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Broderick JB, Duffus B, Duschene KS, Shepard EM. Radical S-adenosylmethionine enzymes. Chem Rev 2014; 114:4229-317. [PMID: 24476342 PMCID: PMC4002137 DOI: 10.1021/cr4004709] [Citation(s) in RCA: 591] [Impact Index Per Article: 59.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2013] [Indexed: 12/22/2022]
Affiliation(s)
- Joan B. Broderick
- Department of Chemistry and
Biochemistry, Montana State University, Bozeman, Montana 59717, United States
| | - Benjamin
R. Duffus
- Department of Chemistry and
Biochemistry, Montana State University, Bozeman, Montana 59717, United States
| | - Kaitlin S. Duschene
- Department of Chemistry and
Biochemistry, Montana State University, Bozeman, Montana 59717, United States
| | - Eric M. Shepard
- Department of Chemistry and
Biochemistry, Montana State University, Bozeman, Montana 59717, United States
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JONES JG, MORRISON GA. Inhibitions by Tetracycline and Oxytetracycline of the Consumption of Pyruvate by Aerobacter Aerogenes. J Pharm Pharmacol 2011; 15:34-44. [PMID: 13964743 DOI: 10.1111/j.2042-7158.1963.tb12741.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Abstract
The effects of tetracycline and oxytetracycline on the production of pyruvate and on its utilisation by a strain of Aerobacter aerogenes in glucose-mineral salt media, have been examined. Both antibiotics inhibit the production of formate from pyruvate by non-proliferating suspensions of cells in unaerated, but not in aerated media. The only acidic material accumulated during growth is formic acid and the cessation of growth coincides with the concentration of undissociated formic acid reaching 0·2 mM and 0·3 mM respectively in unaerated and aerated media. At the end of the growth phase of unaerated cultures the reproduction of cells is replaced by the production of lactic acid. The possibility of a common primary site of inhibition being responsible for inhibition of pyruvate and mode II inhibition of growth (Jones and Morrison, 1962) is discussed.
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UTTER MF, WOOD HG. Mechanisms of fixation of carbon dioxide by heterotrophes and autotrophs. ACTA ACUST UNITED AC 2004; 12:41-151. [PMID: 14885018 DOI: 10.1002/9780470122570.ch2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2023]
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McLEAN DJ, ROBINSON NH, PURDIE EF. The influence of the metabolic state and of the medium on carbon dioxide fixation by Serratia marcescens. J Bacteriol 2004; 61:617-26. [PMID: 14832205 PMCID: PMC386051 DOI: 10.1128/jb.61.5.617-626.1951] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Brush EJ, Lipsett KA, Kozarich JW. Inactivation of Escherichia coli pyruvate formate-lyase by hypophosphite: evidence for a rate-limiting phosphorus-hydrogen bond cleavage. Biochemistry 1988; 27:2217-22. [PMID: 3288283 DOI: 10.1021/bi00406a061] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Recently, Knappe and co-workers [Knappe, J., Neugebauer, F. A., Blaschkowski, H. P., & Ganzler, M. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 1332] have shown that the catalytically active form of pyruvate formate-lyase from Escherichia coli is associated with a protein-bound organic free radical which is quenched upon enzyme inactivation by oxygen or hypophosphite. Our interest in the chemical mechanism of this unusual enzymatic reaction has led us to investigate several key aspects of the inactivation of the lyase by hypophosphite and its relationship to the normal enzymatic reaction. We report here that the inactivation of both the free and acetylated forms of the lyase is subject to a primary kinetic isotope effect using [2H2]hypophosphite. This suggests that phosphorus-hydrogen bond cleavage is at least partially rate limiting during inactivation. In addition, the inactivated enzyme can be fully reactivated. We have also determined a Vmax/Km isotope effect of 3.6 +/- 0.7 for pyruvate formation from [2H]formate and acetyl coenzyme A. Thus, carbon-hydrogen bond cleavage is partially rate limiting in the normal reverse reaction. On the basis of our findings, the previous work of Knappe and co-workers, the likelihood that hypophosphite is a formate analogue, the known susceptibility of both hypophosphite and formate to homolysis, and a chemical precedent for homolytic cleavage of pyruvate, we offer a preliminary mechanistic proposal for the lyase reaction.
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Affiliation(s)
- E J Brush
- Department of Chemistry and Biochemistry, University of Maryland, College Park 20742
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Singh AP, Bragg PD. Anaerobic transport of amino acids coupled to the glycerol-3-phosphate-fumarate oxidoreductase system in a cytochrome-deficient mutant of Escherichia coli. BIOCHIMICA ET BIOPHYSICA ACTA 1976; 423:450-61. [PMID: 130924 DOI: 10.1016/0005-2728(76)90200-0] [Citation(s) in RCA: 35] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The uptake of proline and glutamine by cytochrome-deficient cells of Escherichia coli SASX76 grown aerobically on glucose or anaerobically on pyruvate was stimulated by these two substrates. Pyruvate could not stimulate transport in the glucose-grown cells. Uptake of these amino acids energized by glucose was inhibited by inhibitors of the Ca2+, Mg2+-stimulated ATPase such as DCCD, pyrophosphate, and azide, and by the uncouplers CCCP and 2,4-dinitrophenol. Glycerol (or glycerol 3-phosphate) in the presence of fumarate stimulated the transport of proline and glutamine under anaerobic conditions in cytochrome-deficient cells but not in membrane vesicles prepared from these cells although glycerol 3-phosphate-fumarate oxidoreductase activity could be demonstrated in the vesicle preparation. In contrast, in vesicles prepared from cytochrome-containing cells of E. coli SASX76 amino acid transport was energized under anaerobic conditions by this system. Inhibitors of the Ca2+, Mg2+-activated ATPase and uncoupling agents inhibited the uptake of proline and glutamine in cytochrome-deficient cells dependent on the glycerol-fumarate oxidoreductase system. Ferricyanide could replace fumarate as an electron acceptor to permit transport of phenylalanine in cytochrome-deficient or cytochrome-containing cells under anaerobic conditions. It is concluded that in cytochrome-deficient cells using glucose, pyruvate, or glycerol in the presence of fumarate, transport of both proline and glutamine under under anaerobic conditions is energized by ATP through the Ca2+, Mg2+-activated ATPase. In cytochrome-containing cells under anaerobic conditions electron transfer between glycerol and fumarate can also drive transport of these amino acids.
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Knappe J, Blaschkowski HP, Gröbner P, Schmitt T. Pyruvate formate-lyase of Escherichia coli: the acetyl-enzyme intermediate. EUROPEAN JOURNAL OF BIOCHEMISTRY 1974; 50:253-63. [PMID: 4615902 DOI: 10.1111/j.1432-1033.1974.tb03894.x] [Citation(s) in RCA: 131] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Nakayama H, Midwinter GG, Krampitz LO. Properties of the pyruvate formate-lyase reaction. Arch Biochem Biophys 1971; 143:526-34. [PMID: 4934183 DOI: 10.1016/0003-9861(71)90237-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Higgins TE, Johnson MJ. Pathways of anaerobic acetate utilization in Escherichia coli and Aerobacter cloacae. J Bacteriol 1970; 101:885-91. [PMID: 4908786 PMCID: PMC250406 DOI: 10.1128/jb.101.3.885-891.1970] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Acetate-1-(14)C was added to anaerobic glucose-fermenting cultures of Escherichia coli and Aerobacter cloacae. In the E. coli culture, lactate formation occurred late in the fermentation, when the rate of production of formate and acetate had decreased. The occurrence of acetate label in the lactate indicated formation of pyruvate from acetyl-coenzyme A (CoA) and formate. In the A. cloacae cultures, substantial amounts of acetate label were found in the 2,3-butanediol formed. Evidence is presented that the label could have entered the diol only by conversion of formate and acetyl-CoA into pyruvate. The observed levels of radioactivity in the diol indicated that during diol formation the reaction yielding formate and acetyl-CoA from pyruvate CoA was operating close to equilibrium. The shift in metabolism from formation of acetate, ethyl alcohol, and formate to the formation of butanediol or lactate appears to be due basically to an approach to equilibrium of the pyruvate-splitting reaction, whatever the induction mechanism by which the shift is implemented.
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Knappe J, Schacht J, Möckel W, Höpner T, Vetter H, Edenharder R. Pyruvate formate-lyase reaction in Escherichia coli. The enzymatic system converting an inactive form of the lyase into the catalytically active enzyme. EUROPEAN JOURNAL OF BIOCHEMISTRY 1969; 11:316-27. [PMID: 4902610 DOI: 10.1111/j.1432-1033.1969.tb00775.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Decker K, Jungermann K, Thauer RK, Hunt SV. Net CO2 fixation into the S-methyl group of methionine and into the positions 2 and 8 of the purines in Clostridium kluyveri. BIOCHIMICA ET BIOPHYSICA ACTA 1967; 141:202-4. [PMID: 6051580 DOI: 10.1016/0304-4165(67)90266-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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BECK JV, SAGERS RD. Studies on the formation of formate, glycine, serine, pyruvate and acetate from purines by Clostridium acidi-urici. J Bacteriol 1956; 72:199-208. [PMID: 13366899 PMCID: PMC357879 DOI: 10.1128/jb.72.2.199-208.1956] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Ghose TK. The influence of short-chain fatty acids, vitamins and some other factors on the sulphate-reduction in lactate cultures ofDesulphovibrio desulphuricans (Beijerinck), Kluyver and van Niel. ACTA ACUST UNITED AC 1955. [DOI: 10.1007/bf02483577] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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NOVELLI GD. The exchange of H14COOH with the carboxyl group of pyruvate by Clostridium butylicum and Micrococcus lactilyticus. BIOCHIMICA ET BIOPHYSICA ACTA 1955; 18:594-6. [PMID: 13304060 DOI: 10.1016/0006-3002(55)90170-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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WOOD HG, LEAVER FW. CO2 turnover in the fermentation of 3,4,5 and 6 carbon compounds by the propionic acid bacteria. BIOCHIMICA ET BIOPHYSICA ACTA 1953; 12:207-22. [PMID: 13115430 DOI: 10.1016/0006-3002(53)90140-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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STOKES JL. Inhibition of microbial oxidation, assimilation and adaptive enzyme formation by methylene blue. Antonie Van Leeuwenhoek 1952; 18:63-81. [PMID: 12977217 DOI: 10.1007/bf02538591] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ochoa S, Salles JBV, Ortiz PJ. BIOSYNTHESIS OF DICARBOXYLIC ACIDS BY CARBON DIOXIDE FIXATION. J Biol Chem 1950. [DOI: 10.1016/s0021-9258(18)56232-3] [Citation(s) in RCA: 55] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Chantrenne H, Lipmann F. COENZYME A DEPENDENCE AND ACETYL DONOR FUNCTION OF THE PYRUVATE-FORMATE EXCHANGE SYSTEM. J Biol Chem 1950. [DOI: 10.1016/s0021-9258(18)56222-0] [Citation(s) in RCA: 105] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Strecker HJ, Wood HG, Krampitz LO. FIXATION OF FORMIC ACID IN PYRUVATE BY A REACTION NOT UTILIZING ACETYL PHOSPHATE. J Biol Chem 1950. [DOI: 10.1016/s0021-9258(18)56487-5] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Affiliation(s)
- J L Stokes
- Hopkins Marine Station, Pacific Grove, California
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Gurin S. Isotopic Tracers in the Study of Carbohydrate Metabolism. ACTA ACUST UNITED AC 1948. [DOI: 10.1016/s0096-5332(08)60031-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
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Buchanan JM, Sakami W, Gurin S, Wilson DW. A STUDY OF THE INTERMEDIATES OF ACETATE AND ACETOACETATE OXIDATION WITH ISOTOPIC CARBON. J Biol Chem 1945. [DOI: 10.1016/s0021-9258(17)41578-x] [Citation(s) in RCA: 41] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Lipmann F, Tuttle LC. ON THE CONDENSATION OF ACETYL PHOSPHATE WITH FORMATE OR CARBON DIOXIDE IN BACTERIAL EXTRACTS. J Biol Chem 1945. [DOI: 10.1016/s0021-9258(18)43158-4] [Citation(s) in RCA: 85] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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