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For: Herden T, Hanelt P, Friesen N. Phylogeny of Allium L. subgenus Anguinum (G. Don. ex W.D.J. Koch) N. Friesen (Amaryllidaceae). Mol Phylogenet Evol 2015;95:79-93. [PMID: 26639102 DOI: 10.1016/j.ympev.2015.11.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Revised: 11/03/2015] [Accepted: 11/05/2015] [Indexed: 01/26/2023]
Number Cited by Other Article(s)
1
Zhang Z, Liu G, Li M. Incomplete lineage sorting and gene flow within Allium (Amayllidaceae). Mol Phylogenet Evol 2024;195:108054. [PMID: 38471599 DOI: 10.1016/j.ympev.2024.108054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 02/01/2024] [Accepted: 03/07/2024] [Indexed: 03/14/2024]
2
He XJ. Integrating high-volume molecular and morphological data into the evolutionary studies of Allium. PLANT DIVERSITY 2024;46:1-2. [PMID: 38343593 PMCID: PMC10851282 DOI: 10.1016/j.pld.2023.12.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 12/11/2023] [Indexed: 10/28/2024]
3
Lee M, Lee HY, Kang JS, Lee H, Park KJ, Park JY, Yang TJ. Authentication of Allium ulleungense, A. microdictyon and A. ochotense based on super-barcoding of plastid genome and 45S nrDNA. PLoS One 2023;18:e0294457. [PMID: 37983242 PMCID: PMC10659177 DOI: 10.1371/journal.pone.0294457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 10/31/2023] [Indexed: 11/22/2023]  Open
4
Bhowmick BK, Sarkar S, Roychowdhury D, Patil SD, Lekhak MM, Ohri D, Rama Rao S, Yadav SR, Verma RC, Dhar MK, Raina SN, Jha S. Allium cytogenetics: a critical review on the Indian taxa. COMPARATIVE CYTOGENETICS 2023;17:129-156. [PMID: 37304149 PMCID: PMC10252142 DOI: 10.3897/compcytogen.17.98903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 02/28/2023] [Indexed: 06/13/2023]
5
Yang J, Kim SH, Gil HY, Choi HJ, Kim SC. New insights into the phylogenetic relationships among wild onions (Allium, Amaryllidaceae), with special emphasis on the subgenera Anguinum and Rhizirideum, as revealed by plastomes. FRONTIERS IN PLANT SCIENCE 2023;14:1124277. [PMID: 37025138 PMCID: PMC10070991 DOI: 10.3389/fpls.2023.1124277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 03/01/2023] [Indexed: 06/19/2023]
6
Fu X, Xie DF, Zhou YY, Cheng RY, Zhang XY, Zhou SD, He XJ. Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes. BMC PLANT BIOLOGY 2023;23:70. [PMID: 36726056 PMCID: PMC9890777 DOI: 10.1186/s12870-022-03993-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 12/09/2022] [Indexed: 06/01/2023]
7
Çavuşoğlu D. Modulation of NaCl-induced osmotic, cytogenetic, oxidative and anatomic damages by coronatine treatment in onion (Allium cepa L.). Sci Rep 2023;13:1580. [PMID: 36709377 PMCID: PMC9884239 DOI: 10.1038/s41598-023-28849-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 01/25/2023] [Indexed: 01/29/2023]  Open
8
Khassanov FO, Pulatov S, Asatulloev T, Ergashov I, Tojibaev KS, Yusupov Z. Alliumsunhangii - a new species from section Brevidentia F.O.Khass. & Iengal. (Amaryllidaceae) from Southern Pamir-Alay, Uzbekistan. PHYTOKEYS 2023;219:35-48. [PMID: 37252455 PMCID: PMC10209640 DOI: 10.3897/phytokeys.219.96464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 01/03/2023] [Indexed: 05/31/2023]
9
Comparative and phylogenetic analysis of the complete chloroplast genome sequences of Allium mongolicum. Sci Rep 2022;12:21676. [PMID: 36522492 PMCID: PMC9755143 DOI: 10.1038/s41598-022-26354-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022]  Open
10
Wang L, Zhang C, Yin W, Wei W, Wang Y, Sa W, Liang J. Single-molecule real-time sequencing of the full-length transcriptome of purple garlic (Allium sativum L. cv. Leduzipi) and identification of serine O-acetyltransferase family proteins involved in cysteine biosynthesis. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022;102:2864-2873. [PMID: 34741310 DOI: 10.1002/jsfa.11627] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 10/25/2021] [Accepted: 11/05/2021] [Indexed: 06/13/2023]
11
Comparative Plastome Analysis of Three Amaryllidaceae Subfamilies: Insights into Variation of Genome Characteristics, Phylogeny, and Adaptive Evolution. BIOMED RESEARCH INTERNATIONAL 2022;2022:3909596. [PMID: 35372568 PMCID: PMC8970886 DOI: 10.1155/2022/3909596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 01/19/2022] [Accepted: 02/05/2022] [Indexed: 11/17/2022]
12
Xie DF, Cheng RY, Price M, Chen JP, Lei JQ, Zhang YY, He XJ. Alliumheterophyllum (Amaryllidaceae), a new species from Henan, China. PHYTOKEYS 2022;190:53-67. [PMID: 35437376 PMCID: PMC8881438 DOI: 10.3897/phytokeys.190.77449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 01/23/2022] [Indexed: 06/14/2023]
13
Feng B, Wang X, Chen S, Zhang Y, Su X, Song S. Transcriptome analysis and genetic diversity of Allium victorialis germplasms from the Changbai Mountains. MITOCHONDRIAL DNA PART B-RESOURCES 2021;6:2915-2923. [PMID: 34553046 PMCID: PMC8451692 DOI: 10.1080/23802359.2021.1972857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
14
Li MJ, Yu HX, Guo XL, He XJ. Out of the Qinghai-Tibetan Plateau and rapid radiation across Eurasia for Allium section Daghestanica (Amaryllidaceae). AOB PLANTS 2021;13:plab017. [PMID: 34055281 PMCID: PMC8152445 DOI: 10.1093/aobpla/plab017] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 04/12/2021] [Indexed: 06/12/2023]
15
Seed Morphology of Allium L. (Amaryllidaceae) from Central Asian Countries and Its Taxonomic Implications. PLANTS 2020;9:plants9091239. [PMID: 32962259 PMCID: PMC7570352 DOI: 10.3390/plants9091239] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 09/17/2020] [Accepted: 09/18/2020] [Indexed: 11/18/2022]
16
Sun X, Zhu S, Li N, Cheng Y, Zhao J, Qiao X, Lu L, Liu S, Wang Y, Liu C, Li B, Guo W, Gao S, Yang Z, Li F, Zeng Z, Tang Q, Pan Y, Guan M, Zhao J, Lu X, Meng H, Han Z, Gao C, Jiang W, Zhao X, Tian S, Su J, Cheng Z, Liu T. A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis. MOLECULAR PLANT 2020;13:1328-1339. [PMID: 32730994 DOI: 10.1016/j.molp.2020.07.019] [Citation(s) in RCA: 77] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 06/26/2020] [Accepted: 07/27/2020] [Indexed: 05/21/2023]
17
Adaptation Evolution and Phylogenetic Analyses of Species in Chinese Allium Section Pallasia and Related Species Based on Complete Chloroplast Genome Sequences. BIOMED RESEARCH INTERNATIONAL 2020;2020:8542797. [PMID: 32626767 PMCID: PMC7306069 DOI: 10.1155/2020/8542797] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Accepted: 05/22/2020] [Indexed: 11/20/2022]
18
Xie DF, Tan JB, Yu Y, Gui LJ, Su DM, Zhou SD, He XJ. Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences. ANNALS OF BOTANY 2020;125:1039-1055. [PMID: 32239179 PMCID: PMC7262478 DOI: 10.1093/aob/mcaa024] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 04/01/2020] [Indexed: 05/22/2023]
19
Sayadi V, Karimzadeh G, Rashidi Monfared S, Naghavi MR. Identification and expression analysis of S-alk(en)yl-L-cysteine sulfoxide lyase isoform genes and determination of allicin contents in Allium species. PLoS One 2020;15:e0228747. [PMID: 32092058 PMCID: PMC7039512 DOI: 10.1371/journal.pone.0228747] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 01/21/2020] [Indexed: 11/19/2022]  Open
20
Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing. Mol Phylogenet Evol 2020;146:106737. [PMID: 31982455 DOI: 10.1016/j.ympev.2020.106737] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 01/20/2020] [Accepted: 01/21/2020] [Indexed: 01/27/2023]
21
Han TS, Zheng QJ, Onstein RE, Rojas-Andrés BM, Hauenschild F, Muellner-Riehl AN, Xing YW. Polyploidy promotes species diversification of Allium through ecological shifts. THE NEW PHYTOLOGIST 2020;225:571-583. [PMID: 31394010 DOI: 10.1111/nph.16098] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 08/01/2019] [Indexed: 05/14/2023]
22
Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses. Sci Rep 2019;9:12250. [PMID: 31439882 PMCID: PMC6706373 DOI: 10.1038/s41598-019-48708-x] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 08/09/2019] [Indexed: 11/26/2022]  Open
23
Jin FY, Y X, Xie DF, Li H, Yu Y, Zhou SD, He XJ. Comparative Complete Chloroplast Genome Analyses and Contribution to the Understanding of Chloroplast Phylogeny and Adaptive Evolution in Subgenus Anguinum. RUSS J GENET+ 2019. [DOI: 10.1134/s1022795419070081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
24
Xie DF, Yu HX, Price M, Xie C, Deng YQ, Chen JP, Yu Y, Zhou SD, He XJ. Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome. FRONTIERS IN PLANT SCIENCE 2019;10:460. [PMID: 31114591 PMCID: PMC6503222 DOI: 10.3389/fpls.2019.00460] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 03/27/2019] [Indexed: 05/25/2023]
25
Filyushin MA, Mazur AM, Shchennikova AV, Kochieva ЕZ. Comparative analysis of the complete plastomes of garlic Allium sativum and bulb onion Allium cepa. Vavilovskii Zhurnal Genet Selektsii 2018. [DOI: 10.18699/vj18.390] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
26
Tanaka E, Ono Y. Whole-leaf fluorescence imaging to visualize in planta fungal structures of Victory onion leaf rust fungus, Uromyces japonicus, and its taxonomic evaluation. MYCOSCIENCE 2018. [DOI: 10.1016/j.myc.2017.08.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
27
Jin FY, Xie DF, Zhou SD, He XJ. Characterization of the complete chloroplast genome of Allium prattii. MITOCHONDRIAL DNA PART B-RESOURCES 2018;3:153-154. [PMID: 33490492 PMCID: PMC7800986 DOI: 10.1080/23802359.2018.1436994] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
28
Danderson CA, Downie SR, Hermann M. Rampant polyphyly in the Arracacia clade (Apiaceae) and an assessment of the phylogenetic utility of 20 noncoding plastid loci. Mol Phylogenet Evol 2017;118:286-305. [PMID: 29017853 DOI: 10.1016/j.ympev.2017.10.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Revised: 10/04/2017] [Accepted: 10/06/2017] [Indexed: 10/18/2022]
29
Hauenschild F, Favre A, Schnitzler J, Michalak I, Freiberg M, Muellner-Riehl AN. Spatio-temporal evolution of Allium L. in the Qinghai-Tibet-Plateau region: Immigration and in situ radiation. PLANT DIVERSITY 2017;39:167-179. [PMID: 30159508 PMCID: PMC6112296 DOI: 10.1016/j.pld.2017.05.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Revised: 05/11/2017] [Accepted: 05/31/2017] [Indexed: 05/23/2023]
30
Zhu S, Tang S, Tan Z, Yu Y, Dai Q, Liu T. Comparative transcriptomics provide insight into the morphogenesis and evolution of fistular leaves in Allium. BMC Genomics 2017;18:60. [PMID: 28068920 PMCID: PMC5223570 DOI: 10.1186/s12864-016-3474-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Accepted: 12/26/2016] [Indexed: 11/10/2022]  Open
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