanced Innovation Center for Food Nutrition and Human Health China Agricultural University Beijing 100193 China
- Department of Entomology China Agricultural University Beijing 100193 China
| | - Bernhard Misof
- Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)/Zentrum für Molekulare Biodiversitätsforschung (ZMB) Bonn Germany
| | - Brian M. Wiegmann
- Department of Entomology North Carolina State University Raleigh NC 27695 USA
| | - David Yeates
- Australian National Insect Collection CSIRO National Research Collections Australia (NRCA) Acton, ACT Canberra Australia
| | - Pierfilippo Cerretti
- Dipartimento di Biologia e Biotecnologie ‘Charles Darwin’ Sapienza Università di Roma Rome Italy
| | - Rudolf Meier
- Department of Biological Sciences National University of Singapore 14 Science Dr 4 Singapore 117543 Singapore
| | - Thomas Pape
- Natural History Museum of Denmark University of Copenhagen Universitetsparken 15 Copenhagen DK–2100 Denmark
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10
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Ren L, Shang Y, Yang L, Shen X, Chen W, Wang Y, Cai J, Guo Y. Comparative analysis of mitochondrial genomes among four species of muscid flies (Diptera: Muscidae) and its phylogenetic implications. Int J Biol Macromol 2019; 127:357-364. [PMID: 30658142 DOI: 10.1016/j.ijbiomac.2019.01.063] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 01/14/2019] [Accepted: 01/14/2019] [Indexed: 10/27/2022]
Abstract
Muscidae, commonly known as house flies and their close relatives, is one of the dipteran insects of recognized medical, veterinary, and ecological importance. Mitochondrial genomes (Mitogenomes) have been widely used for exploring phylogenetic analysis and taxonomic diagnosis due to the difficulty in distinguishing them morphologically. In this study, our complete mitogenomes of muscid flies were sequenced and aligned, which ranged from 15,117 bp (Synthesiomyia nudiseta) to 16,089 bp (Musca sorbens) in length, and contained a typical circular molecule comprising 13 protein-coding genes (PCGs), two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and a non-coding control region. The order and orientation of genes were identical with that from the ancestral insects. The phylogenetic analysis based on the mitochondrial genes indicated that the subfamily relationships within Muscidae were reconstructed as (Mydaeinae (Muscinae (Reinwardtiinae + Azeliinae))). Similar tree topologies were recovered from both Maximum Likelihood (ML) and Bayesian Inference (BI) analysis. Furthermore, we compared the phylogenetic analyses that were constructed using internal transcribed spacer 2 (ITS2), elongation factor-1α (EF-1α), 13 PCGs and 13 PCGs + ITS2 + EF-1α, respectively. Combined analysis of nuclear gene partitions improved support and resolution for resulting topologies but the positions of branches were obviously inconsistent due to limited species. More mitogenomes should be sequenced representing various taxonomic levels, especially close related species, which will enhance our understanding of phylogenetic relationships among muscids.
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Affiliation(s)
- Lipin Ren
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yanjie Shang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Li Yang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Xiao Shen
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Wei Chen
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yong Wang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Jifeng Cai
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yadong Guo
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China.
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11
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Giordani G, Grzywacz A, Vanin S. Characterization and Identification of Puparia of Hydrotaea Robineau-Desvoidy, 1830 (Diptera: Muscidae) From Forensic and Archaeological Contexts. JOURNAL OF MEDICAL ENTOMOLOGY 2019; 56:45-54. [PMID: 30137441 DOI: 10.1093/jme/tjy142] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Indexed: 06/08/2023]
Abstract
Flies and beetles are the main components of the entomofauna colonizing a body after death. Following the recognition of constant and predictable colonization patterns and the knowledge about the dependence of the insect development to temperature, a new discipline, forensic entomology, has provided information useful to reconstruct criminal events. Funerary archaeoentomology has also applied the same rationale in archaeological contexts. Puparia represent a large fraction of the insect remains that can be found associated with a cadaver, especially when the body is mummified or in the advanced stages of decomposition. Puparium identification is still a problematic topic due to the lack of identification keys and, in several cases, a lack of diagnostic feature descriptions. Here, we focus the attention on some Hydrotaea Robineau-Desvoidy (Diptera, Muscidae) puparia from forensic and archaeological contexts. Puparia of Hydrotaea capensis (Wiedemann), Hydrotaea ignava (Harris), Hydrotaea aenescens (Wiedemann), Hydrotaea similis Meade, Hydrotaea pilipes Stein, and Hydrotaea dentipes (Fabricius) are here detailed and illustrated. Posterior spiracles, anal plate, and intersegmental spines have been considered as good diagnostic characters for the identification of these puparia.
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Affiliation(s)
- Giorgia Giordani
- Department of Biological and Geographical Sciences, School of Applied Sciences, University of Huddersfield, Huddersfield, UK
| | - Andrzej Grzywacz
- Faculty of Biology and Environmental Protection, Nicolaus Copernicus University, Torún, Poland
| | - Stefano Vanin
- Department of Biological and Geographical Sciences, School of Applied Sciences, University of Huddersfield, Huddersfield, UK
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12
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A new species of the genus Morellia Robineau-Desvoidy (Diptera: Muscidae) from Yunnan, China, with analysis of available DNA barcoding sequences. Biologia (Bratisl) 2018. [DOI: 10.2478/s11756-018-0134-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Fogaça JM, de Carvalho CJB. NeotropicalLispe(Diptera: Muscidae): notes, redescriptions and key to species. J NAT HIST 2018. [DOI: 10.1080/00222933.2018.1515380] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- João M. Fogaça
- Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil
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14
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Tang JM, Li F, Cheng TY, Duan DY, Liu GH. Comparative analyses of the mitochondrial genome of the sheep ked Melophagus ovinus (Diptera: Hippoboscidae) from different geographical origins in China. Parasitol Res 2018; 117:2677-2683. [DOI: 10.1007/s00436-018-5925-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Accepted: 05/11/2018] [Indexed: 01/11/2023]
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15
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Chen W, Shang Y, Ren L, Zhang X, Guo Y. The complete mitochondrial genome of Graphomya rufitibia (Diptera: Muscidae). MITOCHONDRIAL DNA PART B-RESOURCES 2018; 3:403-404. [PMID: 33474184 PMCID: PMC7799511 DOI: 10.1080/23802359.2018.1456375] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Graphomya rufitibia (Diptera: Muscidae) was distributed worldwide. In this study, the complete mitogenome of G. rufitibia was sequenced and annotated, and the full-length was a 15,374 bp fragment, consisting of A (40.64%), G (8.96%), T (36.80%), and C (13.59%). The mitogenome is composed of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a non-coding AT-rich region. Most PCGs used the canonical putative codon to start and stop, 21 tRNAs are folded into the classic clover-leaf structure, with the one exception of tRNA-Ser (AGN). A total length of 11,182 bp encoding 3727 amino acids, and account for 72.7% of the whole mitogenome. Phylogenetic analyses showed that G. rufitibia belongs to family Mydaeinae.
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Affiliation(s)
- Wei Chen
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, China
| | - Yanjie Shang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, China
| | - Lipin Ren
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, China
| | - Xiangyan Zhang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, China
| | - Yadong Guo
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, China
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16
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Grzywacz A, Ogiela J, Tofilski A. Identification of Muscidae (Diptera) of medico-legal importance by means of wing measurements. Parasitol Res 2017; 116:1495-1504. [PMID: 28303414 PMCID: PMC5399051 DOI: 10.1007/s00436-017-5426-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Accepted: 03/08/2017] [Indexed: 12/18/2022]
Abstract
Cadavers attract numerous species and genera of Muscidae, both regular elements of carrion insect assemblages, and accidental visitors. Identification of adult Muscidae may be considered difficult, particularly by non-experts. Since species identification is a vital first step in the analysis of entomological material in any forensic entomology orientated experiment and real cases, various alternative methods of species identification have been proposed. We investigated possibility of semiautomated identification by means of wing measurements as an alternative for classic morphology and DNA-based approaches. We examined genus-level identification success for 790 specimens representing 13 genera of the most common European cadavers visiting Muscidae. We found 99.8% of examined specimens correctly identified to the genus-level. Without error, the following were identified: Azelia, Eudasyphora, Graphomya, Hydrotaea, Musca, Muscina, Mydaea, Neomyia, Polietes, Stomoxys and Thricops. Genus-level misidentifications were found only in Helina and Phaonia. Discrimination of examined material on the species level within Hydrotaea (318 specimens representing eight species) and Muscina (163 specimens representing four species) showed lower, yet still high average identification success, 97.2 and 98.8%, respectively. Our results revealed relatively high success in both genus and species identification of Muscidae of medico-legal importance. Semiautomated identification by means of wing measurements can be used by non-experts and does not require sophisticated equipment. This method will facilitate the identification of forensically relevant muscids in comparison to more difficult and more time-consuming identification approaches based on taxonomic keys or DNA-based methods. However, for unambiguous identification of some taxa, we recommend complementary use of identification keys.
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Affiliation(s)
- Andrzej Grzywacz
- Chair of Ecology and Biogeography, Nicolaus Copernicus University, Lwowska 1, 87-100, Toruń, Poland.
| | - Jakub Ogiela
- Department of Pomology and Apiculture, Agricultural University, 29 Listopada 54, 31-425, Kraków, Poland
| | - Adam Tofilski
- Department of Pomology and Apiculture, Agricultural University, 29 Listopada 54, 31-425, Kraków, Poland
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Patitucci LD, Quiroga M, Couri MS, Saravia-Pietropaolo MJ. Oviposition in the bird parasitic fly Philornis torquans (Nielsen, 1913) (Diptera: Muscidae) and eggs’ adaptations to dry environments. ZOOL ANZ 2017. [DOI: 10.1016/j.jcz.2017.01.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Junqueira ACM, Azeredo-Espin AML, Paulo DF, Marinho MAT, Tomsho LP, Drautz-Moses DI, Purbojati RW, Ratan A, Schuster SC. Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity. Sci Rep 2016; 6:21762. [PMID: 26912394 PMCID: PMC4766414 DOI: 10.1038/srep21762] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Accepted: 01/28/2016] [Indexed: 11/21/2022] Open
Abstract
True flies are insects of the order Diptera and encompass one of the most diverse groups of animals on Earth. Within dipterans, Schizophora represents a recent radiation of insects that was used as a model to develop a pipeline for generating complete mitogenomes using various sequencing platforms and strategies. 91 mitogenomes from 32 different species were sequenced and assembled with high fidelity, using amplicon, whole genome shotgun or single molecule sequencing approaches. Based on the novel mitogenomes, we estimate the origin of Schizophora within the Cretaceous-Paleogene (K-Pg) boundary, about 68.3 Ma. Detailed analyses of the blowfly family (Calliphoridae) place its origin at 22 Ma, concomitant with the radiation of grazing mammals. The emergence of ectoparasitism within calliphorids was dated 6.95 Ma for the screwworm fly and 2.3 Ma for the Australian sheep blowfly. Varying population histories were observed for the blowfly Chrysomya megacephala and the housefly Musca domestica samples in our dataset. Whereas blowflies (n = 50) appear to have undergone selective sweeps and/or severe bottlenecks in the New World, houseflies (n = 14) display variation among populations from different zoogeographical zones and low levels of gene flow. The reported high-throughput mitogenomics approach for insects enables new insights into schizophoran diversity and population history of flies.
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Affiliation(s)
- Ana Carolina M. Junqueira
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551
| | - Ana Maria L. Azeredo-Espin
- Centro de Biologia Molecular e Engenharia Genética and Departamento de Genética, Evolução e Bioagentes, Universidade Estadual de Campinas, Campinas, SP, 13083-875, Brazil
| | - Daniel F. Paulo
- Centro de Biologia Molecular e Engenharia Genética and Departamento de Genética, Evolução e Bioagentes, Universidade Estadual de Campinas, Campinas, SP, 13083-875, Brazil
| | - Marco Antonio T. Marinho
- Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Departamento de Biologia, Universidade de São Paulo, Ribeirão Preto, SP, 14040-901, Brazil
| | - Lynn P. Tomsho
- Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Daniela I. Drautz-Moses
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551
| | - Rikky W. Purbojati
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551
| | - Aakrosh Ratan
- Department of Public Health Sciences and Center for Public Health Genomics, University of Virginia, Charlottesville, VA, 22908, USA
| | - Stephan C. Schuster
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551
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