Ligand photolysis and recombination of Fe(II)protoporphyrin IX complexes in tetramethylene sulfoxide

A Future Perspective on Phototriggered Isomerizations of Transition Metal Sulfoxides and Related Complexes

Photochromic molecules are examples of light-activated bistable molecules. We highlight the design criteria for a class of ruthenium and osmium sulfoxide complexes that undergo phototriggered isomerization of the bound sulfoxide. The mode of action in these complexes is an excited-state isomerization of the sulfoxide from S-bonded to O-bonded. We discuss the basic mechanism for this transformation and highlight specific examples that demonstrate the effectiveness and efficiency of the isomerization. We subsequently discuss future research directions within the field of phototriggered sulfoxide isomerizations on transition metal polypyridine complexes. These efforts involve new synthetic directions, including the choice of metal as well as new ambidentate ligands for isomerization.

Heterogeneous kinetics of the carbon monoxide association and dissociation reaction to nitrophorin 4 and 7 coincide with structural heterogeneity of the gate-loop

NO is an important signaling molecule in human tissue. However, the mechanisms by which this molecule is controlled and directed are currently little understood. Nitrophorins (NPs) comprise a group of ferriheme proteins originating from blood-sucking insects that are tailored to protect and deliver NO via coordination to and release from the heme iron. Therefore, the kinetics of the association and dissociation reactions were studied in this work using the ferroheme-CO complexes of NP4, NP4(D30N), and NP7 as isoelectronic models for the ferriheme-NO complexes. The kinetic measurements performed by nanosecond laser-flash-photolysis and stopped-flow are accompanied by resonance Raman and FT-IR spectroscopy to characterize the carbonyl species. Careful analysis of the CO rebinding kinetics reveals that in NP4 and, to a larger extent, NP7 internal gas binding cavities are located, which temporarily trap photodissociated ligands. Moreover, changes in the free energy barriers throughout the rebinding and release pathway upon increase of the pH are surprisingly small in case of NP4. Also in case of NP4, a heterogeneous kinetic trace is obtained at pH 7.5, which corresponds to the presence of two carbonyl species in the heme cavity that are seen in vibrational spectroscopy and that are due to the change of the distal heme pocket polarity. Quantification of the two species from FT-IR spectra allowed the fitting of the kinetic traces as two processes, corresponding to the previously reported open and closed conformation of the A-B and G-H loops. With the use of the A-B loop mutant NP4(D30N), it was confirmed that the kinetic heterogeneity is controlled by pH through the disruption of the H-bond between the Asp30 side chain and the Leu130 backbone carbonyl. Overall, this first study on the slow phase of the dynamics of diatomic gas molecule interaction with NPs comprises an important experimental contribution for the understanding of the dynamics involved in the binding/release processes of NO/CO in NPs.

Sulfoxide as a ligand in iron(II) porphyrinates: S- or O-bound?

In order to study the bonding of sulfoxides to iron(II) porphyrinates, an equilibrium study of Fe(TPP) with tetramethylenesulfoxide (TMSO) has been performed. UV-vis spectra at different concentrations of TMSO have shown distinct character belonging to three species: four-coordinate Fe(II)(TPP), five-coordinate [Fe(II)(TPP)(TMSO)], and six-coordinate [Fe(II)(TPP)(TMSO)2]. The isosbestic points for the low TMSO concentrations suggest that the equilibrium constant K1 is much larger than K2. Analysis of spectral data by the nonlinear least-squares program SQUAD gives K1 = 267 and K2 approximately 1. Even though the five-coordinate species is the dominant species under the synthetic conditions, only the six-coordinate species was crystallized and characterized by an X-ray diffraction study. [Fe(TPP)(TMSO)2] (C52H44Fe-N4O2S2): monoclinic, P2(1)/c, a = 11.2580(3) A, b = 15.9262(5) A, c = 12.3930(4) A, beta = 116.246(1) degrees , V = 1992.95(10) A3, Z = 2. X-ray crystallography demonstrates the complex is a low-spin bis-TMSO ligated species. The average Fe-Np distance is 1.999(4) A. The most important feature is that TMSO is coordinated to iron(II) by the sulfur donors, not oxygen. The Fe-S distance is 2.2220(3) A.

Toward understanding the inactivation mechanism of monooxygenase P450 BM-3 by organic cosolvents: A molecular dynamics simulation study

Cytochrome P450 BM-3 from Bacillus megaterium is an extensively studied enzyme for industrial applications. A major focus of current protein engineering research is directed to improving the catalytic performance of P450 BM-3 toward nonnatural substrates of industrial importance in the presence of organic solvents or cosolvents. For the latter reason, it is important to study the effect of organic cosolvent molecules on the structure and dynamics of the enzyme, in particular, the effect of cosolvent molecules on the active site's structure and dynamics. In this paper, we have studied, using molecular dynamics (MD) simulations, the F87A mutant of P450 BM-3 in the presence of DMSO as cosolvent, to understand the role of the F87A substitution for its catalytic activity. This mutant exhibits an altered regioselectivity and substrate specificity compared with wild-type; however, it has lower tolerance toward DMSO. The simulation results offer an explanation for the DMSO sensitivity of the F87A mutant. Our simulation results show that the F87 side chain prevents the disturbance of the water molecule bound to the heme iron by DMSO molecules. The absence of the phenyl ring in F87A mutant promotes interactions of the DMSO molecule with the heme iron resulting in water displacement by DMSO at the catalytic heme center.

Ligand binding subsequent to CO photolysis of methionine-modified cytochrome c

In this report the kinetics of CO recombination to ferrocytochrome c in which Met80 has been oxidized to a sulfoxide are examined. Transient optical difference spectra suggest that the species formed immediately after photolysis contains a five-coordinate high spin heme. Single wavelength transient absorption data show triphasic kinetics with rate constants of (2.1+/-0.08)x10(4), (2.0+/-0.01)x10(3), and 57+/-0.01 s(-1). The data suggest a model for ligand recombination in which the methionine sulfoxide and CO compete for binding to the five-coordinate heme with rate constants of (2.1+/-0.08)x10(4) and (2.0+/-0.01)x10(3) s(-1), respectively. Carbon monoxide then binds to the population of cytochrome c containing the methionine sulfoxide with a rate constant of 57 s(-1). In addition, the slower than expected rate of methionine sulfoxide recombination (much smaller rate constant than expected for a ligand restricted to the distal heme pocket) is attributed to hydrogen bonding between the unbound methionine sulfoxide and Tyr(68).