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Okuda M, Ohta K, Tominaga K. Vibrational dynamics of azide-derivatized amino acids studied by nonlinear infrared spectroscopy. J Chem Phys 2015; 142:212418. [DOI: 10.1063/1.4917032] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Affiliation(s)
- Masaki Okuda
- Graduate School of Science, Kobe University, Rokkodai-cho 1-1, Nada. Kobe 657-8501, Japan
| | - Kaoru Ohta
- Moleuclar Photoscience Research Center, Kobe University, Rokkodai-cho 1-1, Nada. Kobe 657-8501, Japan
| | - Keisuke Tominaga
- Graduate School of Science, Kobe University, Rokkodai-cho 1-1, Nada. Kobe 657-8501, Japan
- Moleuclar Photoscience Research Center, Kobe University, Rokkodai-cho 1-1, Nada. Kobe 657-8501, Japan
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2
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Shattuck JT, Schneck JR, Chieffo LR, Erramilli S, Ziegler LD. Dispersed Three-Pulse Infrared Photon Echoes of Nitrous Oxide in Water and Octanol. J Phys Chem B 2013; 117:15774-85. [DOI: 10.1021/jp4065533] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- J. T. Shattuck
- Department
of Chemistry and the Photonics Center, Boston University, 590 Commonwealth
Avenue, Boston, Massachusetts 02215, United States
| | - J. R. Schneck
- Department
of Chemistry and the Photonics Center, Boston University, 590 Commonwealth
Avenue, Boston, Massachusetts 02215, United States
| | - L. R. Chieffo
- Department
of Chemistry and the Photonics Center, Boston University, 590 Commonwealth
Avenue, Boston, Massachusetts 02215, United States
| | - S. Erramilli
- Department
of Physics and Department of Biomedical Engineering and the Photonics
Center, Boston University, 590 Commonwealth Avenue, Boston, Massachusetts 02215, United States
| | - L. D. Ziegler
- Department
of Chemistry and the Photonics Center, Boston University, 590 Commonwealth
Avenue, Boston, Massachusetts 02215, United States
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3
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Hamm P, Zewail AH, Fleming GR. A tribute to Robin Hochstrasser. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.05.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Torii H, Giorgini MG, Musso M. Merged- and Separate-Band Behavior of the C═O Stretching Band in N,N-Dimethylformamide Isotopic Liquid Mixtures: DMF/DMF-d1, DMF/DMF-d6, and DMF/DMF-13C═O. J Phys Chem B 2011; 116:353-66. [DOI: 10.1021/jp209119e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hajime Torii
- Department of Chemistry, School of Education, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan
| | - Maria Grazia Giorgini
- Dipartimento di Chimica Fisica ed Inorganica, Università di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
| | - Maurizio Musso
- Fachbereich Materialforschung und Physik, Abteilung Physik und Biophysik, Universität Salzburg, Hellbrunnerstrasse 34, A-5020 Salzburg, Austria
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6
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Bian H, Li J, Wen X, Sun Z, Song J, Zhuang W, Zheng J. Mapping Molecular Conformations with Multiple-Mode Two-Dimensional Infrared Spectroscopy. J Phys Chem A 2011; 115:3357-65. [DOI: 10.1021/jp200516p] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Hongtao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Jiebo Li
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Xiewen Wen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Jian Song
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Wei Zhuang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Junrong Zheng
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
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7
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Ma X, Cai K, Wang J. Dynamical Structures of Glycol and Ethanedithiol Examined by Infrared Spectroscopy, Ab Initio Computation, and Molecular Dynamics Simulations. J Phys Chem B 2011; 115:1175-87. [DOI: 10.1021/jp107752a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Xiaoyan Ma
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Kaicong Cai
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Jianping Wang
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
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8
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Meng K, Wang J. Anharmonic overtone and combination states of glycine and two model peptides examined by vibrational self-consistent field theory. Phys Chem Chem Phys 2011; 13:2001-13. [DOI: 10.1039/c0cp01177k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Tayama J, Ishihara A, Banno M, Ohta K, Saito S, Tominaga K. Temperature dependence of vibrational frequency fluctuation of N(3) (-) in D(2)O. J Chem Phys 2010; 133:014505. [PMID: 20614974 DOI: 10.1063/1.3428672] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
We have studied the temperature dependence of the vibrational frequency fluctuation of the antisymmetric stretching mode of N(3) (-) in D(2)O by three-pulse infrared (IR) photon echo experiments. IR pump-probe measurements were also carried out to investigate the population relaxation and the orientational relaxation of the same band. It was found that the time-correlation function (TCF) of the frequency fluctuation of this mode is well described by a biexponential function with a quasistatic term. The faster decay component has a time constant of about 0.1 ps, and the slower component varies from 1.4 to 1.1 ps in the temperature range from 283 to 353 K. This result indicates that liquid dynamics related to the frequency fluctuation are not highly sensitive to temperature. We discuss the relationship between the temperature dependence of the vibrational frequency fluctuation and that of the molecular motion of the system to investigate the molecular origin of the frequency fluctuation of the solute. We compare the temperature dependence of the frequency fluctuation with that of other dynamics such as dielectric relaxation of water. In contrast to the Debye dielectric relaxation time of D(2)O, the two time constants of the TCF of the frequency fluctuation do not exhibit strong temperature dependence. We propose a simple theoretical model for the frequency fluctuation in solutions based on perturbation theory and the dipole-dipole interaction between the vibrational mode of the solute and the solvent molecules. This model suggests that the neighboring solvent molecules in the vicinity of the solute play an important role in the frequency fluctuation. We suggest that the picosecond component of the frequency fluctuation results from structural fluctuation of the hydrogen-bonding network in water.
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Affiliation(s)
- Jumpei Tayama
- Graduate School of Science, Kobe University, Nada, Kobe 657-8501, Japan
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12
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Li S, Schmidt JR, Piryatinski A, Lawrence CP, Skinner JL. Vibrational spectral diffusion of azide in water. J Phys Chem B 2007; 110:18933-8. [PMID: 16986886 DOI: 10.1021/jp057568k] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Vibrational spectral diffusion denotes the time-dependent fluctuations of a solute's vibrational frequencies due to local environmental dynamics. Vibrational line shapes are weakly sensitive to spectral diffusion, whereas three-pulse vibrational echoes are much more sensitive. We report here on theoretical studies of spectral diffusion of the asymmetric stretch of the azide anion in heavy water. We run a classical molecular dynamics simulation of rigid azide in rigid water, and at every time step we calculate the azide's anharmonic asymmetric stretch frequency using an optimized quantum mechanics/molecular mechanics method developed earlier. This generates a frequency trajectory, which we use to calculate the absorption line shape and integrated three-pulse echo intensity. Our results for both the line width and the integrated echo intensity are in excellent agreement with experiment. Our calculated frequency time-correlation function is in excellent agreement with experiment for long times (greater than 250 fs) but differs considerably from experiment at short times; our theoretical correlation function has a very pronounced oscillation, presumably due to intermolecular azide-water hydrogen-bond stretching dynamics.
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Affiliation(s)
- Shuzhou Li
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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13
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Li S, Schmidt JR, Corcelli SA, Lawrence CP, Skinner JL. Approaches for the calculation of vibrational frequencies in liquids: comparison to benchmarks for azide/water clusters. J Chem Phys 2007; 124:204110. [PMID: 16774322 DOI: 10.1063/1.2200690] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Ultrafast vibrational spectroscopy experiments, together with molecular-level theoretical interpretation, can provide important information about the structure and dynamics of complex condensed phase systems, including liquids. The theoretical challenge is to calculate the instantaneous vibrational frequencies of a molecule in contact with a molecular environment, accurately and quickly, and to this end a number of different methods have been developed. In this paper we critically analyze these different methods by comparing their results to accurate benchmark calculations on azide/water clusters. We also propose an optimized quantum mechanics/molecular mechanics method, which for this problem is superior to the other methods.
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Affiliation(s)
- Shuzhou Li
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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Abstract
The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.
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Affiliation(s)
- Jianping Wang
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
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15
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Abstract
The experimental technique and applications of ultrafast two-dimensional infrared (2D IR) vibrational echo spectroscopy are presented. Using ultrashort infrared pulses and optical heterodyne detection to provide phase information, unique information can be obtained about the dynamics, interactions, and structures of molecular systems. The form and time evolution of the 2D IR spectrum permits examination of processes that cannot be studied with linear infrared absorption experiments. Three examples are given: organic solute-solvent complex chemical exchange, dynamics of the hydrogen-bond network of water, and assigning peaks in an IR spectrum of a mixture of species.
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Affiliation(s)
- Junrong Zheng
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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Torii H. Effects of Intermolecular Vibrational Coupling and Liquid Dynamics on the Polarized Raman and Two-Dimensional Infrared Spectral Profiles of Liquid N,N-Dimethylformamide Analyzed with a Time-Domain Computational Method. J Phys Chem A 2006; 110:4822-32. [PMID: 16599451 DOI: 10.1021/jp060014c] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A time-domain method for calculating polarized Raman and two-dimensional infrared (2D-IR) spectra that includes the effects of both the diagonal frequency modulations (of individual molecules in the system) and the off-diagonal (intermolecular) vibrational coupling is presented and applied to the case of the amide I band of liquid N,N-dimethylformamide. It is shown that the effect of the resonant off-diagonal vibrational coupling and the resulting delocalization of vibrational modes is clearly seen as the noncoincidence effect in the polarized Raman spectrum and some spectral features (especially as asymmetric intensity patterns) in the 2D-IR spectra. The type of 2D-IR spectra (concerning the polarization condition) most appropriate for observing this effect is discussed. On the basis of the agreement between the observed and calculated band profiles of the polarized Raman spectrum, the time dependence of the transient IR absorption anisotropy is also calculated. The method of evaluating the extent of delocalization of vibrational modes that is relevant to the features of these optical signals in the time and frequency domains is discussed. The nature of the molecular motions (concerning the liquid dynamics) that are effective on the diagonal frequency modulations is also examined.
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Affiliation(s)
- Hajime Torii
- Department of Chemistry, School of Education, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan.
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17
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Time-domain calculations of the polarized Raman and two-dimensional infrared spectra of liquid N,N-dimethylformamide. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.07.114] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Bordenyuk AN, Jayathilake H, Benderskii AV. Coherent Vibrational Quantum Beats as a Probe of Langmuir−Blodgett Monolayers. J Phys Chem B 2005; 109:15941-9. [PMID: 16853023 DOI: 10.1021/jp051632g] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We combine frequency- and femtosecond time-domain measurements of vibrational coherences for spectroscopic characterization of surface monolayer films, utilizing 3-wave mixing as the surface-selective technique. Frequency-domain spectra in the CH-stretch region are obtained by infrared + visible sum frequency generation (SFG). Time-domain coherences are measured using SFG free induction decay (SFG-FID), where a 75 fs IR pulse excites several vibrational modes and a delayed 40 fs visible pulse probes the oscillating surface polarization. A unified framework based on optical Bloch equations is used to simultaneously analyze the time- and frequency-domain data. We compare molecular organization of monolayers in different two-dimensional phases. Highly ordered films transferred at high surface pressure are dominated by two transitions in the frequency domain, CH3 symmetric stretch (2875 cm(-1)) and CH3-Fermi resonance with bend overtone (2935 cm(-1)), and a coherent quantum beat in the time-domain at the difference frequency (approximately 540 fs period). At lower surface pressure, relative amplitudes change and additional transitions emerge (CH3 asymmetric stretch and CH2 modes), indicating changes in molecular orientation and onset of disorder. Information redundancy in the combined frequency- and time-domain data allows more accurate determination of the spectral parameters than purely frequency- or time-domain techniques.
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Affiliation(s)
- Andrey N Bordenyuk
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, USA
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Maekawa H, Ohta K, Tominaga K. Vibrational dephasing of the –N C N– anti-symmetric stretching mode of carbodiimide studied by infrared photon echo method. J Mol Struct 2005. [DOI: 10.1016/j.molstruc.2004.10.085] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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Maekawa H, Ohta K, Tominaga K. Vibrational Population Relaxation of the −NCN− Antisymmetric Stretching Mode of Carbodiimide Studied by the Infrared Transient Grating Method. J Phys Chem A 2004. [DOI: 10.1021/jp047870d] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hiroaki Maekawa
- Graduate School of Science and Technology, CREST, JST, and Molecular Photoscience Research Center, Kobe University, Nada, Kobe 657-8501, Japan
| | - Kaoru Ohta
- Graduate School of Science and Technology, CREST, JST, and Molecular Photoscience Research Center, Kobe University, Nada, Kobe 657-8501, Japan
| | - Keisuke Tominaga
- Graduate School of Science and Technology, CREST, JST, and Molecular Photoscience Research Center, Kobe University, Nada, Kobe 657-8501, Japan
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Garcia-Viloca M, Nam K, Alhambra C, Gao J. Solvent and Protein Effects on the Vibrational Frequency Shift and Energy Relaxation of the Azide Ligand in Carbonic Anhydrase. J Phys Chem B 2004. [DOI: 10.1021/jp047526g] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mireia Garcia-Viloca
- Department of Chemistry, Supercomputing Institute, and Digital Technology Center, University of Minnesota, Minneapolis, Minnesota 55455, and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
| | - Kwangho Nam
- Department of Chemistry, Supercomputing Institute, and Digital Technology Center, University of Minnesota, Minneapolis, Minnesota 55455, and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
| | - Cristóbal Alhambra
- Department of Chemistry, Supercomputing Institute, and Digital Technology Center, University of Minnesota, Minneapolis, Minnesota 55455, and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
| | - Jiali Gao
- Department of Chemistry, Supercomputing Institute, and Digital Technology Center, University of Minnesota, Minneapolis, Minnesota 55455, and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
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Van Dao L, Lincoln C, Lowe M, Hannaford P. Spectrally resolved femtosecond two-color three-pulse photon echoes: Study of ground and excited state dynamics in molecules. J Chem Phys 2004; 120:8434-42. [PMID: 15267768 DOI: 10.1063/1.1651057] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
We report the use of spectrally resolved femtosecond two-color three-pulse photon echoes as a potentially powerful multidimensional technique for studying vibrational and electronic dynamics in complex molecules. The wavelengths of the pump and probe laser pulses are found to have a dramatic effect on the spectrum of the photon echo signal and can be chosen to select different sets of energy levels in the vibrational manifold, allowing a study of the dynamics and vibrational splitting in either the ground or the excited state. The technique is applied to studies of the dynamics of vibrational electronic states in the dye molecule Rhodamine 101 in methanol.
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Affiliation(s)
- Lap Van Dao
- Centre for Atom Optics and Ultrafast Spectroscopy, School of Biophysical Sciences and Electrical Engineering, Swinburne University of Technology, Melbourne, Australia 3122.
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Besemann DM, Meyer KA, Wright JC. Spectroscopic Characteristics of Triply Vibrationally Enhanced Four-Wave Mixing Spectroscopy. J Phys Chem B 2004. [DOI: 10.1021/jp049597l] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel M. Besemann
- Department of Chemistry, 1101 University Avenue, University of Wisconsin, Madison, Wisconsin 53706
| | - Kent A. Meyer
- Department of Chemistry, 1101 University Avenue, University of Wisconsin, Madison, Wisconsin 53706
| | - John C. Wright
- Department of Chemistry, 1101 University Avenue, University of Wisconsin, Madison, Wisconsin 53706
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Fang C, Wang J, Kim YS, Charnley AK, Barber-Armstrong W, Smith AB, Decatur SM, Hochstrasser RM. Two-Dimensional Infrared Spectroscopy of Isotopomers of an Alanine Rich α-Helix. J Phys Chem B 2004. [DOI: 10.1021/jp049893y] [Citation(s) in RCA: 129] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- C. Fang
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - J. Wang
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - Y. S. Kim
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - A. K. Charnley
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - W. Barber-Armstrong
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - A. B. Smith
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - S. M. Decatur
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
| | - R. M. Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and Department of Chemistry, Mount Holyoke College, South Hadley, Massachusetts 01075
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Ohta K, Maekawa H, Tominaga K. Vibrational Population Relaxation and Dephasing Dynamics of Fe(CN)64- in D2O with Third-Order Nonlinear Infrared Spectroscopy. J Phys Chem A 2004. [DOI: 10.1021/jp0369847] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Kaoru Ohta
- Graduate School of Science and Technology and Molecular Photoscience Research Center, Kobe University, Nada-ku, Kobe 657-8501, Japan, and CREST/JST
| | - Hiroaki Maekawa
- Graduate School of Science and Technology and Molecular Photoscience Research Center, Kobe University, Nada-ku, Kobe 657-8501, Japan, and CREST/JST
| | - Keisuke Tominaga
- Graduate School of Science and Technology and Molecular Photoscience Research Center, Kobe University, Nada-ku, Kobe 657-8501, Japan, and CREST/JST
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26
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Zhong Q, Owrutsky J. Vibrational energy relaxation and reorientation of azide ion pairs in DMSO. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2003.10.146] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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27
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Meyer KA, Besemann DM, Wright JC. Coherent two dimensional spectroscopy with triply vibrationally enhanced infrared four-wave mixing. Chem Phys Lett 2003. [DOI: 10.1016/j.cplett.2003.09.155] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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28
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Chen J, Park J, Hochstrasser RM. Nonlinear-Infrared Responses of the N−H Mode of Pyrrole in Carbon Tetrachloride by Heterodyned and Stimulated Echoes. J Phys Chem A 2003. [DOI: 10.1021/jp030468z] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jianxin Chen
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Jaehun Park
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Robin M. Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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30
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Probing the Spectral Diffusion of Vibrational Transitions of OCN- and SCN- in Methanol by Three-Pulse Infrared Photon Echo Spectroscopy. J Phys Chem A 2003. [DOI: 10.1021/jp034362f] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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31
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Dreyer J, Moran AM, Mukamel S. Coherent Three-Pulse Spectroscopy of Coupled Vibrations in a Rigid Dipeptide: Density Functional Theory Simulations. J Phys Chem B 2003. [DOI: 10.1021/jp030108b] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Jens Dreyer
- Department of Chemistry, Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627-0216
| | - Andrew M. Moran
- Department of Chemistry, Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627-0216
| | - Shaul Mukamel
- Department of Chemistry, Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627-0216
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32
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Rubtsov IV, Wang J, Hochstrasser RM. Dual frequency 2D-IR of peptide amide-A and amide-I modes. J Chem Phys 2003. [DOI: 10.1063/1.1570398] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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33
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Merchant KA, Xu QH, Thompson DE, Fayer MD. Frequency Selected Ultrafast Infrared Vibrational Echo Studies of Liquids, Glasses, and Proteins. J Phys Chem A 2002. [DOI: 10.1021/jp021145q] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- K. A. Merchant
- Department of Chemistry, Stanford University, Stanford, California 94305
| | - Qing-Hua Xu
- Department of Chemistry, Stanford University, Stanford, California 94305
| | - David E. Thompson
- Department of Chemistry, Stanford University, Stanford, California 94305
| | - M. D. Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305
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34
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Xu QH, Fayer MD. Temperature-dependent vibrational dephasing: Comparison of liquid and glassy solvents using frequency-selected vibrational echoes. J Chem Phys 2002. [DOI: 10.1063/1.1492280] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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Abstract
Linear optical spectroscopies have long been used to study the behavior of liquids. Laser technology has progressed to the point that it has become possible to perform nonlinear optical experiments that probe higher-order correlation functions in liquids, opening a new window into our understanding of the microscopic details of solution-phase processes. Here we review advances that have been made in recent years in employing higher-order electronic and vibrational spectroscopies to study liquid-state dynamics and structure.
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Affiliation(s)
- John T Fourkas
- Eugene F. Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, USA.
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36
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Yeremenko S, Baltuska A, de Haan F, Pshenichnikov MS, Wiersma DA. Frequency-resolved pump-probe characterization of femtosecond infrared pulses. OPTICS LETTERS 2002; 27:1171-1173. [PMID: 18026397 DOI: 10.1364/ol.27.001171] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A novel method for ultrashort IR pulse characterization is presented. The technique utilizes a frequency-resolved pump-probe geometry that is common in applications of ultrafast spectroscopy, without any modifications of the setup. The experimental demonstration of the method was carried out to characterize 70-fs IR pulses centered at 3 microm .
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37
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Hochstrasser RM, Ge NH, Gnanakaran S, Zanni MT. Two Dimensional Infrared Spectroscopy: Studies of the Dynamics of Structures with Femtosecond Pulse Fourier Transform Correlation Spectroscopy. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2002. [DOI: 10.1246/bcsj.75.1103] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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38
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Xu QH, Thompson DE, Merchant K, Fayer M. Separation of contributions to the third-order signal: ultrafast frequency-selected vibrational echo experiments on a metalloporphyrin-CO. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)00197-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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39
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Golonzka O, Khalil M, Demirdöven N, Tokmakoff A. Coupling and orientation between anharmonic vibrations characterized with two-dimensional infrared vibrational echo spectroscopy. J Chem Phys 2001. [DOI: 10.1063/1.1417504] [Citation(s) in RCA: 137] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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40
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Ge NH, Zanni MT, Hochstrasser RM. Effects of Vibrational Frequency Correlations on Two-Dimensional Infrared Spectra. J Phys Chem A 2001. [DOI: 10.1021/jp011768o] [Citation(s) in RCA: 139] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Nien-Hui Ge
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Martin T. Zanni
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Robin M. Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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41
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42
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Demirdöven N, Khalil M, Golonzka O, Tokmakoff A. Correlation Effects in the Two-Dimensional Vibrational Spectroscopy of Coupled Vibrations. J Phys Chem A 2001. [DOI: 10.1021/jp011215d] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- N. Demirdöven
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - M. Khalil
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - O. Golonzka
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - A. Tokmakoff
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
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43
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Thompson DE, Merchant KA, Fayer MD. Two-dimensional ultrafast infrared vibrational echo studies of solute–solvent interactions and dynamics. J Chem Phys 2001. [DOI: 10.1063/1.1376423] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
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44
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Kato T, Tanimura Y. Multi-dimensional vibrational spectroscopy measured from different phase-matching conditions. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)00466-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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45
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Solute–solvent interactions: two-dimensional ultrafast infrared vibrational echo experiments. Chem Phys Lett 2001. [DOI: 10.1016/s0009-2614(01)00432-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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46
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Zanni MT, Gnanakaran S, Stenger J, Hochstrasser RM. Heterodyned Two-Dimensional Infrared Spectroscopy of Solvent-Dependent Conformations of Acetylproline-NH2. J Phys Chem B 2001. [DOI: 10.1021/jp0100093] [Citation(s) in RCA: 183] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Martin T. Zanni
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - S. Gnanakaran
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Jens Stenger
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Robin M. Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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47
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Zadoyan R, Kohen D, Lidar D, Apkarian V. The manipulation of massive ro-vibronic superpositions using time–frequency-resolved coherent anti-Stokes Raman scattering (TFRCARS): from quantum control to quantum computing. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00270-1] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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48
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Piryatinski A, Chernyak V, Mukamel S. Vibrational-exciton relaxation probed by three-pulse echoes in polypeptides. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00231-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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49
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50
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Williams RB, Loring RF. Crossover from dynamic towards static line broadening in the classical mechanical vibrational photon echo. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00226-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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