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Guo S, Wu Y, Aboueldahab M. Rapid oxygen isotopic exchange between bicarbonate and water during photosynthesis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2024; 255:112924. [PMID: 38688041 DOI: 10.1016/j.jphotobiol.2024.112924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Revised: 04/14/2024] [Accepted: 04/24/2024] [Indexed: 05/02/2024]
Abstract
Whether rapid oxygen isotopic exchange between bicarbonate and water occurs in photosynthesis is the key to determine the source of oxygen by classic 18O-labeled photosynthetic oxygen evolution experiments. Here we show that both Microcystis aeruginosa and Chlamydomonas reinhardtii utilize a significant proportion (>16%) of added bicarbonate as a carbon source for photosynthesis. However, oxygen isotopic signal in added bicarbonate cannot be traced in the oxygen in organic matter synthesized by these photosynthetic organisms. This contradicts the current photosynthesis theory, which states that photosynthetic oxygen evolution comes only from water, and oxygen in photosynthetic organic matter comes only from carbon dioxide. We conclude that the photosynthetic organisms undergo rapid exchange of oxygen isotope between bicarbonate and water during photosynthesis. At the same time, this study also provides isotopic evidence for a new mechanism that half of the oxygen in photosynthetic oxygen evolution comes from bicarbonate photolysis and half comes from water photolysis, which provides a new explanation for the bicarbonate effect, and suggests that the Kok-Joliot cycle of photosynthetic oxygen evolution, must be modified to include a molecule of bicarbonate in addition to one molecule of water which in turn must be incorporated into the cycle instead of two water molecules. Furthermore, this study provides a theoretical basis for constructing a newer artificial photosynthetic reactor coupling light reactions with the dark reactions.
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Affiliation(s)
- Shaogang Guo
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550081, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yanyou Wu
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550081, China.
| | - Mohamed Aboueldahab
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550081, China; University of Chinese Academy of Sciences, Beijing 100049, China; Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena 83523, Egypt
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Light-driven CO2 assimilation by photosystem II and its relation to photosynthesis. CHINESE JOURNAL OF CATALYSIS 2023. [DOI: 10.1016/s1872-2067(22)64170-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
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Allakhverdiev SI, Zharmukhamedov SK, Rodionova MV, Shuvalov VA, Dismukes C, Shen JR, Barber J, Samuelsson G. Vyacheslav (Slava) Klimov (1945-2017): A scientist par excellence, a great human being, a friend, and a Renaissance man. PHOTOSYNTHESIS RESEARCH 2018; 136:1-16. [PMID: 28921410 DOI: 10.1007/s11120-017-0440-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 08/15/2017] [Indexed: 06/07/2023]
Abstract
Vyacheslav Vasilevich (V.V.) Klimov (or Slava, as most of us called him) was born on January 12, 1945 and passed away on May 9, 2017. He began his scientific career at the Bach Institute of Biochemistry of the USSR Academy of Sciences (Akademy Nauk (AN) SSSR), Moscow, Russia, and then, he was associated with the Institute of Photosynthesis, Pushchino, Moscow Region, for about 50 years. He worked in the field of biochemistry and biophysics of photosynthesis. He is known for his studies on the molecular organization of photosystem II (PSII). He was an eminent scientist in the field of photobiology, a well-respected professor, and, above all, an outstanding researcher. Further, he was one of the founding members of the Institute of Photosynthesis in Pushchino, Russia. To most, Slava Klimov was a great human being. He was one of the pioneers of research on the understanding of the mechanism of light energy conversion and of water oxidation in photosynthesis. Slava had many collaborations all over the world, and he is (and will be) very much missed by the scientific community and friends in Russia as well as around the World. We present here a brief biography and some comments on his research in photosynthesis. We remember him as a friendly and enthusiastic person who had an unflagging curiosity and energy to conduct outstanding research in many aspects of photosynthesis, especially that related to PSII.
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Affiliation(s)
- Suleyman I Allakhverdiev
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290.
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276.
- Bionanotechnology Laboratory, Institute of Molecular Biology and Biotechnology, Azerbaijan National Academy of Sciences, Baku, Azerbaijan.
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991.
| | - Sergey K Zharmukhamedov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276
| | - Margarita V Rodionova
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, Russia, 127276
| | - Vladimir A Shuvalov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia, 142290
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Charles Dismukes
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ, 08854, USA
| | - Jian-Ren Shen
- Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama, 7008530, Japan
| | - James Barber
- Department of Life Sciences, Imperial College, London, SW7 2AZ, UK
| | - Göran Samuelsson
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, 90736, Umeå, Sweden
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Shevela D, Eaton-Rye JJ, Shen JR, Govindjee. Photosystem II and the unique role of bicarbonate: a historical perspective. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1134-51. [PMID: 22521596 DOI: 10.1016/j.bbabio.2012.04.003] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Revised: 04/05/2012] [Accepted: 04/06/2012] [Indexed: 12/11/2022]
Abstract
In photosynthesis, cyanobacteria, algae and plants fix carbon dioxide (CO(2)) into carbohydrates; this is necessary to support life on Earth. Over 50 years ago, Otto Heinrich Warburg discovered a unique stimulatory role of CO(2) in the Hill reaction (i.e., O(2) evolution accompanied by reduction of an artificial electron acceptor), which, obviously, does not include any carbon fixation pathway; Warburg used this discovery to support his idea that O(2) in photosynthesis originates in CO(2). During the 1960s, a large number of researchers attempted to decipher this unique phenomenon, with limited success. In the 1970s, Alan Stemler, in Govindjee's lab, perfected methods to get highly reproducible results, and observed, among other things, that the turnover of Photosystem II (PSII) was stimulated by bicarbonate ions (hydrogen carbonate): the effect would be on the donor or the acceptor, or both sides of PSII. In 1975, Thomas Wydrzynski, also in Govindjee's lab, discovered that there was a definite bicarbonate effect on the electron acceptor (the plastoquinone) side of PSII. The most recent 1.9Å crystal structure of PSII, unequivocally shows HCO(3)(-) bound to the non-heme iron that sits in-between the bound primary quinone electron acceptor, Q(A), and the secondary quinone electron acceptor Q(B). In this review, we focus on the historical development of our understanding of this unique bicarbonate effect on the electron acceptor side of PSII, and its mechanism as obtained by biochemical, biophysical and molecular biological approaches in many laboratories around the World. We suggest an atomic level model in which HCO(3)(-)/CO(3)(2-) plays a key role in the protonation of the reduced Q(B). In addition, we make comments on the role of bicarbonate on the donor side of PSII, as has been extensively studied in the labs of Alan Stemler (USA) and Vyacheslav Klimov (Russia). We end this review by discussing the uniqueness of bicarbonate's role in oxygenic photosynthesis and its role in the evolutionary development of O(2)-evolving PSII. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Affiliation(s)
- Dmitriy Shevela
- Centre for Organelle Research, University of Stavanger, Stavanger, Norway.
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Khorobrykh AA, Terentyev VV, Zharmukhamedov SK, Klimov VV. Redox interaction of Mn-bicarbonate complexes with reaction centres of purple bacteria. Philos Trans R Soc Lond B Biol Sci 2008; 363:1245-51; discussion 1251. [PMID: 17971330 DOI: 10.1098/rstb.2007.2221] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
It is found that dark reduction of photooxidized primary electron donor P870+ in reaction centres from purple anoxygenic bacteria (two non-sulphur Fe-oxidizing Rhodovulum iodosum and Rhodovulum robiginosum, Rhodobacter sphaeroides R-26 and sulphur alkaliphilic Thiorhodospira sibirica) is accelerated upon the addition of Mn2+ jointly with bicarbonate (30-75 mM). The effect is not observed if Mn2+ and HCO3(-) have been replaced by Mg2+ and HCO2(-), respectively. The dependence of the effect on bicarbonate concentration suggests that formation of Mn2+-bicarbonate complexes, Mn(HCO3)+ and/or Mn(HCO3)2, is required for re-reduction of P870+ with Mn2+. The results are considered as experimental evidence for a hypothesis on possible participation of Mn-bicarbonate complexes in the evolutionary origin of oxygenic photosynthesis in the Archean era.
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Affiliation(s)
- A A Khorobrykh
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
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Aoyama C, Suzuki H, Sugiura M, Noguchi T. Flash-Induced FTIR Difference Spectroscopy Shows No Evidence for the Structural Coupling of Bicarbonate to the Oxygen-Evolving Mn Cluster in Photosystem II. Biochemistry 2008; 47:2760-5. [DOI: 10.1021/bi702241t] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Chika Aoyama
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Hiroyuki Suzuki
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Miwa Sugiura
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
| | - Takumi Noguchi
- Institute of Materials Science, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan, and Department of Plant Biosciences, School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
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Tikhonov KG, Zastrizhnaya OM, Kozlov YN, Klimov VV. Composition and catalase-like activity of Mn(II)-bicarbonate complexes. BIOCHEMISTRY (MOSCOW) 2007; 71:1270-7. [PMID: 17140389 DOI: 10.1134/s0006297906110137] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The composition and catalase-like activity of Mn2+ complexes with bicarbonate were investigated with voltammetry and kinetic methods (by the rate of O2 production from H2O2). Three linear sections were revealed on the dependence of the reduction potential of Mn2+ on logarithm of bicarbonate concentration (logC(NaHCO3)) having slopes equal to 0 mV/logC(NaHCO3), -14 mV/logC(NaHCO3), and -59 mV/logC(NaHCO3), corresponding to Mn2+ aqua complex (Mn2+(aq)) and to Mn2+-bicarbonate complexes of the composition [Mn2+(HCO3(-))]+ (at concentration of HCO3(-) 10-100 mM) and [Mn2+(HCO3(-))2]0 (at concentration of HCO3(-) 100-600 mM). Comparison of HCO3(-) concentration needed for the catalase-like activity of Mn2+ with the electrochemical data showed that only electroneutral complex Mn2+(HCO3(-))2 catalyzed decomposition of H2O2, whereas positively charged Mn2+(aq) complex and [Mn2+(HCO3(-))]+ were not active. The catalase-like activity of Mn2+ did not appear upon substitution of anions of carbonic acids (acetate and formate) for HCO3(-). The rate of O2 production in the system Mn2+-HCO3(-)-H2O2 (pH 7.4) is proportional to the second power of Mn2+ concentration and to the fourth power of HCO3(-) concentration that indicates simultaneous involvement of two Mn2+(HCO3(-))2 complexes in the reaction of H2O2 decomposition.
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Affiliation(s)
- K G Tikhonov
- Institute of Basic Biological Problems, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
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Kozlov YN, Zharmukhamedov SK, Tikhonov KG, Dasgupta J, Kazakova AA, Charles Dismukes G, Klimov VV. Oxidation potentials and electron donation to photosystem II of manganese complexes containing bicarbonate and carboxylate ligands. Phys Chem Chem Phys 2004. [DOI: 10.1039/b406569g] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Klimov VV, Baranov SV. Bicarbonate requirement for the water-oxidizing complex of photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA 2001; 1503:187-96. [PMID: 11115633 DOI: 10.1016/s0005-2728(00)00222-x] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
It is well established that bicarbonate stimulates electron transfer between the primary and secondary electron acceptors, Q(A) and Q(B), in formate-inhibited photosystem II; the non-heme Fe between Q(A) and Q(B) plays an essential role in the bicarbonate binding. Strong evidence of a bicarbonate requirement for the water-oxidizing complex (WOC), both O2 evolving and assembling from apo-WOC and Mn2+, of photosystem II (PSII) preparations has been presented in a number of publications during the last 5 years. The following explanations for the involvement of bicarbonate in the events on the donor side of PSII are considered: (1) bicarbonate serves as an electron donor (alternative to water or as a way of involvement of water molecules in the oxidative reactions) to the Mn-containing O2 center; (2) bicarbonate facilitates reassembly of the WOC from apo-WOC and Mn2+ due to formation of the complexes MnHCO3+ and Mn(HCO3)2 leading to an easier oxidation of Mn2+ with PSII; (3) bicarbonate is an integral component of the WOC essential for its function and stability; it may be considered a direct ligand to the Mn cluster; (4) the WOC is stabilized by bicarbonate through its binding to other components of PSII.
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Affiliation(s)
- V V Klimov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, 142290, Moscow Region, Russia.
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