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Reza MM, Durán-Hernández J, González-Cano B, Jara-Cortés J, López-Arteaga R, Cadena-Caicedo A, Muñoz-Rugeles L, Hernández-Trujillo J, Peon J. Primary Photophysics of Nicotinamide Chromophores in Their Oxidized and Reduced Forms. J Phys Chem B 2023; 127:8432-8445. [PMID: 37733881 DOI: 10.1021/acs.jpcb.3c03246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/23/2023]
Abstract
Nicotinamide adenine dinucleotide (NADH) is an important enzyme cofactor with emissive properties that allow it to be used in fluorescence microscopies to study cell metabolism. Its oxidized form NAD+, on the other hand, is considered to produce negligible fluorescence. In this contribution, we describe the photophysics of the isolated nicotinamidic system in both its reduced and oxidized states. This was achieved through the study of model molecules that do not carry the adenine nucleotide since its absorbance would overlap with the absorption spectrum of the nicotinamidic chromophores. We studied three model molecules: nicotinamide (niacinamide, an oxidized form without nitrogen substitution), the oxidized chromophore 1-benzyl-3-carbamoyl-pyridinium bromide (NBzOx), and its reduced form 1-benzyl-1,4-dihydronicotinamide (NBz). For a full understanding of the dynamics, we performed both femtosecond-resolved emission and transient absorption experiments. The oxidized systems, nicotinamide and NBzOx, have similar photophysics, where the originally excited bright state decays on an ultrafast timescale of less than 400 fs. The depopulation of this state is followed by excited-state positive absorption signals, which evolve in two timescales: the first one is from 1 to a few picoseconds and is followed by a second decaying component of 480 ps for nicotinamide in water and of 80-90 ps for nicotinamide in methanol and NBzOx in aqueous solution. The long decay times are assigned as the S1 lifetimes populated from the original higher-lying bright singlet, where this state is nonemissive but can be detected by transient absorption. While for NBzOx in aqueous solution and for nicotinamide in methanol, the S1 signal decays to the solvent-only level, for the aqueous solutions of nicotinamide, a small transient absorption signal remains after the 480 ps decay. This residual signal was assigned to a small population of triplet states formed during the slower S1 decay for nicotinamide in water. The experimental results were complemented by XMS-CASPT2 calculations, which reveal that in the oxidized forms, the rapid evolution of the initial π-π* state is due to a direct crossing with lower-energy dark n-π* singlet states. This coincides with the experimental observation of long-lived nonemissive states (80 to 480 ps depending on the system). On the other hand, the reduced model compound NBz has a long-lived emissive π-π* S1 state, which decays with a 510 ps time constant, similarly to the parent compound NADH. This is consistent with the XMS-CASPT2 calculations, which show that for the reduced chromophore, the dark states lie at higher energies than the bright π-π* S1 state.
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Affiliation(s)
- Mariana M Reza
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Jesús Durán-Hernández
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Beatriz González-Cano
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Jesús Jara-Cortés
- Unidad Académica de Ciencias Básicas e Ingenierías, Universidad Autónoma de Nayarit, Tepic 63155, México
| | - Rafael López-Arteaga
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Andrea Cadena-Caicedo
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Leonardo Muñoz-Rugeles
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
| | - Jesús Hernández-Trujillo
- Departamento de Física y Química Teórica, Facultad de Química, UNAM, Ciudad de México 04510, México
| | - Jorge Peon
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México
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Ma J, Denisov SA, Adhikary A, Mostafavi M. Ultrafast Processes Occurring in Radiolysis of Highly Concentrated Solutions of Nucleosides/Tides. Int J Mol Sci 2019; 20:ijms20194963. [PMID: 31597345 PMCID: PMC6801490 DOI: 10.3390/ijms20194963] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 09/30/2019] [Accepted: 10/01/2019] [Indexed: 12/18/2022] Open
Abstract
Among the radicals (hydroxyl radical (•OH), hydrogen atom (H•), and solvated electron (esol−)) that are generated via water radiolysis, •OH has been shown to be the main transient species responsible for radiation damage to DNA via the indirect effect. Reactions of these radicals with DNA-model systems (bases, nucleosides, nucleotides, polynucleotides of defined sequences, single stranded (ss) and double stranded (ds) highly polymeric DNA, nucleohistones) were extensively investigated. The timescale of the reactions of these radicals with DNA-models range from nanoseconds (ns) to microseconds (µs) at ambient temperature and are controlled by diffusion or activation. However, those studies carried out in dilute solutions that model radiation damage to DNA via indirect action do not turn out to be valid in dense biological medium, where solute and water molecules are in close contact (e.g., in cellular environment). In that case, the initial species formed from water radiolysis are two radicals that are ultrashort-lived and charged: the water cation radical (H2O•+) and prethermalized electron. These species are captured by target biomolecules (e.g., DNA, proteins, etc.) in competition with their inherent pathways of proton transfer and relaxation occurring in less than 1 picosecond. In addition, the direct-type effects of radiation, i.e., ionization of macromolecule plus excitations proximate to ionizations, become important. The holes (i.e., unpaired spin or cation radical sites) created by ionization undergo fast spin transfer across DNA subunits. The exploration of the above-mentioned ultrafast processes is crucial to elucidate our understanding of the mechanisms that are involved in causing DNA damage via direct-type effects of radiation. Only recently, investigations of these ultrafast processes have been attempted by studying concentrated solutions of nucleosides/tides under ambient conditions. Recent advancements of laser-driven picosecond electron accelerators have provided an opportunity to address some long-term puzzling questions in the context of direct-type and indirect effects of DNA damage. In this review, we have presented key findings that are important to elucidate mechanisms of complex processes including excess electron-mediated bond breakage and hole transfer, occurring at the single nucleoside/tide level.
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Affiliation(s)
- Jun Ma
- Department of Nuclear Science and Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 211106, China.
- Collaborative Innovation Center of Radiation Medicine of Jiangsu Higher Education Institutions, Soochow University, Suzhou 215000, China.
| | - Sergey A Denisov
- Laboratoire de Chimie Physique, UMR 8000 CNRS/Université Paris-Sud, Bât. 349, 91405 Orsay, CEDEX, France.
| | - Amitava Adhikary
- Department of Chemistry, Oakland University, 146 Library Drive, Rochester, MI 48309, USA.
| | - Mehran Mostafavi
- Laboratoire de Chimie Physique, UMR 8000 CNRS/Université Paris-Sud, Bât. 349, 91405 Orsay, CEDEX, France.
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Rivas N, Moriena G, Domenianni L, Hodak JH, Marceca E. Counterion effects on the ultrafast dynamics of charge-transfer-to-solvent electrons. Phys Chem Chem Phys 2017; 19:31581-31591. [PMID: 29170768 DOI: 10.1039/c7cp05903e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We performed femtosecond transient absorption (TA) experiments to monitor the solvation dynamics of charge-transfer-to-solvent (CTTS) electrons originating from UV photoexcitation of ammoniated iodide in close proximity to the counterions. Solutions of KI were prepared in liquid ammonia and TA experiments were carried out at different temperatures and densities, along the liquid-gas coexistence curve of the fluid. The results complement previous femtosecond TA work by P. Vöhringer's group in neat ammonia via multiphoton ionization. The dynamics of CTTS-detached electrons in ammonia was found to be strongly affected by ion pairing. Geminate recombination time constants as well as escape probabilities were determined from the measured temporal profiles and analysed as a function of the medium density. A fast unresolved (τ < 250 fs) increase of absorption related to the creation/thermalization of solvated electron species was followed by two decay components: one with a characteristic time around 10 ps, and a slower one that remains active for hundreds of picoseconds. While the first process is attributed to an early recombination of (I, e-) pairs, the second decay and its asymptote reflects the effect of the K+ counterion on the geminate recombination dynamics, rate and yield. The cation basically acts as an electron anchor that restricts the ejection distance, leading to solvent-separated counterion-electron species. The formation of (K+, NH3, e-) pairs close to the parent iodine atom brings the electron escape probability to very low values. Transient spectra of the electron species have also been estimated as a function of time by probing the temporal profiles at different wavelengths.
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Affiliation(s)
- N Rivas
- DQIAQF-FCEN, Universidad de Buenos Aires and INQUIMAE-CONICET, Ciudad Universitaria, 3er piso, Pabellón II, Buenos Aires (C1428EGA), Argentina.
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Examination of the formation process of pre-solvated and solvated electron in n-alcohol using femtosecond pulse radiolysis. Radiat Phys Chem Oxf Engl 1993 2016. [DOI: 10.1016/j.radphyschem.2016.02.022] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Young RM, Yandell MA, Neumark DM. Dynamics of electron solvation in I−(CH3OH)n clusters (4 ≤ n ≤ 11). J Chem Phys 2011; 134:124311. [DOI: 10.1063/1.3563720] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
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Lampre I, Pernot P, Bonin J, Mostafavi M. Comparison of solvation dynamics of electrons in four polyols. Radiat Phys Chem Oxf Engl 1993 2008. [DOI: 10.1016/j.radphyschem.2008.05.040] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Bonin J, Lampre I, Pernot P, Mostafavi M. Solvation dynamics of electron produced by two-photon ionization of liquid polyols. III. Glycerol. J Phys Chem A 2008; 112:1880-6. [PMID: 18266344 DOI: 10.1021/jp710203v] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The solvation dynamics of excess electrons in glycerol have been measured by the pump-probe femtosecond laser technique at 333 K. The electrons are produced by two-photon absorption at 263 nm. The change in the induced absorbance is followed up to 450 ps in the spectral range from 440 to 720 nm. The transient signals of electron solvation have been analyzed by two kinetic models: a stepwise mechanism and a continuous relaxation model, using a Bayesian data analysis method. The results are compared with those previously published for ethylene glycol (J. Phys. Chem. A 2006, 110, 175) and for propanediols (J. Phys. Chem. A 2007, 111, 4902). From the comparison, it is pointed out that solvation dynamics in glycerol is very fast despite its high viscosity. This is interpreted as the existence of efficient traps for the electrons in glycerol with low potential energy. The small shift of the absorption band of the excess electron indicates that the potential of these traps is very close to that corresponding to the fully solvated electron.
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Affiliation(s)
- J Bonin
- Laboratoire de Chimie Physique/ELYSE, Université Paris-Sud 11, UMR 8000, Bât. 349, Orsay, F-91405, France, and CNRS, Orsay, F-91405, France
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Thaller A, Laenen R, Laubereau A. The precursors of the solvated electron in methanol studied by femtosecond pump-repump-probe spectroscopy. J Chem Phys 2007; 124:024515. [PMID: 16422619 DOI: 10.1063/1.2155481] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using UV photoionization and delayed near-infrared reexcitation pulses, a novel time-, frequency-, and polarization-resolved pump-repump-probe spectroscopy is conducted in the probing range of 450-2400 nm with improved experimental accuracy. Both the generation process and relaxation dynamics following selective repumping of intermediate species of the solvated electron are investigated and analyzed self-consistently with the help of a kinetic model. New insight in the intermediates of the trapped electron is gained leading to a unique microscopic picture.
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Affiliation(s)
- A Thaller
- Physik Department E11, Technische Universität München, D-85748 Garching, Germany.
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Soroushian B, Lampre I, Bonin J, Pernot P, Pommeret S, Mostafavi M. Solvation dynamics of the electron produced by two-photon ionization of liquid polyols. 1. Ethylene glycol. J Phys Chem A 2007; 110:1705-17. [PMID: 16450999 DOI: 10.1021/jp0540149] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Solvated electrons have been produced in ethylene glycol by two-photon ionization of the solvent with 263 nm femtosecond laser pulses. The two-photon absorption coefficient of ethylene glycol at 263 nm is determined to be beta = (2.1 +/- 0.2) x 10(-11) m W(-1). The dynamics of electron solvation in ethylene glycol has been studied by pump-probe transient absorption spectroscopy. So, time-resolved absorption spectra ranging from 430 to 710 nm have been measured. A blue shift of the spectra is observed for the first tens of picoseconds. Using the Bayesian data analysis method, the observed solvation dynamics are reconstructed with different models: stepwise mechanisms, continuous relaxation models, or combinations of stepwise and continuous relaxation. Comparison between models is in favor of continuous relaxation, which is mainly governed by solvent molecular motions.
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Affiliation(s)
- B Soroushian
- Laboratoire de Chimie Physique/ELYSE, UMR 8000 CNRS/Université Paris-Sud, Centre d'Orsay, Bât. 349, 91405 Orsay Cedex, France
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Kammrath A, Griffin GB, Verlet JRR, Young RM, Neumark DM. Time-resolved photoelectron imaging of large anionic methanol clusters: (Methanol)n−(n∼145–535). J Chem Phys 2007; 126:244306. [PMID: 17614548 DOI: 10.1063/1.2747618] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of an excess electron in size-selected methanol clusters is studied via pump-probe spectroscopy with resolution of approximately 120 fs. Following excitation, the excess electron undergoes internal conversion back to the ground state with lifetimes of 260-175 fs in (CH3OH)n- (n=145-535) and 280-230 fs in (CD3OD)n- (n=210-390), decreasing with increasing cluster size. The clusters then undergo vibrational relaxation on the ground state on a time scale of 760+/-250 fs. The excited state lifetimes for (CH3OH)n- clusters extrapolate to a value of 157+/-25 fs in the limit of infinite cluster size.
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Affiliation(s)
- Aster Kammrath
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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Bonin J, Lampre I, Pernot P, Mostafavi M. Solvation dynamics of electron produced by two-photon ionization of liquid polyols. II. Propanediols. J Phys Chem A 2007; 111:4902-13. [PMID: 17511428 DOI: 10.1021/jp068323q] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Temporal evolution of transient absorption spectra of electrons produced by two-photon ionization of two isomers, propane-1,2-diol (12PD) and propane-1,3-diol (13PD), with 263 nm femtosecond laser pulses has been studied on picosecond time scale. The two-photon absorption coefficients of 12PD and 13PD at 263 nm were determined to be beta = (2.0 +/- 0.3) x 10(-11) and (2.4 +/- 0.3) x 10(-11) m W(-1), respectively. Time-resolved absorption spectra ranging from 440 to 720 nm have been measured, showing a blue shift for the first tens of picoseconds for both solvents. However, the observed solvation dynamics of electron appears faster in 13PD than in 12PD. The transient signals of electron solvation have then been reconstructed with different models (stepwise mechanism or continuous relaxation model) using a Bayesian data analysis method. Results are discussed, compared with those previously obtained in ethylene glycol (J. Phys. Chem. A 2006, 110, 1705) and corroborate the interpretation, according to which the solvation of electrons is mainly governed by continuous solvent molecular motions.
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Affiliation(s)
- J Bonin
- Laboratoire de Chimie Physique/ELYSE, Univ Paris-Sud, UMR 8000, Bât. 349, Orsay, France 91405, and CNRS, Orsay, France 91405
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Zhao J, Li B, Onda K, Feng M, Petek H. Solvated Electrons on Metal Oxide Surfaces. Chem Rev 2006; 106:4402-27. [PMID: 17031992 DOI: 10.1021/cr050173c] [Citation(s) in RCA: 120] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Jin Zhao
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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Zharikov AA, Fischer SF. Theory of electron solvation in polar liquids: A continuum model. J Chem Phys 2006; 124:054506. [PMID: 16468893 DOI: 10.1063/1.2165198] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The solvation of electrons in polar liquids is analyzed on the basis of an extended continuum model. In addition to the long-range electron-dipole interaction two short-range interactions are introduced. Among others one accounts for interactions with groups capable of forming hydrogen bonds and the second for quadrupolar characteristics of the liquid molecules. Both are induced by the orientation of the molecular dipole. Applying the scaling method a proper reaction coordinate is introduced and the solvation dynamics are discussed for the electron in the electronic ground state and after excitation to the p-type excited state. The observed spectral evolution of the transient absorption spectra, after two photon excitations for electrons in water and in methanol, is well described by this theory. An analytic estimate for the nonradiative deactivation from the electronically excited solvated electron is found to be consistent with an observed lifetime of 50 fs for the electron in water. The theory predicts an about three times slower internal conversion in methanol as solvent in comparison with water.
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Affiliation(s)
- Anatoly A Zharikov
- Physik Department T-38, Technische Universität München, D-85748 Garching, Germany.
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Wishart JF, Lall-Ramnarine SI, Raju R, Scumpia A, Bellevue S, Ragbir R, Engel R. Effects of functional group substitution on electron spectra and solvation dynamics in a family of ionic liquids. Radiat Phys Chem Oxf Engl 1993 2005. [DOI: 10.1016/j.radphyschem.2004.09.005] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Soroushian B, Lampre I, Pernot P, De Waele V, Pommeret S, Mostafavi M. Formation and geminate recombination of solvated electron upon two-photon ionisation of ethylene glycol. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.07.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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