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Gozcu B, Mahabadi RK, Li YH, Ilicak E, Cukur T, Scarlett J, Cevher V. Learning-Based Compressive MRI. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:1394-1406. [PMID: 29870368 DOI: 10.1109/tmi.2018.2832540] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
In the area of magnetic resonance imaging (MRI), an extensive range of non-linear reconstruction algorithms has been proposed which can be used with general Fourier subsampling patterns. However, the design of these subsampling patterns has typically been considered in isolation from the reconstruction rule and the anatomy under consideration. In this paper, we propose a learning-based framework for optimizing MRI subsampling patterns for a specific reconstruction rule and anatomy, considering both the noiseless and noisy settings. Our learning algorithm has access to a representative set of training signals, and searches for a sampling pattern that performs well on average for the signals in this set. We present a novel parameter-free greedy mask selection method and show it to be effective for a variety of reconstruction rules and performance metrics. Moreover, we also support our numerical findings by providing a rigorous justification of our framework via statistical learning theory.
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Li Y, Yang R, Zhang C, Zhang J, Jia S, Zhou Z. Analysis of generalized rosette trajectory for compressed sensing MRI. Med Phys 2016; 42:5530-44. [PMID: 26329000 DOI: 10.1118/1.4928152] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE The application of compressed sensing (CS) technology in magnetic resonance imaging (MRI) is to accelerate the MRI scan speed by incoherent undersampling of k-space data and nonlinear iterative reconstruction of MRI images. This paper generalizes the existing rosette trajectories to configure the sampling patterns for undersampled k-space data acquisition in MRI scans. The arch and curvature characteristics of the generalized rosette trajectories are analyzed to explore their feasibility and advantages for CS reconstruction of MRI images. METHODS Two key properties crucial to the CS MRI application, the scan speed and sampling incoherence of the generalized rosette trajectories, are analyzed. The analysis on the scan speed of generalized rosette trajectories is based on the transversal time derived from the curvature of the trajectories, and the sampling incoherence is based on the evaluation of the point spread function for the measurement matrix. The results of analysis are supported by extensive simulations where the performances of rosette, spiral, and radial sampling patterns at different acceleration factors are compared. RESULTS It is shown that compared with spiral trajectories, the arch and curvature characteristics of the generalized rosette trajectories are more feasible to meet the physical requirements of undersampled k-space data acquisition in terms of time shortness and scan area. It is further shown that the sampling pattern of the rosette trajectory has higher incoherence than that of the other trajectories and can thus achieve higher reconstruction performance. Reconstruction performances illustrate that the rosette trajectory can achieve about 10% higher peak signal-to-noise ratio than radial and spiral trajectories under the high acceleration factor R = 10. CONCLUSIONS The generalized rosette trajectories can be a desirable candidate for CS reconstruction of MRI.
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Affiliation(s)
- Ya Li
- School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510009, China
| | - Ran Yang
- School of Mobile Information Engineering, Sun Yat-sen University, Zhuhai 519082, China
| | - Cishen Zhang
- Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn VIC 3122, Australia
| | - Jingxin Zhang
- Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn VIC 3122, Australia and Department of Electrical and Computer Systems Engineering, Monash University, Clayton VIC 3800, Australia
| | - Sen Jia
- School of Information Science and Technology, Sun Yat-sen University, Guangzhou 510009, China
| | - Zhiyang Zhou
- Department of Radiology, The Sixth Affiliated Hospital (Gastrointestinal Hospital), Sun Yat-sen University, Guangzhou 510655, China
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Zhao C, Yang J, Gan Y, Liu J, Tan Z, Liang G, Meng X, Sun L, Cao W. Application of MR virtual endoscopy in children with hydrocephalus. Magn Reson Imaging 2015; 33:1205-1211. [PMID: 26248269 DOI: 10.1016/j.mri.2015.07.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2015] [Accepted: 07/29/2015] [Indexed: 01/13/2023]
Abstract
PURPOSE To evaluate the performance of MR virtual endoscopy (MRVE) in children with hydrocephalus. MATERIALS AND METHODS Clinical and imaging data were collected from 15 pediatric patients with hydrocephalus and 15 normal control children. All hydrocephalus patients were confirmed by ventriculoscopy or CT imaging. The cranial 3D-T1 weighted imaging data from fast spoiled gradient echo scan (FSPGR) were transported to working station. VE images of cerebral ventricular cavity were constructed with Navigator software. RESULTS Cerebral ventricular MRVE can achieve similar results as ventriculoscopy in demonstrating the morphology of ventricular wall or intracavity lesion. In addition, MRVE can observe the lesion from distal end of obstruction, as well as other areas that are inaccessible to ventriculoscopy. MRVE can also reveal the pathological change of ventricular inner wall surface, and help determine patency of the cerebral aqueduct and fourth ventricle outlet. CONCLUSION MR virtual endoscopy provides a non-invasive diagnostic modality that can be used as a supplemental approach to ventriculoscopy. However, its sensitivity and specificity need to be determined in the large study.
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Affiliation(s)
- Cailei Zhao
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China; The Key Laboratory of Biomedical Information Engineering, Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, P.R. China
| | - Jian Yang
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China.
| | - Yungen Gan
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Jiangang Liu
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Neurosurgery, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Zhen Tan
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Neurosurgery, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Guohua Liang
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Xianlei Meng
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Longwei Sun
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
| | - Weiguo Cao
- Department of Radiology, The first affiliated hospital of Xi'an jiaotong university, No. 277, Yantaxi Road, Xi'an, 710061, China; Department of Radiology, Shenzhen children's Hospital, No. 7019, Yitian Road, Shenzhen, 518038, China
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