1
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Li F, Li W, Zhang Y, Wang A, Liu C, Gu Z, Yang Y. The molecular phylogeny of Caenogastropoda (Mollusca, Gastropoda) based on mitochondrial genomes and nuclear genes. Gene 2024; 928:148790. [PMID: 39053659 DOI: 10.1016/j.gene.2024.148790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 07/02/2024] [Accepted: 07/19/2024] [Indexed: 07/27/2024]
Abstract
Comprising about 60 % of gastropod diversity, caenogastropods display almost all kinds of shell forms and include many commercially important marine groups. Although the monophyly of Caenogastropoda has been widely accepted, thier internal phylogenetic relationships remain unclear. In the present study, a total of 27 caenogastropods belonging to eight superfamilies were sequenced and used for phylogenetic reconstruction. All newly sequenced mitogenomes adhered to the consensus gene order of caenogastropods, except for those of Vanikoroidea, Vermetoidea and Cerithioidea, which involved protein-coding genes. The reconstructed mitogenomic phylogeny suggested the monophylies of Architaenioglossa, Sorbeoconcha, Hypsogastropoda and the siphonate clade. The present study also identified a close affinity among Cypraeoidea, Ficoidea, Tonnoidea, and Neogastropoda, supported by the presence of a pleurembolic proboscis. The monophyly of Neogastropoda was not supported, as Cancellariidae was found to be sister to the limpet-shaped group Calyptraeoidea, and (Tonooidea + Ficoidea) were sister to the remaining neogastropods. This study provides important information for better understanding the evolution of caenogastropods, as well as for the protection and utilization of these diverse and economically significant marine resources.
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Affiliation(s)
- Fengping Li
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China
| | - Wanying Li
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China
| | - Yu Zhang
- Sanya Oceanographic Institution, Ocean University of China, Sanya, China
| | - Aimin Wang
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China
| | - Chunsheng Liu
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China
| | - Zhifeng Gu
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China
| | - Yi Yang
- School of Marine Biology and Fisheries, Hainan University, Haikou 570228, China; Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China.
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2
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Dowle EJ, Trewick SA, Morgan-Richards M. Fossil-calibrated phylogenies of Southern cave wētā show dispersal and extinction confound biogeographic signal. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231118. [PMID: 38356874 PMCID: PMC10864783 DOI: 10.1098/rsos.231118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 01/19/2024] [Indexed: 02/16/2024]
Abstract
The biota of continents and islands are commonly considered to have a source-sink relationship, but small islands can harbour distinctive taxa. The distribution of four monotypic genera of Orthoptera on young subantarctic islands indicates a role for long-distance dispersal and extinction. Phylogenetic relationships were inferred from whole mtDNA genomes and nuclear sequences (45S cassette; four histones). We used a fossil and one palaeogeographic event to calibrate molecular clock analysis. We confirm that neither the Australian nor Aotearoa-New Zealand Rhaphidophoridae faunas are monophyletic. The radiation of Macropathinae may have begun in the late Jurassic, but trans-oceanic dispersal is required to explain the current distribution of some lineages within this subfamily. Dating the most recent common ancestor of seven island endemic species with their nearest mainland relative suggests that each existed long before their island home was available. Time estimates from our fossil-calibrated molecular clock analysis suggest several lineages have not been detected on mainland New Zealand, Australia, or elsewhere most probably due to their extinction, providing evidence that patterns of extinction, which are not consistently linked to range size or lineage age, confound biogeographic signal.
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Affiliation(s)
- Eddy J. Dowle
- Department of Anatomy, University of Otago, 9016 Dunedin, New Zealand
| | - Steven A. Trewick
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
| | - Mary Morgan-Richards
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
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3
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Trewick SA, Koot EM, Morgan-Richards M. Mwhitiwhiti Aotearoa: Phylogeny and synonymy of the silent alpine grasshopper radiation of New Zealand (Orthoptera: Acrididae). Zootaxa 2023; 5383:225-241. [PMID: 38221250 DOI: 10.11646/zootaxa.5383.2.7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Indexed: 01/16/2024]
Abstract
Aotearoa New Zealand has a fauna of endemic alpine grasshoppers, consisting of thirteen species distributed among four genera. The many re-classifications of species within this group and the presence of species complexes highlight the uncertainty that surrounds relationships within and between these genera. High-throughput Next Generation Sequencing was used to assemble the complete mitochondrial genomes, 45S ribosomal cassettes and histone sequences of New Zealands four endemic alpine genera: Alpinacris, Brachaspis, Paprides and Sigaus. Phylogenetic analysis of these molecular datasets, as individual genes, partitions and combinations returned a consistent topology that is incompatible with the current classification. The genera Sigaus, Alpinacris, and Paprides all exhibit paraphyly. A consideration of the pronotum, epiphallus and terminalia of adult specimens reveals species-specific differences, but fails to provide compelling evidence for species groups justifying distinct genera. In combination with phylogenetic, morphological and spatial evidence we propose a simplified taxonomy consisting of a single genus for the mwhitiwhiti Aotearoa species radiation.
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Affiliation(s)
- Steven A Trewick
- Wildlife & Ecology Group; SNS; Massey University; Palmerston North; New Zealand.
| | - Emily M Koot
- Wildlife & Ecology Group; SNS; Massey University; Palmerston North; New Zealand; The New Zealand Institute for Plant and Food Research Ltd; Palmerston North; New Zealand.
| | - Mary Morgan-Richards
- Wildlife & Ecology Group; SNS; Massey University; Palmerston North; New Zealand.
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4
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Segovia NI, González-Wevar CA, Naretto J, Rosenfeld S, Brickle P, Hüne M, Bernal V, Haye PA, Poulin E. The right tool for the right question: contrasting biogeographic patterns in the notothenioid fish Harpagifer spp. along the Magellan Province. Proc Biol Sci 2022; 289:20212738. [PMID: 35382596 PMCID: PMC8984805 DOI: 10.1098/rspb.2021.2738] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Molecular-based analysis has become a fundamental tool to understand the role of Quaternary glacial episodes. In the Magellan Province in southern South America, ice covering during the last glacial maximum (20 ka) radically altered the landscape/seascape, speciation rates and distribution of species. For the notothenioid fishes of the genus Harpagifer, in the area are described two nominal species. Nevertheless, this genus recently colonized South America from Antarctica, providing a short time for speciation processes. Combining DNA sequences and genotyping-by-sequencing SNPs, we evaluated the role of Quaternary glaciations over the patterns of genetic structure in Harpagifer across its distribution in the Magellan Province. DNA sequences showed low phylogeographic structure, with shared and dominant haplotypes between nominal species, suggesting a single evolutionary unit. SNPs identified contrastingly two groups in Patagonia and a third well-differentiated group in the Falkland/Malvinas Islands with limited and asymmetric gene flow. Linking the information of different markers allowed us to infer the relevance of postglacial colonization mediated by the general oceanographic circulation patterns. Contrasting rough- and fine-scale genetic patterns highlights the relevance of combined methodologies for species delimitation, which, depending on the question to be addressed, allows discrimination among phylogeographic structure, discarding incipient speciation, and contemporary spatial differentiation processes.
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Affiliation(s)
- N I Segovia
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Larrondo 1281, Coquimbo, Chile.,Instituto Milenio en Socio-ecología Costera (SECOS), Coquimbo, Chile.,Instituto Milenio Biodiversidad de Ecosistemas Antárticos y subAntárticos (MI-BASE), Valdivia, Chile
| | - C A González-Wevar
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Instituto Milenio Biodiversidad de Ecosistemas Antárticos y subAntárticos (MI-BASE), Valdivia, Chile.,Instituto de Ciencias Marinas y Limnológicas (ICML), Facultad de Ciencias, Universidad Austral de Chile, Casilla 567, Valdivia, Chile.,Centro de Investigación en Dinámicas de Ecosistemas de Altas Latitudes (Fondap IDEAL), Universidad Austral de Chile
| | - J Naretto
- Costa Humboldt, Puerto Varas, Los Lagos, Chile
| | - S Rosenfeld
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Laboratorio de Ecosistemas Antárticos y sub-Antárticos, Universidad de Magallanes, Chile
| | - P Brickle
- South Atlantic Environmental Research Institute (SAERI), PO Box 609, Stanley Cottage, Port Stanley, Falkland Islands, UK
| | - M Hüne
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Centro de Investigación para la Conservación de los Ecosistemas Australes (ICEA), Punta Arenas, Chile
| | - V Bernal
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Instituto Milenio Biodiversidad de Ecosistemas Antárticos y subAntárticos (MI-BASE), Valdivia, Chile
| | - P A Haye
- Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Larrondo 1281, Coquimbo, Chile.,Instituto Milenio en Socio-ecología Costera (SECOS), Coquimbo, Chile
| | - E Poulin
- Departamento de Ciencias Ecológicas, Instituto Milenio de Ecología y Biodiversidad (IEB), Universidad de Chile. Las Palmeras 3425, Ñuñoa, Santiago, Chile.,Instituto Milenio Biodiversidad de Ecosistemas Antárticos y subAntárticos (MI-BASE), Valdivia, Chile
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5
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Kantor YI, Fedosov AE, Kosyan AR, Puillandre N, Sorokin PA, Kano Y, Clark R, Bouchet P. Molecular phylogeny and revised classification of the Buccinoidea (Neogastropoda). Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlab031] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The superfamily Buccinoidea is distributed across the oceans of the world from the Arctic Ocean to the Antarctic and from intertidal to abyssal depths. It encompasses 3351 recent species in 337 genera. The latest taxonomic account recognized eight full families. For the first time, the monophyly of the superfamily and the relationships among the families are tested with molecular data supplemented by anatomical and radula data. Five genetic markers were used: fragments of mitochondrial COI, 16S rRNA, 12S rRNA and nuclear Histone 3 (H3) and 28S rRNA genes (for 225 species of 117 genera). Our analysis recovered Buccinoidea monophyletic in Bayesian analyses. The relationships between the formerly recognized families and subfamilies are drastically revised and a new classification of the superfamily is here proposed, now including 20 taxa of family rank and 23 subfamilies. Five new families (Chauvetiidae, Dolicholatiridae, Eosiphonidae, Prodotiidae and Retimohniidae) and one subfamily of Nassariidae (Tomliniinae) are described. Austrosiphonidae and Tudiclidae are resurrected from synonymy and employed in a new taxonomical extension. All but 40 recent genera are reclassified. Our results demonstrate that anatomy is rather uniform within the superfamily. With exceptions, the rather uniform radular morphology alone does not allow the allocation of genera to a particular family without additional molecular data.
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Affiliation(s)
- Yuri I Kantor
- A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, 33 Leninski prospect, Moscow, Russian Federation
- Correspondants du Muséum, Institut Systématique Evolution Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles. 57 rue Cuvier, CP 51, 75005 Paris, France
| | - Alexander E Fedosov
- A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, 33 Leninski prospect, Moscow, Russian Federation
- Correspondants du Muséum, Institut Systématique Evolution Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles. 57 rue Cuvier, CP 51, 75005 Paris, France
| | - Alisa R Kosyan
- A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, 33 Leninski prospect, Moscow, Russian Federation
| | - Nicolas Puillandre
- Institut Systématique Evolution Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles. 57 rue Cuvier, CP 51, 75005 Paris, France
| | - Pavel A Sorokin
- A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, 33 Leninski prospect, Moscow, Russian Federation
| | - Yasunori Kano
- Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, Japan
| | - Roger Clark
- Santa Barbara Museum of Natural History, 2559 Puesta Del Sol, Santa Barbara, California, USA
| | - Philippe Bouchet
- Institut Systématique Evolution Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles. 57 rue Cuvier, CP 51, 75005 Paris, France
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6
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Pastorino G. No longer monotypic: new species of the buccinoidean genera Germonea and Drepanodontus in the southwestern Atlantic (Gastropoda: Buccinidae). P BIOL SOC WASH 2021. [DOI: 10.2988/21-00003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Guido Pastorino
- Museo Argentino de Ciencias Naturales “Bernardino Rivadavia” Av. Angel Gallardo 470 3° piso lab. 80 C1405DJR Ciudad Autónoma de Buenos Aires, Argentina
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7
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Vaux F, Gemmell MR, Hills SFK, Marshall BA, Beu AG, Crampton JS, Trewick SA, Morgan-Richards M. Lineage Identification Affects Estimates of Evolutionary Mode in Marine Snails. Syst Biol 2020; 69:1106-1121. [PMID: 32163159 DOI: 10.1093/sysbio/syaa018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 02/13/2020] [Accepted: 03/09/2020] [Indexed: 11/14/2022] Open
Abstract
In order to study evolutionary pattern and process, we need to be able to accurately identify species and the evolutionary lineages from which they are derived. Determining the concordance between genetic and morphological variation of living populations, and then directly comparing extant and fossil morphological data, provides a robust approach for improving our identification of lineages through time. We investigate genetic and shell morphological variation in extant species of Penion marine snails from New Zealand, and extend this analysis into deep time using fossils. We find that genetic and morphological variation identify similar patterns and support most currently recognized extant species. However, some taxonomic over-splitting is detected due to shell size being a poor trait for species delimitation, and we identify incorrect assignment of some fossil specimens. We infer that a single evolutionary lineage (Penion sulcatus) has existed for 22 myr, with most aspects of shell shape and shell size evolving under a random walk. However, by removing samples previously classified as the extinct species P. marwicki, we instead detect morphological stasis for one axis of shell shape variation. This result demonstrates how lineage identification can change our perception of evolutionary pattern and process. [Genotyping by sequencing; geometric morphometrics; morphological evolution; Neogastropoda; phenotype; speciation; stasis.].
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Affiliation(s)
- Felix Vaux
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand.,Department of Fisheries and Wildlife, Coastal Oregon Marine Experiment Station, Hatfield Marine Science Center, Oregon State University, 2030 SE Marine Science Dr, Newport, OR 97365, USA.,Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9016, Otago, New Zealand
| | - Michael R Gemmell
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Simon F K Hills
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Bruce A Marshall
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
| | - Alan G Beu
- GNS Science, PO Box 30-368, Lower Hutt 5011, New Zealand
| | - James S Crampton
- School of Geography, Environment & Earth Sciences, Victoria University of Wellington, PO Box 600, Wellington 6012, New Zealand
| | - Steven A Trewick
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
| | - Mary Morgan-Richards
- Wildlife and Ecology Group, School of Agriculture and Environment, Massey University, Private Bag 11-222, Palmerston North 4410, New Zealand
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8
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Koot EM, Morgan-Richards M, Trewick SA. An alpine grasshopper radiation older than the mountains, on Kā Tiritiri o te Moana (Southern Alps) of Aotearoa (New Zealand). Mol Phylogenet Evol 2020; 147:106783. [DOI: 10.1016/j.ympev.2020.106783] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 02/18/2020] [Accepted: 02/25/2020] [Indexed: 12/31/2022]
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9
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Yang Y, Liu H, Qi L, Kong L, Li Q. Complete Mitochondrial Genomes of Two Toxin-Accumulated Nassariids (Neogastropoda: Nassariidae: Nassarius) and Their Implication for Phylogeny. Int J Mol Sci 2020; 21:ijms21103545. [PMID: 32429583 PMCID: PMC7278921 DOI: 10.3390/ijms21103545] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/08/2020] [Accepted: 05/12/2020] [Indexed: 11/17/2022] Open
Abstract
The Indo-Pacific nassariids (genus Nassarius) possesses the highest diversity within the family Nassariidae. However, the previous shell or radula-based classification of Nassarius is quite confusing due to the homoplasy of certain morphological characteristics. The toxin accumulators Nassarius glans and Nassarius siquijorensis are widely distributed in the subtidal regions of the Indo-Pacific Ocean. In spite of their biological significance, the phylogenetic positions of N. glans and N. siquijorensis are still undetermined. In the present study, the complete mitochondrial genomes of N. glans and N. siquijorensis were sequenced. The present mitochondrial genomes were 15,296 and 15,337 bp in length, respectively, showing negative AT skews and positive GC skews as well as a bias of AT rich on the heavy strand. They contained 13 protein coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and several noncoding regions, and their gene order was identical to most caenogastropods. Based on the nucleotide sequences combining 13 protein coding genes and two rRNA genes, a well-supported phylogeny of Nassarius was reconstructed, and several morphological synapomorphies were observed corresponding to the phylogenetic framework. In addition, the sister group relationship between N. variciferus and the remaining toxin-accumulated nassariids was determined, suggesting that the phylogeny might be related to their diet. The divergence time estimation analysis revealed a correlation between speciation events of nassariids and glacial cycles during the Pliocene-Pleistocene epoch.
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Affiliation(s)
- Yi Yang
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; (Y.Y.); (H.L.); (L.Q.); (L.K.)
| | - Hongyue Liu
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; (Y.Y.); (H.L.); (L.Q.); (L.K.)
| | - Lu Qi
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; (Y.Y.); (H.L.); (L.Q.); (L.K.)
| | - Lingfeng Kong
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; (Y.Y.); (H.L.); (L.Q.); (L.K.)
| | - Qi Li
- Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; (Y.Y.); (H.L.); (L.Q.); (L.K.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Aoshanwei Town, Qingdao 266237, China
- Correspondence: ; Tel.: +86-532-8203-2773
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10
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Kantor Y, Kosyan A, Sorokin P, Fedosov A. On the taxonomic position of Phaenomenella Fraussen & Hadorn, 2006 (Neogastropoda, Buccinoidea) with description of two new species. ZOOSYSTEMA 2020. [DOI: 10.5252/zoosystema2020v42a3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Yuri Kantor
- A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski prospect 33, 119071 Moscow, Russian Federation (Russia) @@gmail.com
| | - Alisa Kosyan
- A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski prospect 33, 119071 Moscow, Russian Federation (Russia) @@gmail.com
| | - Pavel Sorokin
- A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski prospect 33, 119071 Moscow, Russian Federation (Russia) @@gmail.com
| | - Alexander Fedosov
- A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski prospect 33, 119071 Moscow, Russian Federation (Russia) @@gmail.com
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11
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Gemmell MR, Trewick SA, Hills SFK, Morgan‐Richards M. Phylogenetic topology and timing of New Zealand olive shells are consistent with punctuated equilibrium. J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12342] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Michael R. Gemmell
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Steven A. Trewick
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Simon F. K. Hills
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
| | - Mary Morgan‐Richards
- Ecology Group School of Agriculture and Environment Massey University Palmerston North New Zealand
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12
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Cunha TJ, Lemer S, Bouchet P, Kano Y, Giribet G. Putting keyhole limpets on the map: phylogeny and biogeography of the globally distributed marine family Fissurellidae (Vetigastropoda, Mollusca). Mol Phylogenet Evol 2019; 135:249-269. [PMID: 30780003 DOI: 10.1016/j.ympev.2019.02.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 02/06/2019] [Accepted: 02/08/2019] [Indexed: 11/24/2022]
Abstract
Fissurellidae are marine gastropods with a worldwide distribution and a rich fossil record. We integrate molecular, geographical and fossil data to reconstruct the fissurellid phylogeny, estimate divergence times and investigate historical routes of oceanic dispersal. With five molecular markers for 143 terminals representing 27 genera, we resolve deep nodes and find that many genera (e.g., Emarginula, Diodora, Fissurella) are not monophyletic and need systematic revision. Several genera classified as Emarginulinae are recovered in Zeidorinae. Future work should prioritize emarginuline genera to improve understanding of ancestral traits and the early evolution of fissurellids. Tree calibration with the fossilized birth-death model indicates that crown fissurellids originated around 175 Ma, and generally resulted in younger ages for the earliest nodes than the node dating approach. Model-based biogeographic reconstruction, supported by fossils, infers an Indo-West Pacific origin, with a westward colonization of new oceans via the Tethys Seaway upon the breakup of Pangea. Western Atlantic clades then served as source for dispersal towards other parts of the globe. As the sister group to all other fissurellids, Rimula is ranked in its own subfamily, Rimulinae stat. nov. New synonyms: Hemitominae syn. nov. of Zeidorinae stat. nov.; Cranopsissyn. nov. of Puncturella; Variegemarginulasyn. nov. of Montfortula.
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Affiliation(s)
- Tauana Junqueira Cunha
- Museum of Comparative Zoology and Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA. https://orcid.org/0000-0002-8493-2117
| | - Sarah Lemer
- Museum of Comparative Zoology and Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.
| | - Philippe Bouchet
- Institut de Systématique, Évolution, Biodiversité, ISYEB, UMR 7205, CNRS, MNHN, UPMC, EPHE, Muséum National d'Histoire Naturelle, Sorbonne Universités, 55 rue Buffon, CP31, F-75005 Paris, France.
| | - Yasunori Kano
- Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan.
| | - Gonzalo Giribet
- Museum of Comparative Zoology and Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.
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13
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Gemmell MR, Trewick SA, Crampton JS, Vaux F, Hills SFK, Daly EE, Marshall BA, Beu AG, Morgan-Richards M. Genetic structure and shell shape variation within a rocky shore whelk suggest both diverging and constraining selection with gene flow. Biol J Linn Soc Lond 2018. [DOI: 10.1093/biolinnean/bly142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Michael R Gemmell
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
| | - Steven A Trewick
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
| | - James S Crampton
- GNS Science, Lower Hutt, New Zealand
- School of Geography, Environment & Earth Sciences, Victoria University, Victoria University of Wellington, Wellington, New Zealand
| | - Felix Vaux
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
| | - Simon F K Hills
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
| | - Elizabeth E Daly
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
| | - Bruce A Marshall
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
| | | | - Mary Morgan-Richards
- Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand
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14
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Evolutionary lineages of marine snails identified using molecular phylogenetics and geometric morphometric analysis of shells. Mol Phylogenet Evol 2018; 127:626-637. [PMID: 29913310 DOI: 10.1016/j.ympev.2018.06.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Revised: 06/05/2018] [Accepted: 06/05/2018] [Indexed: 01/12/2023]
Abstract
The relationship between morphology and inheritance is of perennial interest in evolutionary biology and palaeontology. Using three marine snail genera Penion, Antarctoneptunea and Kelletia, we investigate whether systematics based on shell morphology accurately reflect evolutionary lineages indicated by molecular phylogenetics. Members of these gastropod genera have been a taxonomic challenge due to substantial variation in shell morphology, conservative radular and soft tissue morphology, few known ecological differences, and geographical overlap between numerous species. Sampling all sixteen putative taxa identified across the three genera, we infer mitochondrial and nuclear ribosomal DNA phylogenetic relationships within the group, and compare this to variation in adult shell shape and size. Results of phylogenetic analysis indicate that each genus is monophyletic, although the status of some phylogenetically derived and likely more recently evolved taxa within Penion is uncertain. The recently described species P. lineatus is supported by genetic evidence. Morphology, captured using geometric morphometric analysis, distinguishes the genera and matches the molecular phylogeny, although using the same dataset, species and phylogenetic subclades are not identified with high accuracy. Overall, despite abundant variation, we find that shell morphology accurately reflects genus-level classification and the corresponding deep phylogenetic splits identified in this group of marine snails.
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15
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Marshall BA, Walton K. A review of Buccipagoda Ponder, 2010 and descriptions of new species and a new genus (Gastropoda: Neogastropoda: Buccinoidea: Buccinidae). MOLLUSCAN RESEARCH 2018. [DOI: 10.1080/13235818.2018.1468525] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
| | - Kerry Walton
- Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand
- School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand
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16
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Abstract
Wolbachia is one of the most widespread intracellular bacteria on earth, estimated to infect between 40 and 66% of arthropod species in most ecosystems that have been surveyed. Their significance rests not only in their vast distribution, but also in their ability to modify the reproductive biology of their hosts, which can ultimately affect genetic diversity and speciation of infected populations. Wolbachia has yet to be formally identified in the fauna of New Zealand which has high levels of endemic biodiversity and this represents a gap in our understanding of the global biology of Wolbachia. Using High Throughput Sequencing (HTS) of host DNA in conjunction with traditional molecular techniques we identified six endemic Orthoptera species that were positive for Wolbachia infection. In addition, short-sequence amplification with Wolbachia specific primers applied to New Zealand and introduced invertebrates detected a further 153 individuals positive for Wolbachia. From these short-range DNA amplification products sequence data was obtained for the ftsZ gene region from 86 individuals representing 10 host species. Phylogenetic analysis using the sequences obtained in this study reveals that there are two distinct Wolbachia bacteria lineages in New Zealand hosts belonging to recognised Wolbachia supergroups (A and B). These represent the first described instances of Wolbachia in the New Zealand native fauna, including detection in putative parasitoids of infected Orthoptera suggesting a possible transmission path. Our detection of Wolbachia infections of New Zealand species provides the opportunity to study local transmission of Wolbachia and explore their role in the evolution of New Zealand invertebrates.
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17
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Marshall BA, Hills SFK, Vaux F. A new species of Penion P. Fischer, 1884 from northern New Zealand (Mollusca: Neogastropoda: Buccinoidea). MOLLUSCAN RESEARCH 2018. [DOI: 10.1080/13235818.2017.1420398] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
| | - Simon F. K. Hills
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
| | - Felix Vaux
- Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
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18
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Genome statistics and phylogenetic reconstructions for Southern Hemisphere whelks (Gastropoda: Buccinulidae). Data Brief 2017; 16:172-181. [PMID: 29201984 PMCID: PMC5702863 DOI: 10.1016/j.dib.2017.11.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 11/01/2017] [Accepted: 11/03/2017] [Indexed: 11/22/2022] Open
Abstract
This data article provides genome statistics, phylogenetic networks and trees for a phylogenetic study of Southern Hemisphere Buccinulidae marine snails [1]. We present alternative phylogenetic reconstructions using mitochondrial genomic and 45S nuclear ribosomal cassette DNA sequence data, as well as trees based on short-length DNA sequence data. We also investigate the proportion of variable sites per sequence length for a set of mitochondrial and nuclear ribosomal genes, in order to examine the phylogenetic information provided by different DNA markers. Sequence alignment files used for phylogenetic reconstructions in the main text and this article are provided here.
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19
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Bouchet P, Rocroi JP, Hausdorf B, Kaim A, Kano Y, Nützel A, Parkhaev P, Schrödl M, Strong EE. Revised Classification, Nomenclator and Typification of Gastropod and Monoplacophoran Families. MALACOLOGIA 2017. [DOI: 10.4002/040.061.0201] [Citation(s) in RCA: 303] [Impact Index Per Article: 43.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- Philippe Bouchet
- Institut de Systématique, Evolution, Biodiversité ISYEB — UMR7205 — CNRS, MNHN, UPMC, EPHE Muséum National d'Histoire Naturelle Sorbonne Universités, 55 Rue Buffon, F-75231 Paris, France;
| | - Jean-Pierre Rocroi
- Institut de Systématique, Evolution, Biodiversité ISYEB — UMR7205 — CNRS, MNHN, UPMC, EPHE Muséum National d'Histoire Naturelle Sorbonne Universités, 55 Rue Buffon, F-75231 Paris, France;
| | - Bernhard Hausdorf
- Zoological Museum, Center of Natural History, Universität Hamburg, Germany
| | - Andrzej Kaim
- Institute of Paleobiology, Polish Academy of Sciences, Warszawa, Poland
| | - Yasunori Kano
- Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan
| | - Alexander Nützel
- Bavarian State Collection of Palaeontology and Geology, Faculty of Earth Sciences and GeoBio-Center LMU, München, Germany
| | - Pavel Parkhaev
- Borissiak Paleontological Institute, Russian Academy of Sciences, Moscow, Russia
| | - Michael Schrödl
- Bavarian State Collection of Zoology, Faculty of Biology and GeoBio-Center LMU, München, Germany
| | - Ellen E. Strong
- National Museum of Natural History, Smithsonian Institution, Washington D.C., U.S.A
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