Dimensionality and temperature dependence of the radiative lifetime of J-aggregates with Davydov splitting of the exciton band

Effect of hydrophilicity-imparting substituents on exciton delocalization in squaraine dye aggregates covalently templated to DNA Holliday junctions

Molecular aggregates exhibit emergent properties, including the collective sharing of electronic excitation energy known as exciton delocalization, that can be leveraged in applications such as quantum computing, optical information processing, and light harvesting. In a previous study, we found unexpectedly large excitonic interactions (quantified by the excitonic hopping parameter Jm,n) in DNA-templated aggregates of squaraine (SQ) dyes with hydrophilic-imparting sulfo and butylsulfo substituents. Here, we characterize DNA Holliday junction (DNA-HJ) templated aggregates of an expanded set of SQs and evaluate their optical properties in the context of structural heterogeneity. Specifically, we characterized the orientation of and Jm,n between dyes in dimer aggregates of non-chlorinated and chlorinated SQs. Three new chlorinated SQs that feature a varying number of butylsulfo substituents were synthesized and attached to a DNA-HJ via a covalent linker to form adjacent and transverse dimers. Various characteristics of the dye, including its hydrophilicity (in terms of log Po/w) and surface area, and of the substituents, including their local bulkiness and electron withdrawing capacity, were quantified computationally. The orientation of and Jm,n between the dyes were estimated using a model based on Kühn-Renger-May theory to fit the absorption and circular dichroism spectra. The results suggested that adjacent dimer aggregates of all the non-chlorinated and of the most hydrophilic chlorinated SQ dyes exhibit heterogeneity; that is, they form a mixture of dimers subpopulations. A key finding of this work is that dyes with a higher hydrophilicity (lower log Po/w) formed dimers with smaller Jm,n and large center-to-center dye distance (Rm,n). Also, the results revealed that the position of the dye in the DNA-HJ template, that is, adjacent or transverse, impacted Jm,n. Lastly, we found that Jm,n between symmetrically substituted dyes was reduced by increasing the local bulkiness of the substituent. This work provides insights into how to maintain strong excitonic coupling and identifies challenges associated with heterogeneity, which will help to improve control of these dye aggregates and move forward their potential application as quantum information systems.

Sulfolobus acidocaldarius Microvesicles Exhibit Unusually Tight Packing Properties as Revealed by Optical Spectroscopy

In this study, we used optical spectroscopy to characterize the physical properties of microvesicles released from the thermoacidophilic archaeon Sulfolobus acidocaldarius (Sa-MVs). The most abundant proteins in Sa-MVs are the S-layer proteins, which self-assemble on the vesicle surface forming an array of crystalline structures. Lipids in Sa-MVs are exclusively bipolar tetraethers. We found that when excited at 275 nm, intrinsic protein fluorescence of Sa-MVs at 23 °C has an emission maximum at 303 nm (or 296 nm measured at 75 °C), which is unusually low for protein samples containing multiple tryptophans and tyrosines. In the presence of 10–11 mM of the surfactant n-tetradecyl-β-d-maltoside (TDM), Sa-MVs were disintegrated, the emission maximum of intrinsic protein fluorescence was shifted to 312 nm, and the excitation maximum was changed from 288 nm to 280.5 nm, in conjunction with a significant decrease (>2 times) in excitation band sharpness. These data suggest that most of the fluorescent amino acid residues in native Sa-MVs are in a tightly packed protein matrix and that the S-layer proteins may form J-aggregates. The membranes in Sa-MVs, as well as those of unilamellar vesicles (LUVs) made of the polar lipid fraction E (PLFE) tetraether lipids isolated from S. acidocaldarius (LUV_PLFE), LUVs reconstituted from the tetraether lipids extracted from Sa-MVs (LUV_MV) and LUVs made of the diester lipids, were investigated using the probe 6-dodecanoyl-2-dimethylaminonaphthalene (Laurdan). The generalized polarization (GP) values of Laurdan in tightly packed Sa-MVs, LUV_MV, and LUV_PLFE were found to be much lower than those obtained from less tightly packed DPPC gel state, which echoes the previous finding that the GP values from tetraether lipid membranes cannot be directly compared with the GP values from diester lipid membranes, due to differences in probe disposition. Laurdan’s GP and red-edge excitation shift (REES) values in Sa-MVs and LUV_MV decrease with increasing temperature monotonically with no sign for lipid phase transition. Laurdan’s REES values are high (9.3–18.9 nm) in the tetraether lipid membrane systems (i.e., Sa-MVs, LUV_MV and LUV_PLFE) and low (0.4–5.0 nm) in diester liposomes. The high REES and low GP values suggest that Laurdan in tetraether lipid membranes, especially in the membrane of Sa-MVs, is in a very motionally restricted environment, bound water molecules and the polar moieties in the tetraether lipid headgroups strongly interact with Laurdan’s excited state dipole moment, and “solvent” reorientation around Laurdan’s chromophore in tetraether lipid membranes occurs very slowly compared to Laurdan’s lifetime.

Excimer Emission in J-Aggregates

An excimer in J-aggregates has been often considered as a self-trapped exciton originating from the free exciton excited on the same aggregate and relaxed through interaction with vibronic modes. Here we show that other types of excimers due to intermolecular off-diagonal interactions can be observed in J-aggregates of thiamonomethinecyanine dyes. These excimers arise owing to free excitons too, but they possess a longer formation time of more than 100 ps, indicating migration of free excitons to the excimer formation site, where they interact with a guest species in the ground state. Formation of the excimers occurs in solutions as a power law of concentration with an exponent of 1.5, showing that an excited aggregate should be twice longer than a ground-state guest species, consistent with the exciton coherence length of four molecules versus one dimer, respectively. Unlike the self-trapped exciton, lower temperatures lead to significant suppression of the observed excimer emission.

Expanded Theory of H- and J-Molecular Aggregates: The Effects of Vibronic Coupling and Intermolecular Charge Transfer

The electronic excited states of molecular aggregates and their photophysical signatures have long fascinated spectroscopists and theoreticians alike since the advent of Frenkel exciton theory almost 90 years ago. The influence of molecular packing on basic optical probes like absorption and photoluminescence was originally worked out by Kasha for aggregates dominated by Coulombic intermolecular interactions, eventually leading to the classification of J- and H-aggregates. This review outlines advances made in understanding the relationship between aggregate structure and photophysics when vibronic coupling and intermolecular charge transfer are incorporated. An assortment of packing geometries is considered from the humble molecular dimer to more exotic structures including linear and bent aggregates, two-dimensional herringbone and "HJ" aggregates, and chiral aggregates. The interplay between long-range Coulomb coupling and short-range charge-transfer-mediated coupling strongly depends on the aggregate architecture leading to a wide array of photophysical behaviors.

Direct Measurement of Energy Migration in Supramolecular Carbocyanine Dye Nanotubes

Exciton transport lengths in double-walled and bundled cylindrical 3,3'-bis- (2-sulfopropyl)-5,5',6,6'-tetrachloro-1,1'-dioctylbenzimida-carbocyanine (C8S3) J-aggregates were measured using direct imaging of fluorescence from individual aggregates deposited on solid substrates. Regions identified in confocal images were excited with a focused laser spot, and the resulting fluorescence emission was imaged onto an electron multiplying charged coupled device camera. A two-dimensional Gaussian fitting scheme was used to quantitatively compare the excitation beam profile to the broadened aggregate emission profiles. The double-walled tubes exhibit average exciton transport lengths of 140 nm, while exciton transport in the bundled nanotubes was found to be remarkably long, with distances reaching many hundreds of nanometers. A steady-state one-dimensional diffusion model for the broadening of the emission profiles yields diffusion coefficients of 120 nm(2) ps(-1) for the nanotubes and 7000 nm(2) ps(-1) for the aggregate bundles. The level of structural hierarchy dramatically affects the exciton transport capabilities in these artificial light-harvesting systems, and energy migration is not limited to a single dimension in J-aggregate bundles.

Mapping the Evolution of Spatial Exciton Coherence through Time-Resolved Fluorescence

Quantum coherence is expected to have a positive effect on the transfer efficiency of excitation energy through photosynthetic aggregates and conjugated polymers, but its significance to the functioning of these molecular assemblies remains largely unknown. We propose a new experimental means to monitor the coherence between distant molecular sites on a time scale relevant to energy transfer. Through numerical calculations, we demonstrate that the range of such spatial coherence continually scales as the 0-0 to 0-1 vibronic peak ratio in time-resolved fluorescence spectroscopy. As such, this observable allows one to monitor the coherent evolution of an excited state, displaying the large coherence length following optical excitation, and the subsequent dephasing over time.

Room-temperature fluorescence lifetime of pseudoisocyanine (PIC) J excitons with various aggregate morphologies in relation to microcavity polariton formation

The results of room-temperature fluorescence lifetime measurements are reported for the excitation of J aggregates (Js) of pseudoisocyanine chloride (PIC-Cl) prepared in potassium polyvinyl sulfate (PVS) polymer thin films, their aqueous solutions, and NaCl aqueous solutions. Variations of the microscopic morphologies of the aggregates were investigated. The results show that fluorescence decay features correlated to the morphology change. The observed fluorescence lifetime and quantum efficiency of PIC J aggregates (PIC-Js) in a NaCl aqueous solution were 310 ps and 28%, respectively. The lifetime of the fibril-shaped macroaggregates prepared in PVS thin films was below the instrumental time resolution of 5 ps, and the efficiency decreased to below 3%. The results indicate that PIC-Js prepared with PVS polymers have an increased nonradiative contribution to the excitation deactivation process. In particular, macro-Js with isolated fibril-shaped structures revealed nonradiative pathway(s) that are closely associated to the specific packaging morphology of the constituent meso-Js. The possibility of a destructive effect on the formation of cavity-polaritons is also discussed.

Collective fluorescence blinking in linear J-aggregates assisted by long-distance exciton migration

Fluorescence blinking corresponding to collective quenching of up to 100 dye monomers is reported for individual J-aggregates of a perylene bisimide (PBI) dye. This implies an exciton diffusion length up to 70 nm in these one-dimensional assemblies. The number of quenched monomers was directly measured by comparing the fluorescence brightness of the J-aggregates with that of noncoupled PBI molecules. This brightness analysis technique is useful for unraveling photophysical parameters of any individual fluorescent nanosystem.

A molecular spectroscopic description of optical spectra of J-aggregated dyes on gold nanoparticles

The extinction spectra of J-aggregated dyes on gold nanoparticles, which exhibit interferences between the plasmonic and dye resonances, are simulated by a quantum mechanical model that considers the dye transition to interact through transition-dipole coupling with a continuum of nanoparticle states. This alternative to the classical core-shell dielectric model provides the wavefunctions of the coupled molecule-nanoparticle system and qualitatively explains the enhancement of resonance Raman, fluorescence, and other light-driven processes of molecules adsorbed to nanoparticles.

Electrolyte-Induced Mesoscopic Aggregation of Thiacarbocyanine Dye in Aqueous Solution: Counterion Size Specificity

Countercation size specificity is presented for the electrolyte-induced aggregation of 3,3'-disulfopropyl-5,5'-dichloro-9-methyl thiacarbocyanine (TCC) dye in aqueous solution. Addition of electrolytes having a small monovalent cation (Na+, NH4+, or Cs+) induced pure H aggregates of TCC, whereas J aggregates were preferentially promoted by electrolytes with a large monovalent cation ([N(CH3)4]+ or [N(C2H5)4]+). The electrolyte-induced H aggregate (HS aggregate) differed spectroscopically from that spontaneously self-assembled in aqueous solution. Mesoscopic structure of the HS aggregates was revealed via polarized-light microscopy and atomic force microscopy; a rodlike morphology of 50-70 nm wide and tens to hundreds of micrometers long with very strong negative birefringence. A simple structural model based on semiempirical molecular orbital calculations can explain the aggregation behaviors: The anionic TCC monomer shows a considerable planar geometry between two benzothiazole end groups when it involves a sodium cation, which favors the H-type molecular arrangements in a face-to-face orientation. On the other hand, the TCC dye has a twisted conformation when it implicates a large tetramethylammonium cation, resulting in the formation of the J aggregates.

Controlled Formation of the Two-Dimensional TTBC J-Aggregates in an Aqueous Solution

Strong experimental and theoretical evidence was provided on the controlled formation of the two-dimensional J-aggregates that were assembled in the herringbone morphology. The exciton-band structure formation of 1,1',3,3'-tetraethyl-5,5',6,6'-tetrachlorobenzimidazolocarbocyanine (TTBC) J-aggregates was investigated in ionic (NaOH) aqueous solution at room temperature. The control was achieved by changing the [TTBC] at a given [NaOH], or vice versa, and was monitored through the changes in the absorption, fluorescence excitation, and emission spectra. Specific attention was paid to expose the excited-state structure and dynamics through simulations of the excitonic properties, which included diagonal energetic disorder and phonon-assisted exciton relaxation. Aggregates were characterized by an asymmetrically split Davydov pair, an H-band (approximately 500 nm, 1300 cm(-1) wide, Lorentzian-like) and a J-band (approximately 590 nm, 235 cm(-1) wide, with a band shape typical of a one-dimensional J-aggregate), whose relative intensities showed a strong dependence on the [TTBC]/[NaOH]. The H-band is favored by high [TTBC] or high [NaOH]. An explanation of the control on the aggregate formation was given by correlating the changes in the absorption with the structural modifications and the subsequent changes in the dynamics, which were induced by variations in the dye and NaOH concentrations. The J-band shape/width was attributed to disorder and disorder-induced intraband phonon-assisted exciton relaxation. The intraband processes in both bands were estimated to occur in the same time scale (about a picosecond). It has been suggested that the wide energetic gap between the Davydov split bands (3000 cm(-1)) could get bridged by the excitonic states of the loosely coupled chains, in addition to the monomeric species at low [TTBC]. Phonon-assisted interband relaxation, through the band gap states and/or directly from the H- to the J-band, are suggested for accounting the difference between the bandwidths and shapes of the two bands. Energy transfer between the H-band and the monomeric species is suggested as crucial for tuning the relative strengths of the two bands.

Luminescence Properties of the Mixed J-Aggregate of Oxacyanine Dye and Thiacyanine Dye. Formation of a Persistence-Type Aggregate

The monolayer assemblies incorporating the J-aggregates of oxacyanine dye, N,N'-dioctadecyloxacyanine perchlorate (S9), and thiacyanine dye, N,N'-dioctadecylthiacyanine perchlorate (S11), S9(J) + S11(J), have been fabricated by the Langmuir-Blodgett (LB) technique. The mole fraction X of S11, X = [S11]/([S9] + [S11]), was varied from 0 to 1. Steady-state absorption spectra, fluorescence spectra, and picosecond fluorescence decay curves of the monolayer assemblies have been measured. Spectroscopic properties of the monolayer assemblies incorporating the individual dye aggregates, S9 J-aggregate (S9(J), X = 0) or S11 J-aggregate (S11(J), X = 1), are characterized by a distinct J-band and resonance fluorescence at lambda(ab) = 403 nm and lambda(em) = 403 nm for S9(J) and lambda(ab) = 456 nm and lambda(em) = 463 nm for S11(J). On the other hand, absorption spectra of the S9(J) + S11(J) assemblies for X = 0.1-0.9 display two absorption bands, a shorter wavelength one and a longer wavelength one, whose peak positions are blue-shifted from those of the corresponding J-bands of the S9 J-aggregate and the S11 J-aggregate, respectively. Furthermore, fluorescence spectra are characterized by a single band (longer wavelength fluorescence) which is somewhat blue-shifted from the resonance fluorescence of the S11 J-aggregate. The fluorescence lifetimes of the S11 J-aggregate and isolated S11 molecules in LB films appear to be tau = 110 and 1900 ps, respectively, while the fluorescence lifetime of the longer wavelength fluorescence of the S9(J) + S11(J) assemblies takes practically a constant value of tau = 170-180 ps for X = 0.2-0.8. These observations would indicate that S9 and S11 molecules in the S9(J) + S11(J) assembly can form a specific mixed aggregate distinct from the individual S9 and S11 J-aggregates. From detailed considerations of the former works on luminescence properties of the S9 J-aggregate doped with isolated S11 molecules, as well as the mosaic-type mixed J-aggregate (M-aggregate) composed of a certain thiacyanine dye, 3,3'-disulfopropyl- 5,5'-dichlorothiacyanine sodium salt, and thiacarbocyanine dye, meso-substituted 3,3'-disulfopropyl-5,5'-dichlorothiacarbocyanine potassium salt, it is suggested that S9 and S11 can form a homogeneous aggregate of the persistence type (HP-aggregate). The HP-aggregate is distinguished from the M-aggregate because it is characterized by homogeneous mixing of two component dyes and persistence of two absorption bands.

Low-temperature dynamics of weakly localized Frenkel excitons in disordered linear chains

We calculate the temperature dependence of the fluorescence Stokes shift and the fluorescence decay time in linear Frenkel exciton systems resulting from the thermal redistribution of exciton population over the band states. The following factors, relevant to common experimental conditions, are accounted for in our kinetic model: (weak) localization of the exciton states by static disorder, coupling of the localized excitons to vibrations in the host medium, a possible nonequilibrium of the subsystem of localized Frenkel excitons on the time scale of the emission process, and different excitation conditions (resonant or nonresonant). A Pauli master equation, with microscopically calculated transition rates, is used to describe the redistribution of the exciton population over the manifold of localized exciton states. We find a counterintuitive nonmonotonic temperature dependence of the Stokes shift. In addition, we show that depending on experimental conditions, the observed fluorescence decay time may be determined by vibration-induced intraband relaxation, rather than radiative relaxation to the ground state. The model considered has relevance to a wide variety of materials, such as linear molecular aggregates, conjugated polymers, and polysilanes.

Temperature dependent fluorescence in disordered Frenkel chains: interplay of equilibration and local band-edge level structure

We model the optical dynamics in linear Frenkel exciton systems governed by scattering on static disorder and lattice vibrations and calculate the temperature dependent fluorescence spectrum and lifetime. The fluorescence Stokes shift shows a nonmonotonic behavior with temperature, which derives from the interplay of the local band-edge level structure and thermal equilibration. The model yields excellent fits to experiments performed on linear dye aggregates.