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Ozerov MY, Noreikiene K, Kahar S, Flajšhans M, Gross R, Vasemägi A. Differential expression and alternative splicing analyses of multiple tissues reveal albinism-associated genes in the Wels catfish (Silurus glanis). Comp Biochem Physiol B Biochem Mol Biol 2024; 271:110941. [PMID: 38218377 DOI: 10.1016/j.cbpb.2024.110941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 01/10/2024] [Accepted: 01/10/2024] [Indexed: 01/15/2024]
Abstract
Albinism is a widespread departure from a typical body colouration due to altered melanin production. The Wels catfish (Silurus glanis) is among the largest freshwater fish species in the world, and albino individuals occur both in the wild and in aquaculture. Here, we performed transcriptome-wide analysis of albino and normally pigmented S. glanis using four tissues (skin, dorsal fin, whole eye and liver) to identify genes associated with albinism by exploring patterns of differential expression (DE) and differential alternative splicing (DAS). Multi-tissue analyses revealed a large number of genes in skin (n = 1355) and fin (n = 614) tissue associated with the albino phenotype in S. glanis, while the number of DE genes in eye and liver tissues was lower (n = 188, n = 189, respectively). Several DE genes across multiple tissues were detected as the most promising candidates (e.g., hsp4, hsp90b1, raph1, uqcrfs1, adcy-family and wnt-family) potentially causally linked to the albino phenotype in Wels catfish. Moreover, our findings supported earlier observations of physiological differences between albino and normally pigmented individuals, particularly in energy metabolism and immune response. In contrast, there were only a few pigmentation-related genes observed among DAS genes (4 in skin, 2 in fin), the overlap between DAS and DE genes was low (n = 25) and did not include known pigmentation-related genes. This suggests that DAS and DE in Wels catfish are, to a large extent, independent processes, and the observed alternative splicing cases are probably not causally linked with albinism in S. glanis. This work provides the first transcriptome-wide multi-tissue insights into the albinism of Wels catfish and serves as a valuable resource for further understanding the genetic mechanisms of pigmentation in fish.
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Affiliation(s)
- M Y Ozerov
- Department of Aquatic Resources, Institute of Freshwater Research, Swedish University of Agricultural Sciences, 17893 Drottningholm, Sweden; Biodiversity Unit, University of Turku, 20014 Turku, Finland; Department of Biology, University of Turku, 20014 Turku, Finland
| | - K Noreikiene
- Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 46, 51006 Tartu, Estonia; Department of Botany and Genetics, Life Sciences Center, Vilnius University, 10257 Vilnius, Lithuania. https://twitter.com/snaudale
| | - S Kahar
- Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 46, 51006 Tartu, Estonia
| | - M Flajšhans
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, 38925 Vodňany, Czech Republic
| | - R Gross
- Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 46, 51006 Tartu, Estonia
| | - A Vasemägi
- Department of Aquatic Resources, Institute of Freshwater Research, Swedish University of Agricultural Sciences, 17893 Drottningholm, Sweden; Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 46, 51006 Tartu, Estonia.
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Svitačová K, Slavík O, Horký P. Pigmentation potentially influences fish welfare in aquaculture. Appl Anim Behav Sci 2023. [DOI: 10.1016/j.applanim.2023.105903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
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Valchářová T, Slavík O, Horký P, Stará A, Hrušková I, Maciak M, Pešta M, Velíšek J. Stressful Daylight: Differences in Diel Rhythmicity Between Albino and Pigmented Fish. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.890874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
In laboratory experiments, variously colored strains of animals, including those with albino phenotypes, are commonly used. The melanocortin theory suggests, however, that coloration phenotypes alter animal physiology and behavior. Animals with the albino phenotype show photoreceptor degradation associated with lowered visual accuracy, escape reactions, etc., presumably accompanied by prevailing nocturnal activity and lowered aggressiveness. This assumption was tested in small groups of albino and pigmented European catfish, Silurus glanis, during the diel cycle. The frequency of agonistic interactions was observed during mutual contests for shelters, and subsequently, blood plasma, brain, gill, and liver samples were collected to evaluate stress parameters. In an experimental arena with shelters, the light/dark rhythmicity of locomotor activity and aggressiveness of the two phenotypes were comparable; the peak was observed at night, and a lower peak was observed at dawn. In an experimental stream without shelters, the peak of locomotor activity occurred at night for only the pigmented phenotype. In the evaluation of 4 antioxidants and 1 oxidative stress indicator, representing a total of 15 indices, albino fish showed significant rhythmicity for 8 indices, whereas pigmented catfish showed significant rhythmicity for 5 indices. The production of blood stress parameters with the peak during the day occurred only in albino fish. A complex model was fitted with the aim of evaluating the links between behavioral and biochemical indices. Time periodicity was modeled using a sine wave and confirmed parallel courses of agonistic interactions in the catfish groups; the peak at dawn was associated with a 4.08-fold (conf. int. 3.53–4.7) increase in such interactions. The changes in glucose and superoxide dismutase concentrations varied with phenotype, while the effects of cortisol, lactate and catalase did not. In summary, the rhythmicity of locomotor activity and changes in the aggressiveness of catfish were influenced by shelter availability, and the effect of light-induced stress was more apparent in albino fish than in pigmented conspecific fish. The results suggested that laboratory-raised animals with pigmentation patterns naturally occurring in the wild show more reasonable values during experiments than those with an albino phenotype.
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Liu C, Liu H, Zhu X, Han D, Jin J, Yang Y, Xie S. The Effects of Dietary Arthrospira platensis on Oxidative Stress Response and Pigmentation in Yellow Catfish Pelteobagrus fulvidraco. Antioxidants (Basel) 2022; 11:antiox11061100. [PMID: 35739996 PMCID: PMC9219713 DOI: 10.3390/antiox11061100] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 05/27/2022] [Accepted: 05/30/2022] [Indexed: 12/10/2022] Open
Abstract
In aquaculture, fish are often exposed to several stress conditions, which will cause oxidative disorder and bring about health and quality problems. Arthrospira platensis contains abundant bioactive ingredients, which are beneficial for animal health. This study was conducted to investigate the effects of A. platensis on pigmentation, antioxidant capacity, and stress response after air exposure of fish. A total of 120 yellow catfish Pelteobagrus fulvidraco (initial weight 70.19 ± 0.13 g) were divided into three tanks per treatment and fed diets supplemented with 0 g kg−1 A. platensis (CON) and 20 g kg −1 A. platensis (AP) for 65 days. The results indicated that dietary A. platensis had no effects on the growth of yellow catfish. The AP diet significantly reduced lactic acid (LD) and cortisol levels stimulated by air exposure stress (p < 0.05). Dietary A. platensis significantly increased plasma superoxide dismutase (SOD) and glutathione peroxidase (GPX) activities and glutathione (GSH) contents, and the relative expression levels of sod and cat, to protect against oxidative stress caused by air exposure (p < 0.05). The AP diet significantly improved the relative expression level of nrf2 (nuclear factor erythroid-2 related factor 2), while the relative expression level of keap1 (kelch-like ECH associated protein 1) was downregulated, and the protein levels of liver Nrf2 were significantly increased after air exposure stimuli (p < 0.05). Dietary A. platensis significantly increased skin lutein contents, increased skin redness, yellowness and chroma (p < 0.05), and improved body color abnormalities after oxidative stress caused by air exposure stimuli. Skin yellowness was associated with lutein contents and the expression levels of some antioxidant genes to varying degrees. Overall, dietary A. platensis could be utilized as a feed additive to activate the antioxidant response, as well as alleviate oxidative stress and pigmentation disorder induced by air exposure.
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Affiliation(s)
- Cui Liu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haokun Liu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
- Correspondence: ; Tel.: +86-276-878-0060
| | - Xiaoming Zhu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China
| | - Dong Han
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China
| | - Junyan Jin
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
| | - Yunxia Yang
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
| | - Shouqi Xie
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (C.L.); (X.Z.); (D.H.); (J.J.); (Y.Y.); (S.X.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China
- Hubei Engineering Research Center for Aquatic Animal Nutrition and Feed, Wuhan 430072, China
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