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For: Berry H. Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation. Biophys J 2002;83:1891-901. [PMID: 12324410 PMCID: PMC1302281 DOI: 10.1016/s0006-3495(02)73953-2] [Citation(s) in RCA: 184] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Lauber N, Tichacek O, Narayanankutty K, De Martino D, Ruiz-Mirazo K. Collective catalysis under spatial constraints: Phase separation and size-scaling effects on mass action kinetics. Phys Rev E 2023;108:044410. [PMID: 37978605 DOI: 10.1103/physreve.108.044410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 09/07/2023] [Indexed: 11/19/2023]
2
Kumar P, Chakrabarti R. Dynamics of self-propelled tracer particles inside a polymer network. Phys Chem Chem Phys 2023;25:1937-1946. [PMID: 36541408 DOI: 10.1039/d2cp04253c] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
3
Scott S, Weiss M, Selhuber-Unkel C, Barooji YF, Sabri A, Erler JT, Metzler R, Oddershede LB. Extracting, quantifying, and comparing dynamical and biomechanical properties of living matter through single particle tracking. Phys Chem Chem Phys 2023;25:1513-1537. [PMID: 36546878 DOI: 10.1039/d2cp01384c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
4
Sahoo R, Theeyancheri L, Chakrabarti R. Transport of a self-propelled tracer through a hairy cylindrical channel: interplay of stickiness and activity. SOFT MATTER 2022;18:1310-1318. [PMID: 35060583 DOI: 10.1039/d1sm01693h] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
5
Maestri S, Merelli E, Pettini M. Agent-based models for detecting the driving forces of biomolecular interactions. Sci Rep 2022;12:1878. [PMID: 35115584 PMCID: PMC8814177 DOI: 10.1038/s41598-021-04205-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 12/16/2021] [Indexed: 11/22/2022]  Open
6
Speckner K, Weiss M. Single-Particle Tracking Reveals Anti-Persistent Subdiffusion in Cell Extracts. ENTROPY (BASEL, SWITZERLAND) 2021;23:892. [PMID: 34356433 PMCID: PMC8303845 DOI: 10.3390/e23070892] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/06/2021] [Accepted: 07/09/2021] [Indexed: 01/08/2023]
7
Angeles-Martinez L, Hatzimanikatis V. The influence of the crowding assumptions in biofilm simulations. PLoS Comput Biol 2021;17:e1009158. [PMID: 34292941 PMCID: PMC8297847 DOI: 10.1371/journal.pcbi.1009158] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 06/07/2021] [Indexed: 12/02/2022]  Open
8
Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P, Zhang J. Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit. eLife 2020;9:e55013. [PMID: 33201801 PMCID: PMC7671691 DOI: 10.7554/elife.55013] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 10/07/2020] [Indexed: 01/31/2023]  Open
9
Novikov S. Two-dimensional bimolecular recombination in amorphous organic semiconductors. Phys Chem Chem Phys 2020;22:1174-1180. [PMID: 31848542 DOI: 10.1039/c9cp05511h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
10
Kari J, Christensen SJ, Andersen M, Baiget SS, Borch K, Westh P. A practical approach to steady-state kinetic analysis of cellulases acting on their natural insoluble substrate. Anal Biochem 2019;586:113411. [PMID: 31520594 DOI: 10.1016/j.ab.2019.113411] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 08/26/2019] [Accepted: 08/28/2019] [Indexed: 10/26/2022]
11
Gschwend GC, Kazmierczak M, Olaya AJ, Brevet PF, Girault HH. Two dimensional diffusion-controlled triplet-triplet annihilation kinetics. Chem Sci 2019;10:7633-7640. [PMID: 31588315 PMCID: PMC6761882 DOI: 10.1039/c9sc00957d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 06/28/2019] [Indexed: 01/14/2023]  Open
12
Modeling of lactose enzymatic hydrolysis using Monte Carlo method. ELECTRON J BIOTECHN 2019. [DOI: 10.1016/j.ejbt.2019.04.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
13
Chew WX, Kaizu K, Watabe M, Muniandy SV, Takahashi K, Arjunan SNV. Surface reaction-diffusion kinetics on lattice at the microscopic scale. Phys Rev E 2019;99:042411. [PMID: 31108654 DOI: 10.1103/physreve.99.042411] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2018] [Indexed: 01/06/2023]
14
Du Y, Jiang H, Hou Z. Study of active Brownian particle diffusion in polymer solutions. SOFT MATTER 2019;15:2020-2031. [PMID: 30724318 DOI: 10.1039/c8sm02292e] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
15
Anand R, Agrawal M, Mattaparthi VS, Swaminathan R, Santra SB. Consequences of Heterogeneous Crowding on an Enzymatic Reaction: A Residence Time Monte Carlo Approach. ACS OMEGA 2019;4:727-736. [PMID: 31459357 PMCID: PMC6649177 DOI: 10.1021/acsomega.8b02863] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Accepted: 12/26/2018] [Indexed: 05/06/2023]
16
Montagnaro F, Balsamo M. Modelling CO2 adsorption dynamics onto amine-functionalised sorbents: A fractal-like kinetic perspective. Chem Eng Sci 2018. [DOI: 10.1016/j.ces.2018.08.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Woringer M, Darzacq X. Protein motion in the nucleus: from anomalous diffusion to weak interactions. Biochem Soc Trans 2018;46:945-956. [PMID: 30065106 PMCID: PMC6103463 DOI: 10.1042/bst20170310] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Revised: 05/02/2018] [Accepted: 05/14/2018] [Indexed: 12/12/2022]
18
Mohammadi Y, Penlidis A. “Optimulation” in Chemical Reaction Engineering: Oxidative Coupling of Methane as a Case Study. Ind Eng Chem Res 2018. [DOI: 10.1021/acs.iecr.8b01424] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
19
Multiscale Modeling of Diffusion in a Crowded Environment. Bull Math Biol 2017;79:2672-2695. [PMID: 28924915 DOI: 10.1007/s11538-017-0346-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 09/06/2017] [Indexed: 10/18/2022]
20
Stefferson MW, Norris SL, Vernerey FJ, Betterton MD, Hough LE. Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles. Phys Biol 2017;14:045008. [PMID: 28597848 DOI: 10.1088/1478-3975/aa7869] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
21
Kari J, Andersen M, Borch K, Westh P. An Inverse Michaelis–Menten Approach for Interfacial Enzyme Kinetics. ACS Catal 2017. [DOI: 10.1021/acscatal.7b00838] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
22
Garland J. Unravelling the complexity of signalling networks in cancer: A review of the increasing role for computational modelling. Crit Rev Oncol Hematol 2017;117:73-113. [PMID: 28807238 DOI: 10.1016/j.critrevonc.2017.06.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Revised: 06/01/2017] [Accepted: 06/08/2017] [Indexed: 02/06/2023]  Open
23
Meinecke L, Eriksson M. Excluded volume effects in on- and off-lattice reaction-diffusion models. IET Syst Biol 2017;11:55-64. [PMID: 28476973 PMCID: PMC8687331 DOI: 10.1049/iet-syb.2016.0021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Revised: 10/24/2016] [Accepted: 10/25/2016] [Indexed: 04/05/2024]  Open
24
Smith S, Grima R. Fast simulation of Brownian dynamics in a crowded environment. J Chem Phys 2017;146:024105. [DOI: 10.1063/1.4973606] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
25
Cianci C, Smith S, Grima R. Molecular finite-size effects in stochastic models of equilibrium chemical systems. J Chem Phys 2016;144:084101. [PMID: 26931675 DOI: 10.1063/1.4941583] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
26
Lenzi EK, Ribeiro HV, Tateishi AA, Zola RS, Evangelista LR. Anomalous diffusion and transport in heterogeneous systems separated by a membrane. Proc Math Phys Eng Sci 2016;472:20160502. [PMID: 27956877 DOI: 10.1098/rspa.2016.0502] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
27
Feng X, Chen A, Wang J, Zhao N, Hou Z. Understanding Protein Diffusion in Polymer Solutions: A Hydration with Depletion Model. J Phys Chem B 2016;120:10114-10123. [DOI: 10.1021/acs.jpcb.6b06248] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
28
Wang ZW, Xu F, Manchala KR, Sun Y, Li Y. Fractal-like kinetics of the solid-state anaerobic digestion. WASTE MANAGEMENT (NEW YORK, N.Y.) 2016;53:55-61. [PMID: 27132655 DOI: 10.1016/j.wasman.2016.04.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2016] [Revised: 04/13/2016] [Accepted: 04/15/2016] [Indexed: 06/05/2023]
29
Mourão MA, Hakim JB, Schnell S. Connecting the dots: the effects of macromolecular crowding on cell physiology. Biophys J 2016;107:2761-2766. [PMID: 25517143 DOI: 10.1016/j.bpj.2014.10.051] [Citation(s) in RCA: 97] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2014] [Revised: 10/17/2014] [Accepted: 10/23/2014] [Indexed: 10/25/2022]  Open
30
Rohrs JA, Wang P, Finley SD. Predictive Model of Lymphocyte-Specific Protein Tyrosine Kinase (LCK) Autoregulation. Cell Mol Bioeng 2016;9:351-367. [PMID: 27547268 PMCID: PMC4978775 DOI: 10.1007/s12195-016-0438-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 04/12/2016] [Indexed: 12/29/2022]  Open
31
Angeles-Martinez L, Theodoropoulos C. A Lattice-Boltzmann scheme for the simulation of diffusion in intracellular crowded systems. BMC Bioinformatics 2015;16:353. [PMID: 26530635 PMCID: PMC4632338 DOI: 10.1186/s12859-015-0769-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 10/08/2015] [Indexed: 11/10/2022]  Open
32
Ernst D, Köhler J, Weiss M. Probing the type of anomalous diffusion with single-particle tracking. Phys Chem Chem Phys 2015;16:7686-91. [PMID: 24651929 DOI: 10.1039/c4cp00292j] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
33
Alarcón T. Stochastic quasi-steady state approximations for asymptotic solutions of the chemical master equation. J Chem Phys 2015;140:184109. [PMID: 24832255 DOI: 10.1063/1.4874653] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
34
Zhdanov VP, Höök F. Kinetics of enzymatic reactions in lipid membranes containing domains. Phys Biol 2015;12:026003. [PMID: 25743228 DOI: 10.1088/1478-3975/12/2/026003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
35
ElKalaawy N, Wassal A. Methodologies for the modeling and simulation of biochemical networks, illustrated for signal transduction pathways: a primer. Biosystems 2015;129:1-18. [PMID: 25637875 DOI: 10.1016/j.biosystems.2015.01.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Revised: 01/23/2015] [Accepted: 01/23/2015] [Indexed: 01/30/2023]
36
Aon MA, Cortassa S. Function of metabolic and organelle networks in crowded and organized media. Front Physiol 2015;5:523. [PMID: 25653618 PMCID: PMC4300868 DOI: 10.3389/fphys.2014.00523] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Accepted: 12/19/2014] [Indexed: 11/13/2022]  Open
37
Stiehl O, Weidner-Hertrampf K, Weiss M. Macromolecular crowding impacts on the diffusion and conformation of DNA hairpins. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;91:012703. [PMID: 25679639 DOI: 10.1103/physreve.91.012703] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Indexed: 06/04/2023]
38
Echeverria C, Kapral R. Enzyme kinetics and transport in a system crowded by mobile macromolecules. Phys Chem Chem Phys 2015;17:29243-50. [DOI: 10.1039/c5cp05056a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
39
Berry H, Soula HA. Spatial distributions at equilibrium under heterogeneous transient subdiffusion. Front Physiol 2014;5:437. [PMID: 25429273 PMCID: PMC4228838 DOI: 10.3389/fphys.2014.00437] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Accepted: 10/27/2014] [Indexed: 11/18/2022]  Open
40
Furlan G, Minowa T, Hanagata N, Kataoka-Hamai C, Kaizuka Y. Phosphatase CD45 both positively and negatively regulates T cell receptor phosphorylation in reconstituted membrane protein clusters. J Biol Chem 2014;289:28514-25. [PMID: 25128530 DOI: 10.1074/jbc.m114.574319] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
41
Basit H, Lopez SG, Keyes TE. Fluorescence correlation and lifetime correlation spectroscopy applied to the study of supported lipid bilayer models of the cell membrane. Methods 2014;68:286-99. [DOI: 10.1016/j.ymeth.2014.02.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2013] [Revised: 01/21/2014] [Accepted: 02/06/2014] [Indexed: 10/25/2022]  Open
42
Soula H, Caré B, Beslon G, Berry H. Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium. Biophys J 2014;105:2064-73. [PMID: 24209851 DOI: 10.1016/j.bpj.2013.07.023] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2013] [Revised: 07/04/2013] [Accepted: 07/16/2013] [Indexed: 01/06/2023]  Open
43
Shang BZ, Chu JW. Kinetic Modeling at Single-Molecule Resolution Elucidates the Mechanisms of Cellulase Synergy. ACS Catal 2014. [DOI: 10.1021/cs500126q] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
44
Pitulice L, Vilaseca E, Pastor I, Madurga S, Garcés JL, Isvoran A, Mas F. Monte Carlo simulations of enzymatic reactions in crowded media. Effect of the enzyme-obstacle relative size. Math Biosci 2014;251:72-82. [DOI: 10.1016/j.mbs.2014.03.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2013] [Revised: 02/23/2014] [Accepted: 03/18/2014] [Indexed: 01/21/2023]
45
Balcells C, Pastor I, Vilaseca E, Madurga S, Cascante M, Mas F. Macromolecular crowding effect upon in vitro enzyme kinetics: mixed activation-diffusion control of the oxidation of NADH by pyruvate catalyzed by lactate dehydrogenase. J Phys Chem B 2014;118:4062-8. [PMID: 24660904 DOI: 10.1021/jp4118858] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
46
Berry H, Chaté H. Anomalous diffusion due to hindering by mobile obstacles undergoing Brownian motion or Orstein-Ulhenbeck processes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;89:022708. [PMID: 25353510 DOI: 10.1103/physreve.89.022708] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Indexed: 06/04/2023]
47
Weiss M. Crowding, Diffusion, and Biochemical Reactions. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2014;307:383-417. [DOI: 10.1016/b978-0-12-800046-5.00011-4] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
48
Mourão M, Kreitman D, Schnell S. Unravelling the impact of obstacles in diffusion and kinetics of an enzyme catalysed reaction. Phys Chem Chem Phys 2014;16:4492-503. [DOI: 10.1039/c3cp52417e] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
49
Tummler K, Lubitz T, Schelker M, Klipp E. New types of experimental data shape the use of enzyme kinetics for dynamic network modeling. FEBS J 2013;281:549-71. [PMID: 24034816 DOI: 10.1111/febs.12525] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2013] [Revised: 08/27/2013] [Accepted: 09/10/2013] [Indexed: 01/21/2023]
50
Vasilescu C, Olteanu M, Flondor P, Calin GA. Fractal-like kinetics of intracellular enzymatic reactions: a chemical framework of endotoxin tolerance and a possible non-specific contribution of macromolecular crowding to cross-tolerance. Theor Biol Med Model 2013;10:55. [PMID: 24034421 PMCID: PMC3849556 DOI: 10.1186/1742-4682-10-55] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2013] [Accepted: 09/10/2013] [Indexed: 12/26/2022]  Open
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